Wall clock time and date at job start Tue Mar 31 2020 08:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46936 * 2 1 4 4 N 1.46491 * 109.47752 * 120.00131 * 2 1 3 5 5 C 1.34814 * 126.59994 * 275.00529 * 4 2 1 6 6 C 1.36590 * 106.84609 * 179.97438 * 5 4 2 7 7 C 1.47527 * 125.77372 * 179.97438 * 6 5 4 8 8 O 1.21593 * 119.99711 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00060 * 180.02562 * 7 6 5 10 10 C 1.46499 * 120.00011 * 180.02562 * 9 7 6 11 11 H 1.09003 * 115.51403 * 350.41151 * 10 9 7 12 12 C 1.52999 * 117.44226 * 205.00283 * 10 9 7 13 13 H 1.09001 * 119.54102 * 5.74816 * 12 10 9 14 14 C 1.54390 * 118.12352 * 160.85520 * 12 10 9 15 15 N 1.48140 * 104.61976 * 87.18429 * 14 12 10 16 16 C 1.36936 * 127.83547 * 140.41411 * 15 14 12 17 17 H 1.08001 * 120.00581 * 344.76578 * 16 15 14 18 18 C 1.38818 * 120.00148 * 164.76416 * 16 15 14 19 19 N 1.31616 * 119.99609 * 351.33316 * 18 16 15 20 20 Si 1.86797 * 120.00268 * 171.32615 * 18 16 15 21 21 H 1.48501 * 109.47072 * 84.99972 * 20 18 16 22 22 H 1.48506 * 109.47120 * 325.00344 * 20 18 16 23 23 H 1.48494 * 109.47321 * 204.99822 * 20 18 16 24 24 C 1.48141 * 104.32691 * 320.67556 * 15 14 12 25 25 C 1.52995 * 117.40772 * 135.77052 * 10 9 7 26 26 H 1.08999 * 119.54204 * 355.89993 * 25 10 9 27 27 N 1.34406 * 108.45487 * 0.24126 * 6 5 4 28 28 N 1.28757 * 109.52272 * 359.58350 * 27 6 5 29 29 H 1.08994 * 109.47489 * 59.99551 * 1 2 3 30 30 H 1.08995 * 109.46784 * 180.02562 * 1 2 3 31 31 H 1.09012 * 109.46621 * 299.99587 * 1 2 3 32 32 H 1.09006 * 109.46905 * 240.00700 * 2 1 3 33 33 H 1.09003 * 109.46961 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47556 * 299.99929 * 3 2 1 35 35 H 1.08996 * 109.47267 * 60.00524 * 3 2 1 36 36 H 1.08008 * 126.57286 * 359.97438 * 5 4 2 37 37 H 0.96998 * 119.99832 * 0.02562 * 9 7 6 38 38 H 1.09001 * 110.40422 * 328.39715 * 14 12 10 39 39 H 1.08998 * 110.50649 * 206.02360 * 14 12 10 40 40 H 0.97005 * 119.99916 * 180.02562 * 19 18 16 41 41 H 1.09000 * 110.41049 * 158.10498 * 24 15 14 42 42 H 1.08998 * 110.40933 * 280.54404 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0185 -0.6906 1.1960 5 6 2.1975 -0.1515 2.4187 6 6 2.6635 -1.1492 3.2268 7 6 3.0007 -1.0142 4.6567 8 8 2.8697 0.0588 5.2135 9 7 3.4538 -2.0802 5.3457 10 6 3.7881 -1.9462 6.7658 11 1 3.8003 -0.9267 7.1511 12 6 4.8037 -2.9319 7.3471 13 1 5.3136 -3.6314 6.6846 14 6 5.5058 -2.5578 8.6702 15 7 4.5942 -3.0497 9.7293 16 6 4.9288 -3.6548 10.9112 17 1 5.9261 -4.0435 11.0556 18 6 3.9862 -3.7687 11.9240 19 7 2.8296 -3.1495 11.8191 20 14 4.3594 -4.8010 13.4355 21 1 5.1103 -3.9823 14.4209 22 1 5.1775 -5.9764 13.0425 23 1 3.0870 -5.2648 14.0446 24 6 3.2382 -2.7442 9.2168 25 6 3.3086 -3.0510 7.7094 26 1 2.6856 -3.8567 7.3209 27 7 2.7686 -2.2733 2.4975 28 7 2.3891 -2.0396 1.2896 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 2.0085 0.8729 2.7043 37 1 3.5587 -2.9360 4.9014 38 1 5.6262 -1.4770 8.7442 39 1 6.4741 -3.0531 8.7420 40 1 2.1711 -3.2288 12.5269 41 1 2.4970 -3.3816 9.6990 42 1 2.9990 -1.6930 9.3773 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962157605.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:41:33 Heat of formation + Delta-G solvation = 97.178023 kcal Electronic energy + Delta-G solvation = -24029.795410 eV Core-core repulsion = 20434.068194 eV Total energy + Delta-G solvation = -3595.727217 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.31893 -41.02047 -39.68540 -37.43044 -36.09974 -34.37124 -32.54119 -32.40231 -31.49109 -28.94065 -28.30121 -27.68133 -25.51315 -24.68543 -23.29419 -21.96066 -21.84579 -21.43166 -20.88697 -19.10437 -18.82837 -17.66227 -17.27594 -17.11103 -16.73300 -15.94373 -15.80650 -15.69588 -15.39347 -15.31182 -14.87187 -14.62469 -14.22477 -13.77957 -13.61314 -13.34635 -13.33054 -13.22387 -13.18448 -12.89081 -12.69450 -12.54244 -12.37761 -12.14597 -12.06989 -12.05560 -11.87603 -11.65450 -11.35283 -11.34594 -10.82199 -10.70951 -10.42694 -9.72614 -8.91150 -7.90150 -5.27191 0.11217 0.54417 1.03320 1.47735 1.50093 1.59042 1.88655 2.09648 2.49784 2.85987 3.08262 3.28746 3.32966 3.59875 3.70158 3.79958 3.84187 3.90064 3.91677 4.00908 4.15185 4.21055 4.38215 4.49186 4.56695 4.62050 4.65109 4.77689 4.81880 4.89651 4.91641 5.01017 5.16947 5.21525 5.28584 5.40477 5.45123 5.48628 5.52934 5.65384 6.17815 6.35071 6.85875 7.01178 7.06162 7.68476 8.46901 9.23813 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.043020 B = 0.002306 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.700863 B =12140.459165 C =12207.543192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.134 3.866 3 C -0.166 4.166 4 N -0.342 5.342 5 C 0.112 3.888 6 C -0.122 4.122 7 C 0.609 3.391 8 O -0.567 6.567 9 N -0.674 5.674 10 C 0.119 3.881 11 H 0.117 0.883 12 C -0.161 4.161 13 H 0.137 0.863 14 C 0.150 3.850 15 N -0.618 5.618 16 C -0.240 4.240 17 H 0.084 0.916 18 C -0.065 4.065 19 N -0.949 5.949 20 Si 0.983 3.017 21 H -0.283 1.283 22 H -0.268 1.268 23 H -0.294 1.294 24 C 0.191 3.809 25 C -0.185 4.185 26 H 0.117 0.883 27 N -0.224 5.224 28 N -0.086 5.086 29 H 0.112 0.888 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.124 0.876 33 H 0.064 0.936 34 H 0.114 0.886 35 H 0.076 0.924 36 H 0.230 0.770 37 H 0.417 0.583 38 H 0.025 0.975 39 H 0.066 0.934 40 H 0.250 0.750 41 H 0.058 0.942 42 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.416 8.462 -28.937 30.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.035 3.965 3 C -0.224 4.224 4 N -0.127 5.127 5 C -0.046 4.046 6 C -0.262 4.262 7 C 0.395 3.605 8 O -0.445 6.445 9 N -0.322 5.322 10 C 0.012 3.988 11 H 0.134 0.866 12 C -0.182 4.182 13 H 0.154 0.846 14 C 0.024 3.976 15 N -0.342 5.342 16 C -0.369 4.369 17 H 0.102 0.898 18 C -0.259 4.259 19 N -0.597 5.597 20 Si 0.810 3.190 21 H -0.209 1.209 22 H -0.193 1.193 23 H -0.220 1.220 24 C 0.065 3.935 25 C -0.206 4.206 26 H 0.135 0.865 27 N -0.097 5.097 28 N -0.066 5.066 29 H 0.131 0.869 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.142 0.858 33 H 0.083 0.917 34 H 0.133 0.867 35 H 0.095 0.905 36 H 0.247 0.753 37 H 0.254 0.746 38 H 0.043 0.957 39 H 0.085 0.915 40 H 0.059 0.941 41 H 0.076 0.924 42 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges -3.437 7.832 -29.130 30.360 hybrid contribution -0.179 -0.040 1.409 1.421 sum -3.616 7.792 -27.721 29.022 Atomic orbital electron populations 1.22277 0.91451 1.03257 1.05184 1.22136 0.96435 0.94371 0.83595 1.22312 1.02295 0.91851 1.05976 1.51111 1.42902 1.08715 1.09984 1.23645 0.95252 1.01593 0.84127 1.21264 1.16832 0.91948 0.96113 1.16964 0.76025 0.83535 0.83995 1.90799 1.55489 1.27937 1.70243 1.44997 1.64864 1.13352 1.08972 1.21457 1.01209 0.96318 0.79773 0.86558 1.24221 0.92109 1.02828 0.98994 0.84565 1.21277 0.93751 0.96451 0.86123 1.45473 1.01738 1.68886 1.18068 1.19393 0.98274 1.29228 0.89968 0.89796 1.25794 0.97176 1.01846 1.01054 1.70104 1.08341 1.46582 1.34635 0.85043 0.76609 0.78505 0.78799 1.20924 1.19310 1.22005 1.20679 0.88547 0.96365 0.87927 1.24346 0.98604 1.02076 0.95613 0.86491 1.74603 1.11880 1.23919 0.99313 1.81895 1.18948 0.93721 1.12016 0.86905 0.92790 0.91564 0.85806 0.91731 0.86735 0.90507 0.75329 0.74604 0.95741 0.91512 0.94112 0.92406 0.98329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.78 9.52 71.98 0.69 -0.09 16 2 C 0.13 0.86 3.96 44.99 0.18 1.04 16 3 C -0.17 -0.36 8.85 71.98 0.64 0.28 16 4 N -0.34 -5.27 3.54 -326.55 -1.16 -6.42 16 5 C 0.11 1.96 10.40 83.85 0.87 2.83 16 6 C -0.12 -3.02 6.99 40.81 0.29 -2.73 16 7 C 0.61 18.32 7.82 86.69 0.68 19.00 16 8 O -0.57 -20.12 16.43 -4.01 -0.07 -20.19 16 9 N -0.67 -19.82 5.56 -445.72 -2.48 -22.30 16 10 C 0.12 4.14 5.98 44.99 0.27 4.41 16 11 H 0.12 4.55 7.40 -2.39 -0.02 4.53 16 12 C -0.16 -5.66 7.06 -9.88 -0.07 -5.73 16 13 H 0.14 4.01 8.14 -2.39 -0.02 4.00 16 14 C 0.15 6.33 7.04 86.54 0.61 6.94 16 15 N -0.62 -32.76 3.38 -688.95 -2.33 -35.09 16 16 C -0.24 -13.67 10.36 84.03 0.87 -12.80 16 17 H 0.08 4.52 7.84 -2.91 -0.02 4.50 16 18 C -0.07 -3.77 5.40 84.86 0.46 -3.31 16 19 N -0.95 -58.29 10.84 21.65 0.23 -58.06 16 20 Si 0.98 46.11 29.56 68.60 2.03 48.14 16 21 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 23 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 24 C 0.19 9.79 5.68 86.40 0.49 10.28 16 25 C -0.18 -7.31 7.04 -10.02 -0.07 -7.38 16 26 H 0.12 4.29 8.14 -2.39 -0.02 4.28 16 27 N -0.22 -5.78 12.04 -49.99 -0.60 -6.38 16 28 N -0.09 -1.96 13.78 37.02 0.51 -1.45 16 29 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 30 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.07 0.37 8.14 -2.38 -0.02 0.35 16 32 H 0.12 0.60 8.14 -2.38 -0.02 0.58 16 33 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 34 H 0.11 -0.27 8.14 -2.39 -0.02 -0.29 16 35 H 0.08 0.14 7.23 -2.39 -0.02 0.12 16 36 H 0.23 2.56 7.34 -2.91 -0.02 2.54 16 37 H 0.42 10.74 8.51 -92.71 -0.79 9.95 16 38 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 40 H 0.25 14.85 8.31 -92.70 -0.77 14.08 16 41 H 0.06 3.33 6.50 -2.39 -0.02 3.31 16 42 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 Total: -1.00 -75.77 355.25 2.29 -73.48 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 0.25 Total: 15.52 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: 5.89 Total: 12.75 kcal Atomic # 7 Polarization: -123.87 SS G_CDS: -5.82 Total: -129.70 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.07 Total: -20.19 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -75.77 2.29 -73.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962157605.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.661 kcal (2) G-P(sol) polarization free energy of solvation -75.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds