Wall clock time and date at job start Tue Mar 31 2020 09:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.45106 * 2 1 4 4 C 1.53036 * 109.48890 * 119.94885 * 2 1 3 5 5 C 1.53194 * 109.34465 * 181.35356 * 4 2 1 6 6 N 1.46919 * 108.77544 * 305.38363 * 5 4 2 7 7 C 1.36940 * 120.63096 * 233.58768 * 6 5 4 8 8 H 1.07998 * 120.00228 * 30.79668 * 7 6 5 9 9 C 1.38815 * 119.99972 * 210.79948 * 7 6 5 10 10 N 1.31621 * 119.99798 * 17.57332 * 9 7 6 11 11 Si 1.86804 * 119.99910 * 197.56991 * 9 7 6 12 12 H 1.48498 * 109.46712 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.46792 * 119.99992 * 11 9 7 14 14 H 1.48497 * 109.47049 * 239.99906 * 11 9 7 15 15 C 1.46929 * 118.74131 * 53.60009 * 6 5 4 16 16 C 1.53042 * 109.46293 * 240.03515 * 2 1 3 17 17 H 1.08998 * 109.49295 * 298.59690 * 16 2 1 18 18 N 1.46498 * 109.49819 * 58.65865 * 16 2 1 19 19 C 1.34768 * 120.00116 * 204.93484 * 18 16 2 20 20 O 1.21572 * 120.00279 * 0.02562 * 19 18 16 21 21 C 1.47738 * 119.99965 * 180.02562 * 19 18 16 22 22 N 1.33014 * 120.16313 * 354.42936 * 21 19 18 23 23 C 1.31731 * 120.01036 * 180.27162 * 22 21 19 24 24 C 1.38793 * 120.34022 * 359.72771 * 23 22 21 25 25 N 1.32030 * 120.33072 * 359.97438 * 24 23 22 26 26 C 1.32834 * 119.98195 * 0.02562 * 25 24 23 27 27 N 1.38269 * 120.17043 * 179.97438 * 26 25 24 28 28 H 1.09006 * 109.47038 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47371 * 299.96481 * 1 2 3 30 30 H 1.09001 * 109.47250 * 59.96897 * 1 2 3 31 31 H 1.09009 * 109.47222 * 61.40041 * 4 2 1 32 32 H 1.09001 * 109.49879 * 301.32235 * 4 2 1 33 33 H 1.08998 * 109.58727 * 185.59096 * 5 4 2 34 34 H 1.09004 * 109.58321 * 65.16766 * 5 4 2 35 35 H 0.97002 * 119.99317 * 180.02562 * 10 9 7 36 36 H 1.08993 * 109.58658 * 186.60477 * 15 6 5 37 37 H 1.09002 * 109.57944 * 66.18459 * 15 6 5 38 38 H 0.97004 * 119.99636 * 24.93941 * 18 16 2 39 39 H 1.07997 * 119.82629 * 179.70869 * 23 22 21 40 40 H 1.08000 * 119.83518 * 179.97438 * 24 23 22 41 41 H 0.96998 * 120.00317 * 163.36028 * 27 26 25 42 42 H 0.97007 * 120.00161 * 343.08851 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0405 -0.7202 1.2500 5 6 3.5721 -0.6888 1.2639 6 7 4.0680 -1.2494 -0.0004 7 6 4.9760 -2.2745 -0.0004 8 1 4.9760 -2.9960 0.8032 9 6 5.8966 -2.3861 -1.0334 10 7 6.1384 -1.3541 -1.8137 11 14 6.7924 -4.0009 -1.3157 12 1 6.3455 -4.9972 -0.3093 13 1 6.4884 -4.5035 -2.6796 14 1 8.2555 -3.7852 -1.1823 15 6 3.5713 -0.6893 -1.2646 16 6 2.0399 -0.7207 -1.2501 17 1 1.6973 -1.7554 -1.2385 18 7 1.5255 -0.0487 -2.4459 19 6 1.3984 -0.7319 -3.6007 20 8 1.7100 -1.9059 -3.6499 21 6 0.8802 -0.0540 -4.8068 22 7 0.4347 1.1970 -4.7309 23 6 -0.0316 1.7967 -5.8072 24 6 -0.0562 1.1318 -7.0252 25 7 0.3881 -0.1081 -7.1170 26 6 0.8611 -0.7253 -6.0400 27 7 1.3268 -2.0239 -6.1316 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5133 0.8903 30 1 -0.3634 0.5143 -0.8897 31 1 1.6979 -1.7550 1.2386 32 1 1.6583 -0.2199 2.1398 33 1 3.9423 -1.2847 2.0981 34 1 3.9154 0.3406 1.3667 35 1 6.7815 -1.4323 -2.5357 36 1 3.9412 -1.2855 -2.0987 37 1 3.9148 0.3401 -1.3680 38 1 1.2766 0.8880 -2.4066 39 1 -0.3969 2.8109 -5.7412 40 1 -0.4406 1.6311 -7.9023 41 1 1.8846 -2.3900 -5.4275 42 1 1.0926 -2.5703 -6.8982 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000965687354.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:15 Heat of formation + Delta-G solvation = 35.972578 kcal Electronic energy + Delta-G solvation = -25753.765024 eV Core-core repulsion = 22155.383740 eV Total energy + Delta-G solvation = -3598.381284 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.22345 -39.33591 -37.61152 -35.59400 -34.25807 -33.67943 -33.03921 -30.98485 -30.04499 -28.69584 -27.33290 -25.47360 -24.05485 -23.62025 -22.38185 -21.06795 -20.38067 -19.47881 -18.37695 -17.56835 -17.54194 -16.77726 -15.98615 -15.36921 -15.25891 -14.93952 -14.72421 -14.17076 -14.01222 -13.72560 -13.59987 -13.40350 -13.26987 -12.95846 -12.41446 -12.01634 -11.79700 -11.67305 -11.63882 -11.58180 -10.91768 -10.73930 -10.71542 -10.55611 -10.44504 -10.16386 -10.08197 -9.94650 -9.74675 -9.49923 -9.12576 -8.60514 -8.43951 -8.07245 -6.62194 -5.76975 -3.21998 0.53658 1.20778 2.95112 3.22554 3.40557 3.48346 3.50451 3.56798 3.88626 4.15499 4.28768 4.52442 4.61205 5.04475 5.16472 5.17935 5.25704 5.29117 5.40631 5.54084 5.60584 5.93480 6.04711 6.05138 6.11098 6.15559 6.26821 6.39636 6.48112 6.53226 6.73617 6.76544 6.86143 6.98058 6.98844 7.24169 7.26739 7.48810 7.67180 7.82468 7.86598 8.03111 8.48070 8.54754 9.22363 9.85940 10.43081 11.31068 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.013576 B = 0.005029 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.924322 B = 5566.371542 C = 7060.952011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.068 0.932 4 C -0.125 4.125 5 C 0.142 3.858 6 N -0.587 5.587 7 C -0.258 4.258 8 H 0.065 0.935 9 C 0.009 3.991 10 N -0.897 5.897 11 Si 0.900 3.100 12 H -0.276 1.276 13 H -0.288 1.288 14 H -0.290 1.290 15 C 0.170 3.830 16 C 0.122 3.878 17 H 0.084 0.916 18 N -0.692 5.692 19 C 0.581 3.419 20 O -0.538 6.538 21 C -0.039 4.039 22 N -0.374 5.374 23 C -0.027 4.027 24 C 0.129 3.871 25 N -0.511 5.511 26 C 0.409 3.591 27 N -0.816 5.816 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.018 0.982 35 H 0.253 0.747 36 H 0.087 0.913 37 H 0.019 0.981 38 H 0.404 0.596 39 H 0.170 0.830 40 H 0.172 0.828 41 H 0.430 0.570 42 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.358 6.561 -6.163 16.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.086 0.914 4 C -0.165 4.165 5 C 0.016 3.984 6 N -0.309 5.309 7 C -0.387 4.387 8 H 0.083 0.917 9 C -0.190 4.190 10 N -0.540 5.540 11 Si 0.729 3.271 12 H -0.201 1.201 13 H -0.215 1.215 14 H -0.217 1.217 15 C 0.042 3.958 16 C 0.016 3.984 17 H 0.102 0.898 18 N -0.340 5.340 19 C 0.365 3.635 20 O -0.416 6.416 21 C -0.188 4.188 22 N -0.091 5.091 23 C -0.192 4.192 24 C -0.036 4.036 25 N -0.235 5.235 26 C 0.166 3.834 27 N -0.366 5.366 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.036 0.964 35 H 0.063 0.937 36 H 0.106 0.894 37 H 0.037 0.963 38 H 0.239 0.761 39 H 0.188 0.812 40 H 0.189 0.811 41 H 0.274 0.726 42 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -13.896 5.617 -6.170 16.208 hybrid contribution 0.444 -0.448 -0.509 0.811 sum -13.451 5.169 -6.680 15.883 Atomic orbital electron populations 1.21854 0.95924 1.01519 1.00921 1.21293 0.94661 0.99763 0.95376 0.91363 1.22070 0.98931 1.00015 0.95444 1.20978 0.90768 0.96512 0.90189 1.43926 1.48073 1.39869 0.99076 1.19156 1.08232 1.02135 1.09197 0.91695 1.25094 0.96725 0.97099 1.00091 1.70052 1.35485 1.27902 1.20582 0.86272 0.79028 0.83799 0.77961 1.20125 1.21478 1.21747 1.21027 0.86392 0.97531 0.90805 1.22098 0.98386 0.96466 0.81409 0.89753 1.45829 1.63740 1.14627 1.09814 1.17428 0.77950 0.85757 0.82335 1.90539 1.51874 1.15740 1.83423 1.21519 1.09877 0.93527 0.93874 1.68080 1.02917 1.06625 1.31483 1.23359 1.04367 1.02155 0.89361 1.23753 0.91444 0.89507 0.98914 1.68194 1.15948 1.10880 1.28471 1.19112 0.88179 0.87532 0.88605 1.43066 1.55049 1.09512 1.28958 0.93010 0.93081 0.93033 0.92113 0.92559 0.92572 0.96377 0.93743 0.89431 0.96278 0.76137 0.81245 0.81128 0.72642 0.77079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.02 37.15 0.34 -1.61 16 2 C -0.09 -1.49 2.27 -90.58 -0.21 -1.69 16 3 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 4 C -0.12 -2.10 5.36 -26.61 -0.14 -2.25 16 5 C 0.14 2.93 6.52 -3.71 -0.02 2.91 16 6 N -0.59 -14.79 2.98 -172.32 -0.51 -15.31 16 7 C -0.26 -7.18 9.55 -15.06 -0.14 -7.33 16 8 H 0.07 1.78 7.89 -52.49 -0.41 1.36 16 9 C 0.01 0.27 4.87 -17.43 -0.08 0.18 16 10 N -0.90 -26.64 11.44 55.49 0.64 -26.00 16 11 Si 0.90 22.26 29.59 -169.99 -5.03 17.23 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 14 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 15 C 0.17 4.10 4.87 -3.71 -0.02 4.09 16 16 C 0.12 2.35 2.06 -67.81 -0.14 2.21 16 17 H 0.08 1.83 7.58 -51.93 -0.39 1.43 16 18 N -0.69 -11.87 4.36 -54.67 -0.24 -12.11 16 19 C 0.58 10.54 7.75 -12.38 -0.10 10.44 16 20 O -0.54 -11.07 13.40 5.30 0.07 -11.00 16 21 C -0.04 -0.61 6.77 -82.65 -0.56 -1.17 16 22 N -0.37 -5.09 9.71 -9.49 -0.09 -5.18 16 23 C -0.03 -0.28 11.21 -17.39 -0.19 -0.47 16 24 C 0.13 1.25 11.22 -17.26 -0.19 1.06 16 25 N -0.51 -6.62 10.52 -12.00 -0.13 -6.75 16 26 C 0.41 6.07 7.77 -154.87 -1.20 4.87 16 27 N -0.82 -11.34 8.71 31.32 0.27 -11.07 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.66 7.36 -51.93 -0.38 0.28 16 31 H 0.06 1.07 8.14 -51.92 -0.42 0.64 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 34 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.09 2.47 6.29 -51.93 -0.33 2.14 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.40 6.13 7.67 -40.82 -0.31 5.82 16 39 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.17 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.43 6.82 5.75 -40.82 -0.23 6.59 16 42 H 0.40 4.46 8.95 -40.82 -0.37 4.10 16 LS Contribution 342.11 15.07 5.16 5.16 Total: -1.00 -32.59 342.11 -8.32 -40.90 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: -5.78 Total: 12.88 kcal Atomic # 6 Polarization: 13.91 SS G_CDS: -2.67 Total: 11.24 kcal Atomic # 7 Polarization: -76.35 SS G_CDS: -0.06 Total: -76.41 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.07 Total: -11.00 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.03 Total: 17.23 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.59 -8.32 -40.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965687354.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.876 kcal (2) G-P(sol) polarization free energy of solvation -32.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds