Wall clock time and date at job start Tue Mar 31 2020 08:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46936 * 2 1 4 4 N 1.46491 * 109.47752 * 120.00131 * 2 1 3 5 5 C 1.34814 * 126.59994 * 275.00529 * 4 2 1 6 6 C 1.36590 * 106.84609 * 179.97438 * 5 4 2 7 7 C 1.47527 * 125.77372 * 179.97438 * 6 5 4 8 8 O 1.21593 * 119.99711 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00060 * 180.02562 * 7 6 5 10 10 C 1.46499 * 120.00011 * 180.02562 * 9 7 6 11 11 H 1.09003 * 115.51403 * 350.41151 * 10 9 7 12 12 C 1.52999 * 117.44226 * 205.00283 * 10 9 7 13 13 H 1.09001 * 119.54102 * 5.74816 * 12 10 9 14 14 C 1.54390 * 118.12352 * 160.85520 * 12 10 9 15 15 N 1.48140 * 104.61976 * 87.18429 * 14 12 10 16 16 C 1.36936 * 127.83547 * 140.41411 * 15 14 12 17 17 H 1.08001 * 120.00581 * 344.76578 * 16 15 14 18 18 C 1.38818 * 120.00148 * 164.76416 * 16 15 14 19 19 N 1.31616 * 119.99609 * 351.33316 * 18 16 15 20 20 Si 1.86797 * 120.00268 * 171.32615 * 18 16 15 21 21 H 1.48501 * 109.47072 * 84.99972 * 20 18 16 22 22 H 1.48506 * 109.47120 * 325.00344 * 20 18 16 23 23 H 1.48494 * 109.47321 * 204.99822 * 20 18 16 24 24 C 1.48141 * 104.32691 * 320.67556 * 15 14 12 25 25 C 1.52995 * 117.40772 * 135.77052 * 10 9 7 26 26 H 1.08999 * 119.54204 * 355.89993 * 25 10 9 27 27 N 1.34406 * 108.45487 * 0.24126 * 6 5 4 28 28 N 1.28757 * 109.52272 * 359.58350 * 27 6 5 29 29 H 1.08994 * 109.47489 * 59.99551 * 1 2 3 30 30 H 1.08995 * 109.46784 * 180.02562 * 1 2 3 31 31 H 1.09012 * 109.46621 * 299.99587 * 1 2 3 32 32 H 1.09006 * 109.46905 * 240.00700 * 2 1 3 33 33 H 1.09003 * 109.46961 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47556 * 299.99929 * 3 2 1 35 35 H 1.08996 * 109.47267 * 60.00524 * 3 2 1 36 36 H 1.08008 * 126.57286 * 359.97438 * 5 4 2 37 37 H 0.96998 * 119.99832 * 0.02562 * 9 7 6 38 38 H 1.09001 * 110.40422 * 328.39715 * 14 12 10 39 39 H 1.08998 * 110.50649 * 206.02360 * 14 12 10 40 40 H 0.97005 * 119.99916 * 180.02562 * 19 18 16 41 41 H 1.09000 * 110.41049 * 158.10498 * 24 15 14 42 42 H 1.08998 * 110.40933 * 280.54404 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0185 -0.6906 1.1960 5 6 2.1975 -0.1515 2.4187 6 6 2.6635 -1.1492 3.2268 7 6 3.0007 -1.0142 4.6567 8 8 2.8697 0.0588 5.2135 9 7 3.4538 -2.0802 5.3457 10 6 3.7881 -1.9462 6.7658 11 1 3.8003 -0.9267 7.1511 12 6 4.8037 -2.9319 7.3471 13 1 5.3136 -3.6314 6.6846 14 6 5.5058 -2.5578 8.6702 15 7 4.5942 -3.0497 9.7293 16 6 4.9288 -3.6548 10.9112 17 1 5.9261 -4.0435 11.0556 18 6 3.9862 -3.7687 11.9240 19 7 2.8296 -3.1495 11.8191 20 14 4.3594 -4.8010 13.4355 21 1 5.1103 -3.9823 14.4209 22 1 5.1775 -5.9764 13.0425 23 1 3.0870 -5.2648 14.0446 24 6 3.2382 -2.7442 9.2168 25 6 3.3086 -3.0510 7.7094 26 1 2.6856 -3.8567 7.3209 27 7 2.7686 -2.2733 2.4975 28 7 2.3891 -2.0396 1.2896 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 2.0085 0.8729 2.7043 37 1 3.5587 -2.9360 4.9014 38 1 5.6262 -1.4770 8.7442 39 1 6.4741 -3.0531 8.7420 40 1 2.1711 -3.2288 12.5269 41 1 2.4970 -3.3816 9.6990 42 1 2.9990 -1.6930 9.3773 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962157605.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:41:34 Heat of formation + Delta-G solvation = 121.115039 kcal Electronic energy + Delta-G solvation = -24028.757423 eV Core-core repulsion = 20434.068194 eV Total energy + Delta-G solvation = -3594.689230 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.47724 -39.60312 -38.18582 -36.89994 -34.44087 -32.67476 -31.83230 -31.08476 -30.02549 -28.05439 -27.12111 -25.81880 -24.55725 -23.71339 -21.70402 -21.18339 -20.44433 -20.18841 -19.23105 -18.14995 -16.84461 -16.41812 -16.31210 -16.22658 -15.29147 -14.94240 -14.72852 -14.52813 -14.34541 -13.73522 -13.60393 -13.24652 -13.18393 -12.98941 -12.70456 -12.49398 -12.21826 -12.16175 -11.86455 -11.54020 -11.48144 -11.38652 -10.96597 -10.79472 -10.66253 -10.37148 -10.18570 -10.13482 -10.02716 -9.68858 -9.51252 -9.13027 -8.70207 -8.26733 -6.82620 -5.75568 -3.09868 0.90233 1.56860 1.67714 3.10952 3.24931 3.41496 3.46425 3.48471 3.78249 3.99203 4.10786 4.30344 4.37462 4.47193 4.51834 4.67855 4.78834 4.83493 4.95528 4.98584 5.15887 5.21780 5.39065 5.42308 5.44382 5.45419 5.56604 5.63660 5.88290 5.96211 6.09209 6.19795 6.30703 6.57472 6.73316 6.85265 6.94462 7.41589 7.52775 7.58561 7.75973 7.79682 8.24878 8.25718 9.14856 9.77653 10.54768 11.38707 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.043020 B = 0.002306 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.700863 B =12140.459165 C =12207.543192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.144 3.856 3 C -0.170 4.170 4 N -0.357 5.357 5 C 0.095 3.905 6 C -0.097 4.097 7 C 0.606 3.394 8 O -0.537 6.537 9 N -0.681 5.681 10 C 0.096 3.904 11 H 0.134 0.866 12 C -0.182 4.182 13 H 0.105 0.895 14 C 0.156 3.844 15 N -0.593 5.593 16 C -0.226 4.226 17 H 0.077 0.923 18 C -0.006 4.006 19 N -0.915 5.915 20 Si 0.913 3.087 21 H -0.287 1.287 22 H -0.281 1.281 23 H -0.290 1.290 24 C 0.185 3.815 25 C -0.177 4.177 26 H 0.103 0.897 27 N -0.205 5.205 28 N -0.067 5.067 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.114 0.886 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.203 0.797 37 H 0.407 0.593 38 H 0.028 0.972 39 H 0.052 0.948 40 H 0.255 0.745 41 H 0.092 0.908 42 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.872 8.183 -26.522 28.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.042 3.958 3 C -0.228 4.228 4 N -0.143 5.143 5 C -0.062 4.062 6 C -0.237 4.237 7 C 0.390 3.610 8 O -0.413 6.413 9 N -0.328 5.328 10 C -0.010 4.010 11 H 0.151 0.849 12 C -0.204 4.204 13 H 0.123 0.877 14 C 0.029 3.971 15 N -0.317 5.317 16 C -0.354 4.354 17 H 0.094 0.906 18 C -0.203 4.203 19 N -0.561 5.561 20 Si 0.743 3.257 21 H -0.214 1.214 22 H -0.207 1.207 23 H -0.216 1.216 24 C 0.059 3.941 25 C -0.199 4.199 26 H 0.121 0.879 27 N -0.079 5.079 28 N -0.047 5.047 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.132 0.868 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.220 0.780 37 H 0.242 0.758 38 H 0.045 0.955 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.110 0.890 42 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -3.913 7.568 -26.638 27.968 hybrid contribution -0.010 -0.078 0.793 0.797 sum -3.923 7.490 -25.845 27.193 Atomic orbital electron populations 1.22269 0.92421 1.03935 1.03921 1.21646 0.95735 0.93439 0.84949 1.22277 1.02738 0.93281 1.04491 1.50755 1.44615 1.09725 1.09176 1.23267 0.97343 1.01158 0.84462 1.21505 1.14366 0.90700 0.97102 1.16683 0.77021 0.84217 0.83077 1.90816 1.54276 1.26928 1.69319 1.45146 1.64819 1.12604 1.10240 1.21878 1.02584 0.97819 0.78725 0.84883 1.24304 0.93493 1.02543 1.00021 0.87700 1.21124 0.93488 0.96577 0.85898 1.45169 1.00398 1.68603 1.17501 1.18970 0.97925 1.29517 0.89036 0.90556 1.24905 0.97212 1.00350 0.97875 1.69896 1.07390 1.44948 1.33877 0.86132 0.77012 0.79912 0.82631 1.21398 1.20664 1.21572 1.20980 0.89483 0.98845 0.84801 1.24671 0.96779 1.00195 0.98254 0.87920 1.74636 1.11132 1.23341 0.98789 1.81978 1.18316 0.91857 1.12524 0.89642 0.91175 0.91339 0.86797 0.91045 0.89239 0.90926 0.78050 0.75831 0.95478 0.92943 0.93534 0.89031 0.95566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.61 9.52 37.16 0.35 -0.26 16 2 C 0.14 0.65 3.96 -67.93 -0.27 0.38 16 3 C -0.17 -0.46 8.85 37.16 0.33 -0.13 16 4 N -0.36 -3.10 3.54 -54.57 -0.19 -3.29 16 5 C 0.09 0.92 10.40 -16.84 -0.18 0.74 16 6 C -0.10 -1.26 6.99 -83.55 -0.58 -1.84 16 7 C 0.61 9.35 7.82 -12.48 -0.10 9.26 16 8 O -0.54 -9.65 16.43 5.28 0.09 -9.57 16 9 N -0.68 -10.38 5.56 -54.85 -0.30 -10.69 16 10 C 0.10 1.69 5.98 -67.93 -0.41 1.28 16 11 H 0.13 2.58 7.40 -51.93 -0.38 2.19 16 12 C -0.18 -3.35 7.06 -89.22 -0.63 -3.98 16 13 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 14 C 0.16 3.34 7.04 -2.41 -0.02 3.32 16 15 N -0.59 -15.48 3.38 -169.11 -0.57 -16.05 16 16 C -0.23 -6.38 10.36 -15.06 -0.16 -6.53 16 17 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 18 C -0.01 -0.18 5.40 -17.43 -0.09 -0.27 16 19 N -0.91 -27.15 10.84 55.49 0.60 -26.54 16 20 Si 0.91 22.15 29.56 -169.99 -5.03 17.12 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 C 0.18 4.56 5.68 -2.62 -0.01 4.55 16 25 C -0.18 -3.51 7.04 -89.43 -0.63 -4.14 16 26 H 0.10 1.92 8.14 -51.93 -0.42 1.49 16 27 N -0.21 -2.75 12.04 32.85 0.40 -2.36 16 28 N -0.07 -0.80 13.78 60.35 0.83 0.03 16 29 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.28 8.14 -51.92 -0.42 -0.15 16 32 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 34 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 35 H 0.07 0.19 7.23 -51.93 -0.38 -0.19 16 36 H 0.20 1.40 7.34 -52.48 -0.39 1.01 16 37 H 0.41 5.56 8.51 -40.82 -0.35 5.21 16 38 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.09 2.51 6.50 -51.93 -0.34 2.17 16 42 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 355.25 15.07 5.35 5.35 Total: -1.00 -33.96 355.25 -7.24 -41.21 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -6.03 Total: 2.40 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -2.39 Total: 2.38 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: 0.76 Total: -58.90 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.57 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.12 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.96 -7.24 -41.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962157605.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.323 kcal (2) G-P(sol) polarization free energy of solvation -33.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds