Wall clock time and date at job start Tue Mar 31 2020 09:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.69892 * 2 1 4 4 C 1.53188 * 109.58747 * 239.63902 * 2 1 3 5 5 C 1.53039 * 109.31262 * 185.57945 * 4 2 1 6 6 H 1.08996 * 109.44749 * 181.38134 * 5 4 2 7 7 N 1.46501 * 109.45880 * 301.34676 * 5 4 2 8 8 C 1.34783 * 119.99934 * 205.06715 * 7 5 4 9 9 O 1.21562 * 119.99857 * 359.97438 * 8 7 5 10 10 C 1.47727 * 119.99797 * 179.97438 * 8 7 5 11 11 N 1.33019 * 120.16682 * 5.13203 * 10 8 7 12 12 C 1.31720 * 120.01071 * 180.02562 * 11 10 8 13 13 C 1.38797 * 120.34493 * 359.97438 * 12 11 10 14 14 N 1.32034 * 120.32942 * 359.76148 * 13 12 11 15 15 C 1.32828 * 119.97538 * 0.50997 * 14 13 12 16 16 N 1.38278 * 120.16702 * 179.74795 * 15 14 13 17 17 C 1.53037 * 109.53733 * 61.36633 * 5 4 2 18 18 C 1.53196 * 109.31646 * 298.63468 * 17 5 4 19 19 N 1.46924 * 108.77265 * 54.63208 * 18 17 5 20 20 C 1.36933 * 120.62773 * 126.41408 * 19 18 17 21 21 H 1.07998 * 120.00408 * 210.39765 * 20 19 18 22 22 C 1.38817 * 120.00131 * 30.39734 * 20 19 18 23 23 N 1.31614 * 119.99561 * 14.22026 * 22 20 19 24 24 Si 1.86797 * 120.00127 * 194.21502 * 22 20 19 25 25 H 1.48498 * 109.47359 * 60.00429 * 24 22 20 26 26 H 1.48500 * 109.46824 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47222 * 300.00023 * 24 22 20 28 28 H 1.09002 * 109.47378 * 299.64786 * 1 2 3 29 29 H 1.08996 * 109.47252 * 59.64574 * 1 2 3 30 30 H 1.08999 * 109.47169 * 179.64619 * 1 2 3 31 31 H 1.09000 * 109.49789 * 65.62978 * 4 2 1 32 32 H 1.08993 * 109.49956 * 305.52906 * 4 2 1 33 33 H 0.97001 * 120.00318 * 25.06730 * 7 5 4 34 34 H 1.08000 * 119.83182 * 179.97438 * 12 11 10 35 35 H 1.08006 * 119.83814 * 180.02562 * 13 12 11 36 36 H 0.96996 * 120.00512 * 155.40516 * 16 15 14 37 37 H 0.97004 * 119.99966 * 335.12421 * 16 15 14 38 38 H 1.09002 * 109.50029 * 58.58687 * 17 5 4 39 39 H 1.09003 * 109.49806 * 178.68381 * 17 5 4 40 40 H 1.08995 * 109.58697 * 174.42498 * 18 17 5 41 41 H 1.09004 * 109.58415 * 294.70843 * 18 17 5 42 42 H 0.97000 * 119.99939 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7295 -1.2453 5 6 3.5675 -0.8481 -1.1700 6 1 3.9376 -1.3451 -2.0667 7 7 4.1570 0.4897 -1.0748 8 6 5.4207 0.7006 -1.4934 9 8 6.0714 -0.2194 -1.9495 10 6 6.0150 2.0497 -1.3980 11 7 5.3447 3.0351 -0.8071 12 6 5.8772 4.2369 -0.7242 13 6 7.1377 4.4832 -1.2505 14 7 7.8172 3.5138 -1.8352 15 6 7.2902 2.2983 -1.9308 16 7 7.9961 1.2814 -2.5470 17 6 3.9568 -1.6657 0.0637 18 6 3.4650 -0.9469 1.3240 19 7 2.0225 -0.6995 1.1946 20 6 1.1537 -1.1126 2.1690 21 1 0.1424 -1.3885 1.9093 22 6 1.5728 -1.1768 3.4909 23 7 2.6913 -0.5870 3.8559 24 14 0.5492 -2.1001 4.7515 25 1 0.4277 -3.5229 4.3443 26 1 1.2087 -2.0194 6.0795 27 1 -0.8029 -1.4913 4.8330 28 1 -0.3634 0.5084 0.8931 29 1 -0.3633 0.5193 -0.8867 30 1 -0.3633 -1.0276 -0.0063 31 1 1.7661 -0.1670 -2.1368 32 1 1.6030 -1.7254 -1.2912 33 1 3.6379 1.2237 -0.7106 34 1 5.3303 5.0350 -0.2442 35 1 7.5668 5.4717 -1.1776 36 1 7.8102 0.3564 -2.3221 37 1 8.6745 1.4929 -3.2073 38 1 3.4982 -2.6529 0.0055 39 1 5.0411 -1.7696 0.1039 40 1 3.6517 -1.5717 2.1973 41 1 3.9921 0.0009 1.4332 42 1 2.9840 -0.6315 4.7796 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947144152.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:05:34 Heat of formation + Delta-G solvation = 19.432708 kcal Electronic energy + Delta-G solvation = -25793.010453 eV Core-core repulsion = 22193.911947 eV Total energy + Delta-G solvation = -3599.098506 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.26900 -40.80262 -39.15546 -36.66518 -35.72023 -34.70690 -34.05450 -32.83368 -31.54273 -30.48213 -28.00682 -26.92819 -26.39752 -24.62605 -23.78404 -22.69804 -22.12943 -20.23910 -19.46667 -18.86570 -18.49656 -18.16967 -17.14201 -17.07097 -16.73204 -16.11338 -16.03251 -15.82276 -15.48566 -15.36536 -15.14739 -14.74630 -14.41939 -14.27225 -14.09529 -13.33631 -13.19522 -12.80908 -12.73015 -12.66900 -12.63603 -12.48776 -12.29878 -12.18399 -11.97785 -11.69891 -11.56860 -11.40772 -11.30357 -10.98989 -10.48941 -10.15236 -10.07656 -9.10789 -8.55937 -7.80298 -5.27440 -0.47578 0.24396 1.48235 1.50370 1.56188 1.70738 2.06400 2.49264 2.54651 2.83602 3.14503 3.35173 3.41303 3.60184 3.64788 3.92838 4.08874 4.15762 4.19945 4.27389 4.44409 4.47564 4.62243 4.68619 4.79985 4.93706 4.97578 5.03693 5.11313 5.17558 5.32131 5.42232 5.52123 5.54583 5.58020 5.75110 5.77814 5.98291 6.30447 6.43100 6.46768 6.60371 6.99030 7.16190 7.21401 7.93502 8.46115 9.25813 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.019209 B = 0.004011 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.265139 B = 6979.727931 C = 7295.585151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.159 3.841 3 H 0.017 0.983 4 C -0.125 4.125 5 C 0.157 3.843 6 H 0.087 0.913 7 N -0.689 5.689 8 C 0.578 3.422 9 O -0.569 6.569 10 C -0.074 4.074 11 N -0.399 5.399 12 C -0.015 4.015 13 C 0.145 3.855 14 N -0.516 5.516 15 C 0.396 3.604 16 N -0.819 5.819 17 C -0.141 4.141 18 C 0.190 3.810 19 N -0.599 5.599 20 C -0.249 4.249 21 H 0.076 0.924 22 C -0.053 4.053 23 N -0.938 5.938 24 Si 0.960 3.040 25 H -0.280 1.280 26 H -0.301 1.301 27 H -0.274 1.274 28 H 0.040 0.960 29 H 0.075 0.925 30 H 0.052 0.948 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.410 0.590 34 H 0.206 0.794 35 H 0.223 0.777 36 H 0.422 0.578 37 H 0.410 0.590 38 H 0.067 0.933 39 H 0.047 0.953 40 H 0.045 0.955 41 H -0.008 1.008 42 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.048 8.878 -13.916 17.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.053 3.947 3 H 0.035 0.965 4 C -0.165 4.165 5 C 0.053 3.947 6 H 0.105 0.895 7 N -0.338 5.338 8 C 0.365 3.635 9 O -0.449 6.449 10 C -0.219 4.219 11 N -0.116 5.116 12 C -0.182 4.182 13 C -0.020 4.020 14 N -0.240 5.240 15 C 0.154 3.846 16 N -0.370 5.370 17 C -0.181 4.181 18 C 0.064 3.936 19 N -0.323 5.323 20 C -0.379 4.379 21 H 0.094 0.906 22 C -0.247 4.247 23 N -0.585 5.585 24 Si 0.789 3.211 25 H -0.206 1.206 26 H -0.227 1.227 27 H -0.200 1.200 28 H 0.059 0.941 29 H 0.094 0.906 30 H 0.071 0.929 31 H 0.106 0.894 32 H 0.099 0.901 33 H 0.247 0.753 34 H 0.223 0.777 35 H 0.239 0.761 36 H 0.263 0.737 37 H 0.242 0.758 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.010 0.990 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 6.492 8.035 -14.095 17.475 hybrid contribution -0.177 -0.375 1.369 1.430 sum 6.315 7.661 -12.725 16.140 Atomic orbital electron populations 1.21725 0.94342 1.01526 1.01051 1.20644 0.94455 0.92952 0.86612 0.96523 1.22239 0.92780 1.02645 0.98794 1.20905 0.93978 0.82111 0.97728 0.89534 1.45909 1.13657 1.12680 1.61541 1.17789 0.82024 0.86446 0.77221 1.90441 1.61193 1.44051 1.49230 1.21294 0.94080 0.95574 1.10987 1.68095 1.34470 1.00970 1.08044 1.24160 0.96781 0.94479 1.02762 1.24649 0.91176 0.99292 0.86925 1.68359 1.34708 0.99951 1.20936 1.19182 0.87327 0.89324 0.88778 1.42775 1.41941 1.07680 1.44605 1.22381 0.99328 0.99507 0.96889 1.20345 0.83633 0.95377 0.94282 1.44314 1.02533 1.65665 1.19818 1.19476 0.95829 1.36117 0.86471 0.90611 1.25823 0.98997 1.00942 0.98985 1.70179 1.25485 1.46405 1.16409 0.85444 0.78472 0.78998 0.78149 1.20605 1.22719 1.19980 0.94126 0.90606 0.92924 0.89438 0.90085 0.75286 0.77712 0.76069 0.73658 0.75835 0.91412 0.93383 0.93686 0.98984 0.94598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.43 7.95 71.98 0.57 -3.85 16 2 C 0.16 6.11 3.20 44.97 0.14 6.26 16 3 H 0.02 0.68 6.64 -2.39 -0.02 0.67 16 4 C -0.13 -3.93 5.07 30.67 0.16 -3.77 16 5 C 0.16 5.33 2.78 45.02 0.13 5.45 16 6 H 0.09 2.79 7.58 -2.39 -0.02 2.77 16 7 N -0.69 -23.52 4.26 -445.40 -1.90 -25.42 16 8 C 0.58 19.80 7.76 86.75 0.67 20.47 16 9 O -0.57 -20.19 13.41 -3.91 -0.05 -20.25 16 10 C -0.07 -2.27 6.77 42.01 0.28 -1.99 16 11 N -0.40 -11.42 9.71 -183.95 -1.79 -13.21 16 12 C -0.01 -0.29 11.21 84.84 0.95 0.66 16 13 C 0.15 2.39 11.22 84.80 0.95 3.34 16 14 N -0.52 -11.83 10.52 -191.85 -2.02 -13.85 16 15 C 0.40 10.74 7.77 133.50 1.04 11.78 16 16 N -0.82 -19.44 8.64 -54.83 -0.47 -19.91 16 17 C -0.14 -5.65 5.77 30.67 0.18 -5.47 16 18 C 0.19 9.34 5.01 86.36 0.43 9.77 16 19 N -0.60 -28.95 2.98 -675.22 -2.02 -30.96 16 20 C -0.25 -13.17 8.56 84.04 0.72 -12.45 16 21 H 0.08 3.84 6.25 -2.91 -0.02 3.82 16 22 C -0.05 -2.92 4.97 84.86 0.42 -2.50 16 23 N -0.94 -56.11 11.19 21.65 0.24 -55.87 16 24 Si 0.96 44.93 29.58 68.60 2.03 46.95 16 25 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 26 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 27 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 28 H 0.04 1.55 7.63 -2.39 -0.02 1.53 16 29 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.05 1.81 7.44 -2.39 -0.02 1.79 16 31 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 33 H 0.41 14.39 6.22 -92.71 -0.58 13.82 16 34 H 0.21 2.45 8.06 -2.91 -0.02 2.43 16 35 H 0.22 1.30 8.06 -2.91 -0.02 1.28 16 36 H 0.42 11.14 5.87 -92.71 -0.54 10.60 16 37 H 0.41 7.44 8.95 -92.71 -0.83 6.61 16 38 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 39 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.04 2.55 6.15 -2.39 -0.01 2.54 16 41 H -0.01 -0.43 7.74 -2.39 -0.02 -0.44 16 42 H 0.24 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -69.56 335.28 -0.19 -69.76 By element: Atomic # 1 Polarization: 35.93 SS G_CDS: -0.87 Total: 35.06 kcal Atomic # 6 Polarization: 21.05 SS G_CDS: 6.64 Total: 27.70 kcal Atomic # 7 Polarization: -151.27 SS G_CDS: -7.95 Total: -159.22 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.05 Total: -20.25 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -69.56 -0.19 -69.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947144152.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.190 kcal (2) G-P(sol) polarization free energy of solvation -69.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds