Wall clock time and date at job start Tue Mar 31 2020 09:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.69892 * 2 1 4 4 C 1.53188 * 109.58747 * 239.63902 * 2 1 3 5 5 C 1.53039 * 109.31262 * 185.57945 * 4 2 1 6 6 H 1.08996 * 109.44749 * 181.38134 * 5 4 2 7 7 N 1.46501 * 109.45880 * 301.34676 * 5 4 2 8 8 C 1.34783 * 119.99934 * 205.06715 * 7 5 4 9 9 O 1.21562 * 119.99857 * 359.97438 * 8 7 5 10 10 C 1.47727 * 119.99797 * 179.97438 * 8 7 5 11 11 N 1.33019 * 120.16682 * 5.13203 * 10 8 7 12 12 C 1.31720 * 120.01071 * 180.02562 * 11 10 8 13 13 C 1.38797 * 120.34493 * 359.97438 * 12 11 10 14 14 N 1.32034 * 120.32942 * 359.76148 * 13 12 11 15 15 C 1.32828 * 119.97538 * 0.50997 * 14 13 12 16 16 N 1.38278 * 120.16702 * 179.74795 * 15 14 13 17 17 C 1.53037 * 109.53733 * 61.36633 * 5 4 2 18 18 C 1.53196 * 109.31646 * 298.63468 * 17 5 4 19 19 N 1.46924 * 108.77265 * 54.63208 * 18 17 5 20 20 C 1.36933 * 120.62773 * 126.41408 * 19 18 17 21 21 H 1.07998 * 120.00408 * 210.39765 * 20 19 18 22 22 C 1.38817 * 120.00131 * 30.39734 * 20 19 18 23 23 N 1.31614 * 119.99561 * 14.22026 * 22 20 19 24 24 Si 1.86797 * 120.00127 * 194.21502 * 22 20 19 25 25 H 1.48498 * 109.47359 * 60.00429 * 24 22 20 26 26 H 1.48500 * 109.46824 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47222 * 300.00023 * 24 22 20 28 28 H 1.09002 * 109.47378 * 299.64786 * 1 2 3 29 29 H 1.08996 * 109.47252 * 59.64574 * 1 2 3 30 30 H 1.08999 * 109.47169 * 179.64619 * 1 2 3 31 31 H 1.09000 * 109.49789 * 65.62978 * 4 2 1 32 32 H 1.08993 * 109.49956 * 305.52906 * 4 2 1 33 33 H 0.97001 * 120.00318 * 25.06730 * 7 5 4 34 34 H 1.08000 * 119.83182 * 179.97438 * 12 11 10 35 35 H 1.08006 * 119.83814 * 180.02562 * 13 12 11 36 36 H 0.96996 * 120.00512 * 155.40516 * 16 15 14 37 37 H 0.97004 * 119.99966 * 335.12421 * 16 15 14 38 38 H 1.09002 * 109.50029 * 58.58687 * 17 5 4 39 39 H 1.09003 * 109.49806 * 178.68381 * 17 5 4 40 40 H 1.08995 * 109.58697 * 174.42498 * 18 17 5 41 41 H 1.09004 * 109.58415 * 294.70843 * 18 17 5 42 42 H 0.97000 * 119.99939 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7295 -1.2453 5 6 3.5675 -0.8481 -1.1700 6 1 3.9376 -1.3451 -2.0667 7 7 4.1570 0.4897 -1.0748 8 6 5.4207 0.7006 -1.4934 9 8 6.0714 -0.2194 -1.9495 10 6 6.0150 2.0497 -1.3980 11 7 5.3447 3.0351 -0.8071 12 6 5.8772 4.2369 -0.7242 13 6 7.1377 4.4832 -1.2505 14 7 7.8172 3.5138 -1.8352 15 6 7.2902 2.2983 -1.9308 16 7 7.9961 1.2814 -2.5470 17 6 3.9568 -1.6657 0.0637 18 6 3.4650 -0.9469 1.3240 19 7 2.0225 -0.6995 1.1946 20 6 1.1537 -1.1126 2.1690 21 1 0.1424 -1.3885 1.9093 22 6 1.5728 -1.1768 3.4909 23 7 2.6913 -0.5870 3.8559 24 14 0.5492 -2.1001 4.7515 25 1 0.4277 -3.5229 4.3443 26 1 1.2087 -2.0194 6.0795 27 1 -0.8029 -1.4913 4.8330 28 1 -0.3634 0.5084 0.8931 29 1 -0.3633 0.5193 -0.8867 30 1 -0.3633 -1.0276 -0.0063 31 1 1.7661 -0.1670 -2.1368 32 1 1.6030 -1.7254 -1.2912 33 1 3.6379 1.2237 -0.7106 34 1 5.3303 5.0350 -0.2442 35 1 7.5668 5.4717 -1.1776 36 1 7.8102 0.3564 -2.3221 37 1 8.6745 1.4929 -3.2073 38 1 3.4982 -2.6529 0.0055 39 1 5.0411 -1.7696 0.1039 40 1 3.6517 -1.5717 2.1973 41 1 3.9921 0.0009 1.4332 42 1 2.9840 -0.6315 4.7796 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947144152.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:05:34 Heat of formation + Delta-G solvation = 41.781084 kcal Electronic energy + Delta-G solvation = -25792.041355 eV Core-core repulsion = 22193.911947 eV Total energy + Delta-G solvation = -3598.129408 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.25928 -39.48183 -37.66365 -35.60259 -34.18737 -33.72395 -32.31231 -31.27830 -30.01528 -29.26233 -26.41209 -25.60067 -24.84894 -23.64026 -22.10886 -21.35396 -20.55563 -18.69028 -18.37214 -17.73338 -17.58995 -16.36569 -16.01619 -15.59860 -15.16925 -15.00714 -14.82879 -14.34758 -14.05664 -13.87458 -13.71302 -13.41581 -13.07883 -12.79236 -12.43411 -11.84053 -11.73747 -11.66809 -11.41060 -11.18739 -10.97780 -10.68442 -10.62157 -10.60729 -10.40921 -10.16037 -10.06969 -10.03807 -9.66597 -9.29896 -9.16606 -8.69433 -8.43615 -8.13204 -6.58886 -5.75121 -3.20572 0.49479 1.18151 2.87293 3.17784 3.39054 3.45278 3.45773 3.52636 3.83833 4.15074 4.28209 4.50344 4.58718 5.04571 5.17663 5.20364 5.35423 5.37990 5.42163 5.62563 5.68414 5.99114 6.11564 6.15509 6.25143 6.32932 6.38467 6.46701 6.57164 6.62516 6.74672 6.89540 6.97335 7.03546 7.08677 7.21033 7.40393 7.48357 7.71627 7.78649 7.83973 7.97764 8.42744 8.49417 9.24652 9.87912 10.45515 11.32993 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.019209 B = 0.004011 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.265139 B = 6979.727931 C = 7295.585151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.167 3.833 3 H 0.023 0.977 4 C -0.139 4.139 5 C 0.152 3.848 6 H 0.074 0.926 7 N -0.686 5.686 8 C 0.583 3.417 9 O -0.554 6.554 10 C -0.035 4.035 11 N -0.371 5.371 12 C -0.016 4.016 13 C 0.126 3.874 14 N -0.507 5.507 15 C 0.404 3.596 16 N -0.824 5.824 17 C -0.154 4.154 18 C 0.176 3.824 19 N -0.585 5.585 20 C -0.251 4.251 21 H 0.068 0.932 22 C 0.004 3.996 23 N -0.902 5.902 24 Si 0.900 3.100 25 H -0.284 1.284 26 H -0.292 1.292 27 H -0.283 1.283 28 H 0.062 0.938 29 H 0.038 0.962 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.413 0.587 34 H 0.173 0.827 35 H 0.173 0.827 36 H 0.427 0.573 37 H 0.399 0.601 38 H 0.065 0.935 39 H 0.053 0.947 40 H 0.084 0.916 41 H 0.019 0.981 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.519 7.529 -12.278 15.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.060 3.940 3 H 0.040 0.960 4 C -0.179 4.179 5 C 0.048 3.952 6 H 0.093 0.907 7 N -0.335 5.335 8 C 0.368 3.632 9 O -0.433 6.433 10 C -0.184 4.184 11 N -0.088 5.088 12 C -0.181 4.181 13 C -0.039 4.039 14 N -0.231 5.231 15 C 0.162 3.838 16 N -0.376 5.376 17 C -0.194 4.194 18 C 0.050 3.950 19 N -0.309 5.309 20 C -0.381 4.381 21 H 0.086 0.914 22 C -0.194 4.194 23 N -0.546 5.546 24 Si 0.730 3.270 25 H -0.211 1.211 26 H -0.218 1.218 27 H -0.209 1.209 28 H 0.081 0.919 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.250 0.750 34 H 0.190 0.810 35 H 0.190 0.810 36 H 0.270 0.730 37 H 0.228 0.772 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.102 0.898 41 H 0.037 0.963 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.965 6.726 -12.393 15.727 hybrid contribution -0.381 -0.142 0.885 0.974 sum 6.584 6.584 -11.508 14.803 Atomic orbital electron populations 1.21793 0.95831 1.01419 1.00312 1.20401 0.93181 0.93271 0.87176 0.96003 1.22369 0.93730 1.02382 0.99374 1.20992 0.93268 0.82032 0.98932 0.90747 1.45957 1.13352 1.13133 1.61098 1.17451 0.82304 0.85609 0.77816 1.90464 1.60979 1.43295 1.48602 1.21566 0.92988 0.95925 1.07906 1.68158 1.33459 0.99793 1.07383 1.23463 0.96072 0.94987 1.03582 1.23801 0.92003 0.98158 0.89919 1.68219 1.34379 1.00131 1.20323 1.19082 0.87555 0.88480 0.88685 1.42842 1.41986 1.08171 1.44607 1.22571 0.99867 0.99442 0.97490 1.20696 0.83272 0.97139 0.93897 1.44090 1.02902 1.64955 1.18935 1.19110 0.95388 1.37639 0.85980 0.91395 1.25112 0.97779 0.99498 0.97043 1.70004 1.23598 1.44308 1.16737 0.86409 0.79692 0.80044 0.80813 1.21087 1.21753 1.20933 0.91897 0.94342 0.92747 0.92573 0.90550 0.74959 0.81007 0.81008 0.73031 0.77172 0.91661 0.92828 0.89763 0.96299 0.93691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 7.95 37.16 0.30 -2.17 16 2 C 0.17 3.29 3.20 -67.60 -0.22 3.07 16 3 H 0.02 0.45 6.64 -51.93 -0.34 0.11 16 4 C -0.14 -2.32 5.07 -26.61 -0.13 -2.46 16 5 C 0.15 2.63 2.78 -67.89 -0.19 2.45 16 6 H 0.07 1.26 7.58 -51.93 -0.39 0.86 16 7 N -0.69 -11.71 4.26 -54.75 -0.23 -11.94 16 8 C 0.58 9.88 7.76 -12.38 -0.10 9.79 16 9 O -0.55 -9.75 13.41 5.31 0.07 -9.68 16 10 C -0.04 -0.54 6.77 -82.65 -0.56 -1.10 16 11 N -0.37 -5.45 9.71 -9.49 -0.09 -5.54 16 12 C -0.02 -0.18 11.21 -17.39 -0.19 -0.37 16 13 C 0.13 1.24 11.22 -17.26 -0.19 1.05 16 14 N -0.51 -6.34 10.52 -11.99 -0.13 -6.47 16 15 C 0.40 5.63 7.77 -154.87 -1.20 4.43 16 16 N -0.82 -9.92 8.64 31.32 0.27 -9.65 16 17 C -0.15 -3.03 5.77 -26.61 -0.15 -3.19 16 18 C 0.18 4.17 5.01 -3.71 -0.02 4.15 16 19 N -0.59 -13.98 2.98 -164.77 -0.49 -14.47 16 20 C -0.25 -6.61 8.56 -15.06 -0.13 -6.74 16 21 H 0.07 1.74 6.25 -52.49 -0.33 1.41 16 22 C 0.00 0.12 4.97 -17.43 -0.09 0.03 16 23 N -0.90 -25.97 11.19 55.49 0.62 -25.35 16 24 Si 0.90 21.48 29.58 -169.99 -5.03 16.46 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 28 H 0.06 1.24 7.63 -51.93 -0.40 0.85 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.99 7.44 -51.93 -0.39 0.61 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.41 7.20 6.22 -40.82 -0.25 6.95 16 34 H 0.17 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.17 0.96 8.06 -52.48 -0.42 0.54 16 36 H 0.43 5.58 5.87 -40.82 -0.24 5.35 16 37 H 0.40 3.75 8.95 -40.82 -0.37 3.39 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.08 2.27 6.15 -51.93 -0.32 1.95 16 41 H 0.02 0.48 7.74 -51.93 -0.40 0.08 16 42 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 335.28 15.07 5.05 5.05 Total: -1.00 -30.87 335.28 -8.36 -39.23 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -5.52 Total: 13.42 kcal Atomic # 6 Polarization: 11.81 SS G_CDS: -2.88 Total: 8.93 kcal Atomic # 7 Polarization: -73.36 SS G_CDS: -0.05 Total: -73.42 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.07 Total: -9.68 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.87 -8.36 -39.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947144152.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.007 kcal (2) G-P(sol) polarization free energy of solvation -30.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds