Wall clock time and date at job start Tue Mar 31 2020 09:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.45776 * 2 1 4 4 C 1.53036 * 109.46086 * 240.03761 * 2 1 3 5 5 C 1.53190 * 109.31245 * 178.61411 * 4 2 1 6 6 N 1.46924 * 108.77867 * 54.63597 * 5 4 2 7 7 C 1.36929 * 120.63369 * 126.38818 * 6 5 4 8 8 H 1.08008 * 120.00254 * 208.64728 * 7 6 5 9 9 C 1.38812 * 120.00169 * 28.65380 * 7 6 5 10 10 N 1.31625 * 119.99897 * 15.58501 * 9 7 6 11 11 Si 1.86802 * 120.00062 * 195.58656 * 9 7 6 12 12 H 1.48500 * 109.47126 * 59.99820 * 11 9 7 13 13 H 1.48505 * 109.46780 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47127 * 299.99733 * 11 9 7 15 15 C 1.46940 * 118.76313 * 306.40976 * 6 5 4 16 16 C 1.53036 * 109.46117 * 119.96605 * 2 1 3 17 17 H 1.09007 * 109.49550 * 61.40297 * 16 2 1 18 18 N 1.46499 * 109.50146 * 301.34074 * 16 2 1 19 19 C 1.34779 * 120.00478 * 155.06099 * 18 16 2 20 20 O 1.21564 * 119.99589 * 0.02562 * 19 18 16 21 21 C 1.47729 * 119.99955 * 179.97438 * 19 18 16 22 22 N 1.33011 * 120.16559 * 5.69668 * 21 19 18 23 23 C 1.31728 * 120.01393 * 179.97438 * 22 21 19 24 24 C 1.38802 * 120.33700 * 359.97438 * 23 22 21 25 25 N 1.32024 * 120.33237 * 0.02562 * 24 23 22 26 26 C 1.32834 * 119.97867 * 359.97438 * 25 24 23 27 27 N 1.38281 * 120.16530 * 180.02562 * 26 25 24 28 28 H 1.09007 * 109.47063 * 300.03381 * 1 2 3 29 29 H 1.08995 * 109.47136 * 60.02683 * 1 2 3 30 30 H 1.08997 * 109.47098 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.49668 * 298.56426 * 4 2 1 32 32 H 1.09001 * 109.49902 * 58.66593 * 4 2 1 33 33 H 1.08996 * 109.58725 * 174.42491 * 5 4 2 34 34 H 1.09001 * 109.58911 * 294.70264 * 5 4 2 35 35 H 0.96992 * 119.99907 * 180.02562 * 10 9 7 36 36 H 1.08996 * 109.56177 * 293.78730 * 15 6 5 37 37 H 1.09001 * 109.61533 * 173.35296 * 15 6 5 38 38 H 0.97004 * 119.99647 * 335.06117 * 18 16 2 39 39 H 1.08000 * 119.83093 * 180.02562 * 23 22 21 40 40 H 1.08001 * 119.83706 * 179.97438 * 24 23 22 41 41 H 0.97002 * 119.99771 * 23.08573 * 27 26 25 42 42 H 0.97004 * 119.99980 * 203.07454 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7206 -1.2501 5 6 3.5713 -0.6884 -1.2642 6 7 4.0679 -1.2488 -0.0001 7 6 4.9760 -2.2736 -0.0001 8 1 4.9986 -2.9752 0.8207 9 6 5.8677 -2.4107 -1.0550 10 7 6.0580 -1.4112 -1.8901 11 14 6.7977 -4.0138 -1.2896 12 1 5.8303 -5.1223 -1.4911 13 1 7.6798 -3.9047 -2.4793 14 1 7.6218 -4.2887 -0.0853 15 6 3.5714 -0.6892 1.2647 16 6 2.0398 -0.7207 1.2500 17 1 1.6973 -1.7555 1.2385 18 7 1.5255 -0.0488 2.4460 19 6 1.3982 -0.7320 3.6007 20 8 1.7107 -1.9058 3.6500 21 6 0.8802 -0.0542 4.8068 22 7 0.4325 1.1960 4.7305 23 6 -0.0293 1.7974 5.8077 24 6 -0.0525 1.1328 7.0261 25 7 0.3885 -0.1082 7.1171 26 6 0.8569 -0.7270 6.0391 27 7 1.3193 -2.0270 6.1300 28 1 -0.3633 0.5144 0.8897 29 1 -0.3633 0.5134 -0.8902 30 1 -0.3633 -1.0276 0.0005 31 1 1.6978 -1.7555 -1.2383 32 1 1.6572 -0.2205 -2.1398 33 1 3.9416 -1.2843 -2.0984 34 1 3.9142 0.3408 -1.3698 35 1 6.6808 -1.5072 -2.6274 36 1 3.9147 0.3400 1.3681 37 1 3.9412 -1.2856 2.0988 38 1 1.2766 0.8879 2.4067 39 1 -0.3925 2.8124 5.7423 40 1 -0.4325 1.6338 7.9042 41 1 1.0140 -2.6011 6.8498 42 1 1.9487 -2.3649 5.4738 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000965687353.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:12 Heat of formation + Delta-G solvation = 37.004277 kcal Electronic energy + Delta-G solvation = -25425.734374 eV Core-core repulsion = 21827.397828 eV Total energy + Delta-G solvation = -3598.336546 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.35809 -39.47395 -37.66175 -35.70803 -34.38220 -33.81902 -32.92746 -31.08993 -30.13478 -28.78768 -27.30561 -25.57545 -24.08023 -23.71050 -22.40652 -21.06794 -20.51763 -19.52443 -18.48031 -17.68767 -17.63347 -16.76905 -16.18272 -15.55383 -15.27235 -15.03004 -14.74218 -14.30654 -14.22032 -13.70922 -13.59823 -13.35748 -13.33521 -13.08997 -12.45349 -12.02898 -11.87198 -11.79655 -11.61592 -11.47597 -11.03606 -10.78684 -10.75130 -10.63501 -10.25432 -10.21708 -10.15417 -9.87261 -9.67492 -9.62065 -9.24653 -8.83989 -8.41503 -8.21384 -6.64650 -5.76763 -3.20488 0.39397 1.06176 2.79293 3.08326 3.40879 3.42006 3.46131 3.48960 3.73193 4.01781 4.17618 4.46178 4.54925 4.92892 5.04374 5.09061 5.17796 5.32242 5.41692 5.51034 5.61713 5.92413 5.98719 6.01959 6.09018 6.20465 6.24756 6.33723 6.56641 6.62945 6.67022 6.74584 6.82362 6.85248 6.99064 7.13809 7.34768 7.38426 7.67734 7.69671 7.83299 7.88380 8.35315 8.48425 9.23769 9.85596 10.41801 11.31794 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.019356 B = 0.003799 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.239845 B = 7367.691002 C = 8323.707092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.068 0.932 4 C -0.133 4.133 5 C 0.167 3.833 6 N -0.587 5.587 7 C -0.251 4.251 8 H 0.066 0.934 9 C 0.003 3.997 10 N -0.904 5.904 11 Si 0.904 3.096 12 H -0.283 1.283 13 H -0.291 1.291 14 H -0.283 1.283 15 C 0.142 3.858 16 C 0.130 3.870 17 H 0.088 0.912 18 N -0.694 5.694 19 C 0.580 3.420 20 O -0.540 6.540 21 C -0.037 4.037 22 N -0.376 5.376 23 C -0.022 4.022 24 C 0.128 3.872 25 N -0.508 5.508 26 C 0.407 3.593 27 N -0.819 5.819 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.090 0.910 34 H 0.019 0.981 35 H 0.254 0.746 36 H 0.018 0.982 37 H 0.058 0.942 38 H 0.405 0.595 39 H 0.172 0.828 40 H 0.173 0.827 41 H 0.401 0.599 42 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.261 6.789 13.170 20.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 H 0.086 0.914 4 C -0.173 4.173 5 C 0.042 3.958 6 N -0.309 5.309 7 C -0.381 4.381 8 H 0.083 0.917 9 C -0.195 4.195 10 N -0.549 5.549 11 Si 0.734 3.266 12 H -0.210 1.210 13 H -0.216 1.216 14 H -0.209 1.209 15 C 0.014 3.986 16 C 0.025 3.975 17 H 0.106 0.894 18 N -0.343 5.343 19 C 0.365 3.635 20 O -0.417 6.417 21 C -0.186 4.186 22 N -0.093 5.093 23 C -0.187 4.187 24 C -0.037 4.037 25 N -0.231 5.231 26 C 0.164 3.836 27 N -0.369 5.369 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.108 0.892 34 H 0.037 0.963 35 H 0.064 0.936 36 H 0.036 0.964 37 H 0.076 0.924 38 H 0.241 0.759 39 H 0.189 0.811 40 H 0.190 0.810 41 H 0.231 0.769 42 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -13.807 5.855 12.920 19.795 hybrid contribution 0.419 -0.454 0.040 0.619 sum -13.388 5.401 12.960 19.400 Atomic orbital electron populations 1.21858 0.95955 1.01512 1.00895 1.21302 0.94630 0.99739 0.95322 0.91373 1.22250 1.00666 0.99525 0.94846 1.20847 0.87281 0.97352 0.90347 1.43969 1.48144 1.39739 0.99078 1.19175 1.09240 1.02634 1.07053 0.91660 1.25048 0.97172 0.97484 0.99809 1.70012 1.37564 1.29288 1.18034 0.86345 0.79423 0.83589 0.77269 1.20970 1.21643 1.20878 1.21192 0.89917 0.96734 0.90731 1.21872 0.96832 0.96986 0.81796 0.89381 1.45912 1.63810 1.14817 1.09772 1.17459 0.77993 0.85743 0.82353 1.90585 1.51837 1.15586 1.83714 1.21572 1.09595 0.93676 0.93779 1.68095 1.02992 1.06707 1.31475 1.23407 1.03867 1.02125 0.89297 1.23791 0.91382 0.89513 0.99019 1.68225 1.15744 1.10715 1.28399 1.19093 0.88508 0.87551 0.88411 1.42824 1.50007 1.08740 1.35285 0.93217 0.92934 0.93011 0.92428 0.92680 0.89215 0.96311 0.93602 0.96418 0.92382 0.75945 0.81126 0.81040 0.76914 0.73041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.02 37.16 0.34 -1.63 16 2 C -0.09 -1.48 2.27 -90.58 -0.21 -1.68 16 3 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 4 C -0.13 -2.48 5.36 -26.61 -0.14 -2.62 16 5 C 0.17 3.94 5.29 -3.71 -0.02 3.92 16 6 N -0.59 -14.84 2.99 -172.31 -0.52 -15.36 16 7 C -0.25 -7.03 9.58 -15.06 -0.14 -7.17 16 8 H 0.07 1.83 7.88 -52.48 -0.41 1.41 16 9 C 0.00 0.09 4.95 -17.43 -0.09 0.00 16 10 N -0.90 -26.24 11.15 55.49 0.62 -25.63 16 11 Si 0.90 21.98 29.58 -169.99 -5.03 16.96 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 C 0.14 3.09 6.09 -3.70 -0.02 3.07 16 16 C 0.13 2.34 2.06 -67.81 -0.14 2.20 16 17 H 0.09 1.79 7.58 -51.92 -0.39 1.39 16 18 N -0.69 -10.64 4.36 -54.67 -0.24 -10.88 16 19 C 0.58 9.26 7.75 -12.38 -0.10 9.17 16 20 O -0.54 -9.76 13.46 5.31 0.07 -9.69 16 21 C -0.04 -0.52 6.77 -82.66 -0.56 -1.07 16 22 N -0.38 -4.52 9.71 -9.49 -0.09 -4.61 16 23 C -0.02 -0.19 11.21 -17.39 -0.19 -0.39 16 24 C 0.13 1.07 11.22 -17.26 -0.19 0.87 16 25 N -0.51 -5.79 10.52 -11.99 -0.13 -5.92 16 26 C 0.41 5.28 7.77 -154.86 -1.20 4.08 16 27 N -0.82 -9.67 8.57 31.32 0.27 -9.40 16 28 H 0.05 0.62 7.36 -51.93 -0.38 0.24 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.09 2.37 6.05 -51.93 -0.31 2.06 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 1.34 7.93 -51.93 -0.41 0.92 16 38 H 0.41 5.51 7.67 -40.82 -0.31 5.20 16 39 H 0.17 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.17 0.72 8.06 -52.49 -0.42 0.29 16 41 H 0.40 3.76 8.95 -40.82 -0.37 3.39 16 42 H 0.43 5.66 6.02 -40.82 -0.25 5.41 16 LS Contribution 341.88 15.07 5.15 5.15 Total: -1.00 -31.84 341.88 -8.34 -40.19 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -5.78 Total: 10.43 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: -2.67 Total: 8.75 kcal Atomic # 7 Polarization: -71.71 SS G_CDS: -0.09 Total: -71.79 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.07 Total: -9.69 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.84 -8.34 -40.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965687353.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.190 kcal (2) G-P(sol) polarization free energy of solvation -31.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds