Wall clock time and date at job start Tue Mar 31 2020 09:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.45776 * 2 1 4 4 C 1.53036 * 109.46086 * 240.03761 * 2 1 3 5 5 C 1.53190 * 109.31245 * 178.61411 * 4 2 1 6 6 N 1.46924 * 108.77867 * 54.63597 * 5 4 2 7 7 C 1.36929 * 120.63369 * 126.38818 * 6 5 4 8 8 H 1.08008 * 120.00254 * 208.64728 * 7 6 5 9 9 C 1.38812 * 120.00169 * 28.65380 * 7 6 5 10 10 N 1.31625 * 119.99897 * 15.58501 * 9 7 6 11 11 Si 1.86802 * 120.00062 * 195.58656 * 9 7 6 12 12 H 1.48500 * 109.47126 * 59.99820 * 11 9 7 13 13 H 1.48505 * 109.46780 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47127 * 299.99733 * 11 9 7 15 15 C 1.46940 * 118.76313 * 306.40976 * 6 5 4 16 16 C 1.53036 * 109.46117 * 119.96605 * 2 1 3 17 17 H 1.09007 * 109.49550 * 61.40297 * 16 2 1 18 18 N 1.46499 * 109.50146 * 301.34074 * 16 2 1 19 19 C 1.34779 * 120.00478 * 155.06099 * 18 16 2 20 20 O 1.21564 * 119.99589 * 0.02562 * 19 18 16 21 21 C 1.47729 * 119.99955 * 179.97438 * 19 18 16 22 22 N 1.33011 * 120.16559 * 5.69668 * 21 19 18 23 23 C 1.31728 * 120.01393 * 179.97438 * 22 21 19 24 24 C 1.38802 * 120.33700 * 359.97438 * 23 22 21 25 25 N 1.32024 * 120.33237 * 0.02562 * 24 23 22 26 26 C 1.32834 * 119.97867 * 359.97438 * 25 24 23 27 27 N 1.38281 * 120.16530 * 180.02562 * 26 25 24 28 28 H 1.09007 * 109.47063 * 300.03381 * 1 2 3 29 29 H 1.08995 * 109.47136 * 60.02683 * 1 2 3 30 30 H 1.08997 * 109.47098 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.49668 * 298.56426 * 4 2 1 32 32 H 1.09001 * 109.49902 * 58.66593 * 4 2 1 33 33 H 1.08996 * 109.58725 * 174.42491 * 5 4 2 34 34 H 1.09001 * 109.58911 * 294.70264 * 5 4 2 35 35 H 0.96992 * 119.99907 * 180.02562 * 10 9 7 36 36 H 1.08996 * 109.56177 * 293.78730 * 15 6 5 37 37 H 1.09001 * 109.61533 * 173.35296 * 15 6 5 38 38 H 0.97004 * 119.99647 * 335.06117 * 18 16 2 39 39 H 1.08000 * 119.83093 * 180.02562 * 23 22 21 40 40 H 1.08001 * 119.83706 * 179.97438 * 24 23 22 41 41 H 0.97002 * 119.99771 * 23.08573 * 27 26 25 42 42 H 0.97004 * 119.99980 * 203.07454 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7206 -1.2501 5 6 3.5713 -0.6884 -1.2642 6 7 4.0679 -1.2488 -0.0001 7 6 4.9760 -2.2736 -0.0001 8 1 4.9986 -2.9752 0.8207 9 6 5.8677 -2.4107 -1.0550 10 7 6.0580 -1.4112 -1.8901 11 14 6.7977 -4.0138 -1.2896 12 1 5.8303 -5.1223 -1.4911 13 1 7.6798 -3.9047 -2.4793 14 1 7.6218 -4.2887 -0.0853 15 6 3.5714 -0.6892 1.2647 16 6 2.0398 -0.7207 1.2500 17 1 1.6973 -1.7555 1.2385 18 7 1.5255 -0.0488 2.4460 19 6 1.3982 -0.7320 3.6007 20 8 1.7107 -1.9058 3.6500 21 6 0.8802 -0.0542 4.8068 22 7 0.4325 1.1960 4.7305 23 6 -0.0293 1.7974 5.8077 24 6 -0.0525 1.1328 7.0261 25 7 0.3885 -0.1082 7.1171 26 6 0.8569 -0.7270 6.0391 27 7 1.3193 -2.0270 6.1300 28 1 -0.3633 0.5144 0.8897 29 1 -0.3633 0.5134 -0.8902 30 1 -0.3633 -1.0276 0.0005 31 1 1.6978 -1.7555 -1.2383 32 1 1.6572 -0.2205 -2.1398 33 1 3.9416 -1.2843 -2.0984 34 1 3.9142 0.3408 -1.3698 35 1 6.6808 -1.5072 -2.6274 36 1 3.9147 0.3400 1.3681 37 1 3.9412 -1.2856 2.0988 38 1 1.2766 0.8879 2.4067 39 1 -0.3925 2.8124 5.7423 40 1 -0.4325 1.6338 7.9042 41 1 1.0140 -2.6011 6.8498 42 1 1.9487 -2.3649 5.4738 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000965687353.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:12 Heat of formation + Delta-G solvation = 13.444225 kcal Electronic energy + Delta-G solvation = -25426.756014 eV Core-core repulsion = 21827.397828 eV Total energy + Delta-G solvation = -3599.358187 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.25936 -40.75282 -39.14811 -36.71153 -35.99318 -34.73796 -34.34042 -33.03435 -31.22185 -30.16723 -28.93478 -26.61778 -25.81353 -24.64645 -23.84786 -22.71373 -21.81958 -21.09520 -19.41774 -18.74316 -18.71422 -18.49662 -17.28555 -16.99839 -16.57518 -16.25066 -15.98897 -15.58818 -15.53517 -15.28276 -15.06653 -14.84868 -14.53725 -14.29580 -14.14738 -13.58775 -13.20925 -13.12262 -12.74649 -12.73732 -12.65979 -12.63988 -12.33080 -12.04882 -11.96573 -11.70374 -11.59009 -11.47531 -11.27412 -11.17165 -10.59910 -10.16597 -10.14991 -9.11270 -8.68711 -7.90279 -5.37596 -0.46318 0.26328 1.44485 1.46853 1.54032 1.70385 1.98716 2.45040 2.51483 2.84225 3.12927 3.24209 3.42151 3.58180 3.72880 3.76029 4.00305 4.10884 4.17522 4.25299 4.43946 4.50131 4.53142 4.65040 4.75533 4.91491 4.94469 5.02122 5.08045 5.17310 5.21401 5.34584 5.41944 5.44866 5.54054 5.62263 5.77005 5.96377 6.28946 6.36598 6.42471 6.60197 6.97394 7.12232 7.18174 7.81269 8.32308 9.15306 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.019356 B = 0.003799 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.239845 B = 7367.691002 C = 8323.707092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.083 4.083 3 H 0.077 0.923 4 C -0.122 4.122 5 C 0.173 3.827 6 N -0.605 5.605 7 C -0.270 4.270 8 H 0.056 0.944 9 C -0.043 4.043 10 N -0.930 5.930 11 Si 0.967 3.033 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.278 1.278 15 C 0.145 3.855 16 C 0.149 3.851 17 H 0.063 0.937 18 N -0.686 5.686 19 C 0.576 3.424 20 O -0.571 6.571 21 C -0.073 4.073 22 N -0.389 5.389 23 C -0.010 4.010 24 C 0.144 3.856 25 N -0.520 5.520 26 C 0.394 3.606 27 N -0.820 5.820 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.044 0.956 31 H 0.048 0.952 32 H 0.083 0.917 33 H 0.056 0.944 34 H 0.003 0.997 35 H 0.252 0.748 36 H 0.016 0.984 37 H 0.034 0.966 38 H 0.416 0.584 39 H 0.215 0.785 40 H 0.222 0.778 41 H 0.410 0.590 42 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.505 8.581 14.611 23.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.096 0.904 4 C -0.161 4.161 5 C 0.047 3.953 6 N -0.329 5.329 7 C -0.400 4.400 8 H 0.073 0.927 9 C -0.239 4.239 10 N -0.576 5.576 11 Si 0.795 3.205 12 H -0.204 1.204 13 H -0.213 1.213 14 H -0.204 1.204 15 C 0.018 3.982 16 C 0.043 3.957 17 H 0.081 0.919 18 N -0.336 5.336 19 C 0.363 3.637 20 O -0.450 6.450 21 C -0.218 4.218 22 N -0.106 5.106 23 C -0.178 4.178 24 C -0.022 4.022 25 N -0.243 5.243 26 C 0.152 3.848 27 N -0.369 5.369 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.075 0.925 34 H 0.021 0.979 35 H 0.061 0.939 36 H 0.034 0.966 37 H 0.053 0.947 38 H 0.253 0.747 39 H 0.231 0.769 40 H 0.238 0.762 41 H 0.241 0.759 42 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -16.072 7.630 14.373 22.871 hybrid contribution 1.072 -0.859 -0.218 1.391 sum -15.000 6.771 14.155 21.707 Atomic orbital electron populations 1.21757 0.93020 1.01690 1.02677 1.21233 0.96896 0.99310 0.92821 0.90442 1.22075 0.96721 0.99856 0.97441 1.20706 0.90584 0.95374 0.88587 1.44189 1.48314 1.39682 1.00689 1.19392 1.10035 1.03452 1.07098 0.92671 1.25760 0.98129 1.00441 0.99553 1.70153 1.38166 1.30890 1.18351 0.85359 0.78165 0.79880 0.77140 1.20448 1.21329 1.20405 1.21209 0.92706 0.95645 0.88631 1.21351 0.93826 0.96477 0.84028 0.91869 1.45673 1.63832 1.15163 1.08930 1.17901 0.77262 0.85522 0.83041 1.90565 1.53082 1.17051 1.84351 1.21099 1.12826 0.95002 0.92878 1.68060 1.03439 1.05970 1.33130 1.24229 1.01659 1.03462 0.88426 1.24701 0.88584 0.88228 1.00678 1.68343 1.16119 1.12194 1.27658 1.19208 0.88996 0.87838 0.88749 1.42772 1.49804 1.09016 1.35324 0.91819 0.90750 0.93655 0.93340 0.89859 0.92521 0.97893 0.93854 0.96597 0.94708 0.74652 0.76861 0.76179 0.75891 0.74032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 9.02 71.98 0.65 -2.64 16 2 C -0.08 -2.63 2.27 -10.77 -0.02 -2.65 16 3 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 4 C -0.12 -4.48 5.36 30.67 0.16 -4.31 16 5 C 0.17 8.39 5.29 86.36 0.46 8.85 16 6 N -0.61 -31.91 2.99 -699.07 -2.09 -34.00 16 7 C -0.27 -15.70 9.58 84.03 0.81 -14.90 16 8 H 0.06 3.24 7.88 -2.91 -0.02 3.22 16 9 C -0.04 -2.47 4.95 84.86 0.42 -2.05 16 10 N -0.93 -55.60 11.15 21.65 0.24 -55.36 16 11 Si 0.97 46.28 29.58 68.60 2.03 48.31 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 13 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 14 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 15 C 0.15 6.60 6.09 86.36 0.53 7.13 16 16 C 0.15 5.47 2.06 45.07 0.09 5.57 16 17 H 0.06 2.66 7.58 -2.38 -0.02 2.64 16 18 N -0.69 -21.04 4.36 -445.14 -1.94 -22.98 16 19 C 0.58 18.80 7.75 86.75 0.67 19.47 16 20 O -0.57 -21.71 13.46 -3.92 -0.05 -21.77 16 21 C -0.07 -1.97 6.77 42.01 0.28 -1.69 16 22 N -0.39 -8.47 9.71 -183.95 -1.79 -10.25 16 23 C -0.01 -0.14 11.21 84.84 0.95 0.82 16 24 C 0.14 1.79 11.22 84.80 0.95 2.74 16 25 N -0.52 -10.65 10.52 -191.86 -2.02 -12.67 16 26 C 0.39 9.97 7.77 133.49 1.04 11.01 16 27 N -0.82 -19.88 8.57 -54.83 -0.47 -20.35 16 28 H 0.06 1.41 7.36 -2.38 -0.02 1.39 16 29 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.06 3.11 6.05 -2.39 -0.01 3.10 16 34 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 35 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 36 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.03 1.70 7.93 -2.39 -0.02 1.68 16 38 H 0.42 10.86 7.67 -92.70 -0.71 10.14 16 39 H 0.21 0.91 8.06 -2.91 -0.02 0.88 16 40 H 0.22 0.48 8.06 -2.91 -0.02 0.45 16 41 H 0.41 7.83 8.95 -92.71 -0.83 7.00 16 42 H 0.42 11.78 6.02 -92.71 -0.56 11.23 16 Total: -1.00 -73.26 341.88 -0.13 -73.38 By element: Atomic # 1 Polarization: 29.37 SS G_CDS: -1.02 Total: 28.35 kcal Atomic # 6 Polarization: 20.34 SS G_CDS: 6.99 Total: 27.33 kcal Atomic # 7 Polarization: -147.54 SS G_CDS: -8.07 Total: -155.61 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.05 Total: -21.77 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -73.26 -0.13 -73.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965687353.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.827 kcal (2) G-P(sol) polarization free energy of solvation -73.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds