Wall clock time and date at job start Tue Mar 31 2020 09:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50700 * 119.99653 * 2 1 4 4 N 1.46502 * 109.47223 * 125.00056 * 3 2 1 5 5 C 1.34814 * 126.59016 * 124.99824 * 4 3 2 6 6 C 1.36601 * 106.83441 * 180.02562 * 5 4 3 7 7 C 1.47521 * 125.77047 * 179.97438 * 6 5 4 8 8 O 1.21603 * 119.99881 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00175 * 180.27419 * 7 6 5 10 10 C 1.47023 * 125.65071 * 179.44261 * 9 7 6 11 11 C 1.54332 * 107.26961 * 178.85296 * 10 9 7 12 12 H 1.09001 * 110.67032 * 96.52075 * 11 10 9 13 13 C 1.53001 * 110.85182 * 219.67381 * 11 10 9 14 14 C 1.55161 * 103.01766 * 338.14277 * 11 10 9 15 15 H 1.09000 * 111.00315 * 277.22890 * 14 11 10 16 16 N 1.46500 * 111.00731 * 153.38261 * 14 11 10 17 17 C 1.36928 * 120.00570 * 161.34874 * 16 14 11 18 18 H 1.08006 * 119.99842 * 359.97438 * 17 16 14 19 19 C 1.38808 * 120.00427 * 179.97438 * 17 16 14 20 20 N 1.31616 * 120.00147 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00162 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47359 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47313 * 120.00020 * 21 19 17 24 24 H 1.48504 * 109.47347 * 240.00442 * 21 19 17 25 25 C 1.47429 * 125.64730 * 359.75537 * 9 7 6 26 26 N 1.34399 * 108.46049 * 0.26443 * 6 5 4 27 27 N 1.28760 * 109.52242 * 359.55000 * 26 6 5 28 28 H 1.07998 * 120.00099 * 0.02562 * 1 2 3 29 29 H 1.07997 * 119.99726 * 180.02562 * 1 2 3 30 30 H 1.08000 * 120.00477 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.47427 * 4.99615 * 3 2 1 32 32 H 1.09006 * 109.47105 * 245.00089 * 3 2 1 33 33 H 1.07993 * 126.58839 * 0.02562 * 5 4 3 34 34 H 1.08999 * 109.88097 * 298.39800 * 10 9 7 35 35 H 1.08998 * 109.88079 * 59.55938 * 10 9 7 36 36 H 1.08998 * 109.46827 * 173.68756 * 13 11 10 37 37 H 1.08998 * 109.46950 * 293.68783 * 13 11 10 38 38 H 1.08999 * 109.46800 * 53.69219 * 13 11 10 39 39 H 0.97001 * 119.99695 * 341.34589 * 16 14 11 40 40 H 0.97000 * 120.00769 * 179.97438 * 20 19 17 41 41 H 1.08998 * 110.36548 * 322.92708 * 25 9 7 42 42 H 1.08998 * 110.36892 * 85.14386 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1314 5 6 4.3230 1.5499 1.0739 6 6 4.7901 1.4862 2.3560 7 6 6.1942 1.6645 2.7720 8 8 7.0510 1.8906 1.9393 9 7 6.5281 1.5718 4.0744 10 6 7.8843 1.7156 4.6237 11 6 7.7769 1.5614 6.1555 12 1 8.0071 0.5393 6.4564 13 6 8.6974 2.5539 6.8687 14 6 6.2877 1.8941 6.4368 15 1 6.1327 2.9713 6.4974 16 7 5.8224 1.2294 7.6566 17 6 4.6928 1.6738 8.2902 18 1 4.1450 2.5146 7.8909 19 6 4.2517 1.0437 9.4457 20 7 4.9195 0.0194 9.9327 21 14 2.7111 1.6504 10.3105 22 1 2.1495 2.8073 9.5677 23 1 1.7065 0.5577 10.3567 24 1 3.0520 2.0684 11.6941 25 6 5.5949 1.3030 5.1836 26 7 3.7553 1.2274 3.1736 27 7 2.6731 1.1355 2.4821 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5399 -0.9353 0.0004 30 1 1.8502 -0.9353 -0.0004 31 1 1.3586 2.1317 0.0895 32 1 2.6213 1.4027 -0.9314 33 1 4.9065 1.7385 0.1850 34 1 8.5335 0.9409 4.2158 35 1 8.2807 2.7011 4.3791 36 1 8.5223 2.5040 7.9433 37 1 9.7366 2.3017 6.6577 38 1 8.4888 3.5629 6.5130 39 1 6.3146 0.4745 8.0154 40 1 4.6115 -0.4207 10.7404 41 1 4.6417 1.8012 5.0066 42 1 5.4450 0.2299 5.3017 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939277468.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:08:54 Heat of formation + Delta-G solvation = 106.693660 kcal Electronic energy + Delta-G solvation = -24707.402254 eV Core-core repulsion = 21112.087666 eV Total energy + Delta-G solvation = -3595.314588 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.20292 -39.53244 -37.43198 -36.25445 -34.00944 -33.08906 -32.36357 -30.86380 -30.53280 -27.59756 -27.40026 -26.18546 -24.03040 -23.08966 -22.41096 -21.29995 -20.59276 -19.84068 -19.43462 -17.60452 -17.08122 -16.25649 -16.22366 -15.81292 -15.60499 -15.24927 -14.65011 -14.51470 -14.10463 -13.74577 -13.52516 -13.06230 -12.97199 -12.85040 -12.65197 -12.59301 -12.14472 -11.98431 -11.77017 -11.55408 -11.20231 -11.00314 -10.90080 -10.59423 -10.53353 -10.49814 -10.11649 -10.07347 -9.94167 -9.77850 -9.64962 -9.28890 -8.91319 -8.24373 -6.97942 -5.76003 -3.05592 1.08499 1.42491 1.83149 2.24376 3.22045 3.45578 3.46548 3.52783 3.54554 4.07144 4.20283 4.30918 4.53913 4.57735 4.66757 4.88762 4.96042 5.08008 5.24574 5.26532 5.31220 5.36920 5.61206 5.66280 5.77069 5.87146 5.96136 6.01371 6.02860 6.07505 6.13001 6.27240 6.31819 6.37103 6.54533 6.61880 6.67255 6.79509 7.00656 7.74357 7.80162 7.98066 8.36002 8.42092 9.54007 10.07798 10.43053 11.46339 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.011158 B = 0.004214 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.752974 B = 6643.086384 C = 8859.602931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.182 4.182 3 C 0.152 3.848 4 N -0.364 5.364 5 C 0.086 3.914 6 C -0.093 4.093 7 C 0.612 3.388 8 O -0.557 6.557 9 N -0.597 5.597 10 C 0.118 3.882 11 C -0.115 4.115 12 H 0.084 0.916 13 C -0.134 4.134 14 C 0.176 3.824 15 H 0.064 0.936 16 N -0.710 5.710 17 C -0.240 4.240 18 H 0.073 0.927 19 C -0.009 4.009 20 N -0.931 5.931 21 Si 0.906 3.094 22 H -0.279 1.279 23 H -0.291 1.291 24 H -0.292 1.292 25 C 0.075 3.925 26 N -0.189 5.189 27 N -0.059 5.059 28 H 0.103 0.897 29 H 0.108 0.892 30 H 0.118 0.882 31 H 0.101 0.899 32 H 0.112 0.888 33 H 0.203 0.797 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.049 0.951 38 H 0.052 0.948 39 H 0.387 0.613 40 H 0.255 0.745 41 H 0.090 0.910 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.960 2.543 -21.546 21.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.201 4.201 3 C 0.032 3.968 4 N -0.149 5.149 5 C -0.070 4.070 6 C -0.232 4.232 7 C 0.399 3.601 8 O -0.436 6.436 9 N -0.328 5.328 10 C -0.004 4.004 11 C -0.134 4.134 12 H 0.103 0.897 13 C -0.191 4.191 14 C 0.064 3.936 15 H 0.082 0.918 16 N -0.350 5.350 17 C -0.371 4.371 18 H 0.091 0.909 19 C -0.206 4.206 20 N -0.579 5.579 21 Si 0.737 3.263 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.219 1.219 25 C -0.050 4.050 26 N -0.063 5.063 27 N -0.040 5.040 28 H 0.121 0.879 29 H 0.126 0.874 30 H 0.136 0.864 31 H 0.119 0.881 32 H 0.130 0.870 33 H 0.219 0.781 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.221 0.779 40 H 0.065 0.935 41 H 0.108 0.892 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.830 2.478 -20.983 21.317 hybrid contribution -0.171 0.026 -0.239 0.295 sum -3.001 2.503 -21.222 21.579 Atomic orbital electron populations 1.23996 0.95473 1.02843 0.96282 1.22870 0.96392 0.97411 1.03377 1.21067 0.91945 0.98171 0.85638 1.50599 1.06529 1.48480 1.09261 1.23306 0.84685 0.98563 1.00490 1.21426 0.95489 1.15954 0.90342 1.16395 0.84970 0.77318 0.81425 1.90762 1.49653 1.51966 1.51224 1.48301 1.10647 1.68029 1.05778 1.22017 0.83403 1.01418 0.93610 1.22499 0.97679 1.00901 0.92354 0.89718 1.21666 0.97851 0.98109 1.01511 1.21404 0.89537 0.96295 0.86411 0.91841 1.42275 1.30358 1.37596 1.24740 1.19290 1.01358 1.11630 1.04835 0.90934 1.24722 0.99196 0.98177 0.98459 1.69665 1.40700 1.23793 1.23780 0.86135 0.82920 0.77919 0.79340 1.20465 1.21846 1.21922 1.23714 0.93818 1.01762 0.85748 1.74921 0.96237 1.09126 1.26019 1.82115 1.17358 1.21498 0.82989 0.87892 0.87380 0.86443 0.88084 0.87002 0.78052 0.91770 0.91418 0.91317 0.93224 0.92894 0.77903 0.93533 0.89219 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 14.32 29.01 0.42 -0.45 16 2 C -0.18 -1.23 9.72 -36.03 -0.35 -1.58 16 3 C 0.15 0.95 6.98 -5.19 -0.04 0.91 16 4 N -0.36 -4.00 3.68 -62.24 -0.23 -4.23 16 5 C 0.09 0.99 11.27 -16.83 -0.19 0.80 16 6 C -0.09 -1.46 6.84 -83.55 -0.57 -2.03 16 7 C 0.61 10.61 7.85 -12.48 -0.10 10.52 16 8 O -0.56 -10.25 17.19 5.27 0.09 -10.16 16 9 N -0.60 -10.43 3.33 -171.74 -0.57 -11.00 16 10 C 0.12 1.85 6.48 -3.06 -0.02 1.83 16 11 C -0.11 -1.87 3.16 -88.78 -0.28 -2.16 16 12 H 0.08 1.42 7.99 -51.93 -0.42 1.00 16 13 C -0.13 -1.95 9.16 37.16 0.34 -1.61 16 14 C 0.18 3.49 3.14 -65.78 -0.21 3.29 16 15 H 0.06 1.30 8.04 -51.93 -0.42 0.88 16 16 N -0.71 -17.35 5.28 -51.35 -0.27 -17.62 16 17 C -0.24 -6.57 9.98 -15.06 -0.15 -6.72 16 18 H 0.07 1.96 7.83 -52.48 -0.41 1.54 16 19 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 20 N -0.93 -27.78 13.06 55.49 0.72 -27.06 16 21 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 C 0.08 1.45 5.80 -2.53 -0.01 1.44 16 26 N -0.19 -3.30 9.40 32.85 0.31 -2.99 16 27 N -0.06 -0.92 13.63 60.35 0.82 -0.10 16 28 H 0.10 0.49 7.84 -52.49 -0.41 0.08 16 29 H 0.11 0.56 8.06 -52.49 -0.42 0.13 16 30 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 31 H 0.10 0.51 7.79 -51.93 -0.40 0.11 16 32 H 0.11 0.34 8.08 -51.93 -0.42 -0.08 16 33 H 0.20 1.55 8.06 -52.49 -0.42 1.13 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 1.00 7.77 -51.93 -0.40 0.60 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.05 0.73 8.07 -51.93 -0.42 0.31 16 39 H 0.39 10.00 7.71 -40.82 -0.31 9.68 16 40 H 0.25 7.37 8.31 -40.82 -0.34 7.04 16 41 H 0.09 1.84 6.15 -51.93 -0.32 1.52 16 42 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 358.97 15.07 5.41 5.41 Total: -1.00 -33.72 358.97 -6.03 -39.74 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -6.03 Total: 6.72 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -1.26 Total: 3.86 kcal Atomic # 7 Polarization: -63.78 SS G_CDS: 0.78 Total: -63.00 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.16 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.72 -6.03 -39.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939277468.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.435 kcal (2) G-P(sol) polarization free energy of solvation -33.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds