Wall clock time and date at job start Tue Mar 31 2020 09:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.45106 * 2 1 4 4 C 1.53036 * 109.48890 * 119.94885 * 2 1 3 5 5 C 1.53194 * 109.34465 * 181.35356 * 4 2 1 6 6 N 1.46919 * 108.77544 * 305.38363 * 5 4 2 7 7 C 1.36940 * 120.63096 * 233.58768 * 6 5 4 8 8 H 1.07998 * 120.00228 * 30.79668 * 7 6 5 9 9 C 1.38815 * 119.99972 * 210.79948 * 7 6 5 10 10 N 1.31621 * 119.99798 * 17.57332 * 9 7 6 11 11 Si 1.86804 * 119.99910 * 197.56991 * 9 7 6 12 12 H 1.48498 * 109.46712 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.46792 * 119.99992 * 11 9 7 14 14 H 1.48497 * 109.47049 * 239.99906 * 11 9 7 15 15 C 1.46929 * 118.74131 * 53.60009 * 6 5 4 16 16 C 1.53042 * 109.46293 * 240.03515 * 2 1 3 17 17 H 1.08998 * 109.49295 * 298.59690 * 16 2 1 18 18 N 1.46498 * 109.49819 * 58.65865 * 16 2 1 19 19 C 1.34768 * 120.00116 * 204.93484 * 18 16 2 20 20 O 1.21572 * 120.00279 * 0.02562 * 19 18 16 21 21 C 1.47738 * 119.99965 * 180.02562 * 19 18 16 22 22 N 1.33014 * 120.16313 * 354.42936 * 21 19 18 23 23 C 1.31731 * 120.01036 * 180.27162 * 22 21 19 24 24 C 1.38793 * 120.34022 * 359.72771 * 23 22 21 25 25 N 1.32030 * 120.33072 * 359.97438 * 24 23 22 26 26 C 1.32834 * 119.98195 * 0.02562 * 25 24 23 27 27 N 1.38269 * 120.17043 * 179.97438 * 26 25 24 28 28 H 1.09006 * 109.47038 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47371 * 299.96481 * 1 2 3 30 30 H 1.09001 * 109.47250 * 59.96897 * 1 2 3 31 31 H 1.09009 * 109.47222 * 61.40041 * 4 2 1 32 32 H 1.09001 * 109.49879 * 301.32235 * 4 2 1 33 33 H 1.08998 * 109.58727 * 185.59096 * 5 4 2 34 34 H 1.09004 * 109.58321 * 65.16766 * 5 4 2 35 35 H 0.97002 * 119.99317 * 180.02562 * 10 9 7 36 36 H 1.08993 * 109.58658 * 186.60477 * 15 6 5 37 37 H 1.09002 * 109.57944 * 66.18459 * 15 6 5 38 38 H 0.97004 * 119.99636 * 24.93941 * 18 16 2 39 39 H 1.07997 * 119.82629 * 179.70869 * 23 22 21 40 40 H 1.08000 * 119.83518 * 179.97438 * 24 23 22 41 41 H 0.96998 * 120.00317 * 163.36028 * 27 26 25 42 42 H 0.97007 * 120.00161 * 343.08851 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0405 -0.7202 1.2500 5 6 3.5721 -0.6888 1.2639 6 7 4.0680 -1.2494 -0.0004 7 6 4.9760 -2.2745 -0.0004 8 1 4.9760 -2.9960 0.8032 9 6 5.8966 -2.3861 -1.0334 10 7 6.1384 -1.3541 -1.8137 11 14 6.7924 -4.0009 -1.3157 12 1 6.3455 -4.9972 -0.3093 13 1 6.4884 -4.5035 -2.6796 14 1 8.2555 -3.7852 -1.1823 15 6 3.5713 -0.6893 -1.2646 16 6 2.0399 -0.7207 -1.2501 17 1 1.6973 -1.7554 -1.2385 18 7 1.5255 -0.0487 -2.4459 19 6 1.3984 -0.7319 -3.6007 20 8 1.7100 -1.9059 -3.6499 21 6 0.8802 -0.0540 -4.8068 22 7 0.4347 1.1970 -4.7309 23 6 -0.0316 1.7967 -5.8072 24 6 -0.0562 1.1318 -7.0252 25 7 0.3881 -0.1081 -7.1170 26 6 0.8611 -0.7253 -6.0400 27 7 1.3268 -2.0239 -6.1316 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5133 0.8903 30 1 -0.3634 0.5143 -0.8897 31 1 1.6979 -1.7550 1.2386 32 1 1.6583 -0.2199 2.1398 33 1 3.9423 -1.2847 2.0981 34 1 3.9154 0.3406 1.3667 35 1 6.7815 -1.4323 -2.5357 36 1 3.9412 -1.2855 -2.0987 37 1 3.9148 0.3401 -1.3680 38 1 1.2766 0.8880 -2.4066 39 1 -0.3969 2.8109 -5.7412 40 1 -0.4406 1.6311 -7.9023 41 1 1.8846 -2.3900 -5.4275 42 1 1.0926 -2.5703 -6.8982 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000965687354.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:14 Heat of formation + Delta-G solvation = 11.276338 kcal Electronic energy + Delta-G solvation = -25754.835933 eV Core-core repulsion = 22155.383740 eV Total energy + Delta-G solvation = -3599.452193 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.26640 -40.73153 -39.13948 -36.71446 -35.93878 -34.76963 -34.52499 -32.85146 -31.25044 -30.12333 -28.97790 -26.62381 -25.82986 -24.67424 -23.84334 -22.69181 -21.81058 -21.04866 -19.45466 -18.78335 -18.72652 -18.53312 -17.29711 -16.88625 -16.68393 -16.19679 -15.96502 -15.63044 -15.46723 -15.26334 -15.10114 -14.85754 -14.51695 -14.30298 -14.11680 -13.55874 -13.28344 -13.07682 -12.80096 -12.78709 -12.65748 -12.59555 -12.35835 -12.17410 -11.92522 -11.64919 -11.63151 -11.52698 -11.20863 -11.16393 -10.58825 -10.15874 -10.14664 -9.11604 -8.67696 -7.91515 -5.39659 -0.46079 0.27026 1.39832 1.43213 1.52971 1.70532 2.02421 2.43575 2.48786 2.84638 3.12436 3.25482 3.39895 3.56531 3.76247 3.80690 3.99489 4.14180 4.16808 4.26060 4.47165 4.49655 4.57756 4.65579 4.73420 4.91969 4.97785 5.11899 5.17373 5.19733 5.24561 5.34095 5.39282 5.43968 5.50300 5.61654 5.72386 5.93307 6.25994 6.34875 6.42797 6.59589 6.95667 7.09853 7.20963 7.82121 8.33961 9.13570 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.013576 B = 0.005029 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.924322 B = 5566.371542 C = 7060.952011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.086 4.086 3 H 0.076 0.924 4 C -0.114 4.114 5 C 0.135 3.865 6 N -0.607 5.607 7 C -0.266 4.266 8 H 0.067 0.933 9 C -0.045 4.045 10 N -0.930 5.930 11 Si 0.961 3.039 12 H -0.263 1.263 13 H -0.296 1.296 14 H -0.287 1.287 15 C 0.184 3.816 16 C 0.139 3.861 17 H 0.057 0.943 18 N -0.685 5.685 19 C 0.574 3.426 20 O -0.575 6.575 21 C -0.078 4.078 22 N -0.387 5.387 23 C -0.013 4.013 24 C 0.147 3.853 25 N -0.521 5.521 26 C 0.394 3.606 27 N -0.819 5.819 28 H 0.044 0.956 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.097 0.903 33 H 0.057 0.943 34 H 0.019 0.981 35 H 0.247 0.753 36 H 0.039 0.961 37 H -0.004 1.004 38 H 0.414 0.586 39 H 0.217 0.783 40 H 0.225 0.775 41 H 0.420 0.580 42 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.881 8.462 -6.409 19.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.105 4.105 3 H 0.094 0.906 4 C -0.153 4.153 5 C 0.011 3.989 6 N -0.331 5.331 7 C -0.396 4.396 8 H 0.085 0.915 9 C -0.241 4.241 10 N -0.576 5.576 11 Si 0.789 3.211 12 H -0.187 1.187 13 H -0.223 1.223 14 H -0.213 1.213 15 C 0.056 3.944 16 C 0.033 3.967 17 H 0.076 0.924 18 N -0.334 5.334 19 C 0.360 3.640 20 O -0.455 6.455 21 C -0.223 4.223 22 N -0.104 5.104 23 C -0.181 4.181 24 C -0.020 4.020 25 N -0.245 5.245 26 C 0.152 3.848 27 N -0.368 5.368 28 H 0.063 0.937 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.115 0.885 33 H 0.075 0.925 34 H 0.037 0.963 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.014 0.986 38 H 0.252 0.748 39 H 0.233 0.767 40 H 0.241 0.759 41 H 0.261 0.739 42 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -16.438 7.496 -6.378 19.159 hybrid contribution 1.154 -0.865 -0.552 1.544 sum -15.284 6.631 -6.930 18.044 Atomic orbital electron populations 1.21756 0.93034 1.01677 1.02671 1.21267 0.96913 0.99337 0.92959 0.90555 1.21961 0.95643 1.00319 0.97411 1.21186 0.93569 0.96109 0.88083 1.44202 1.48160 1.39866 1.00846 1.19504 1.08213 1.02892 1.09041 0.91522 1.25842 0.98059 0.99972 1.00267 1.70199 1.36436 1.29750 1.21173 0.85310 0.77901 0.80438 0.77481 1.18691 1.22274 1.21342 1.20706 0.89666 0.94827 0.89156 1.21608 0.94829 0.96119 0.84139 0.92433 1.45646 1.63612 1.15005 1.09147 1.17951 0.77226 0.85555 0.83228 1.90512 1.53368 1.17423 1.84166 1.21025 1.13381 0.94988 0.92936 1.68043 1.03368 1.05738 1.33260 1.24245 1.01890 1.03564 0.88422 1.24729 0.88480 0.88112 1.00667 1.68321 1.16212 1.12422 1.27548 1.19230 0.88757 0.87768 0.89029 1.42995 1.54959 1.09904 1.28979 0.93662 0.90219 0.92376 0.92863 0.88505 0.92473 0.96265 0.94389 0.94286 0.98551 0.74837 0.76661 0.75913 0.73932 0.75949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 9.02 71.98 0.65 -2.60 16 2 C -0.09 -2.66 2.27 -10.77 -0.02 -2.69 16 3 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 4 C -0.11 -3.64 5.36 30.67 0.16 -3.48 16 5 C 0.14 5.59 6.52 86.36 0.56 6.15 16 6 N -0.61 -31.68 2.98 -699.11 -2.08 -33.77 16 7 C -0.27 -15.34 9.55 84.03 0.80 -14.54 16 8 H 0.07 3.73 7.89 -2.91 -0.02 3.71 16 9 C -0.05 -2.67 4.87 84.86 0.41 -2.26 16 10 N -0.93 -58.10 11.44 21.65 0.25 -57.85 16 11 Si 0.96 47.41 29.59 68.60 2.03 49.44 16 12 H -0.26 -12.24 7.11 99.48 0.71 -11.53 16 13 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 14 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 15 C 0.18 9.39 4.87 86.36 0.42 9.81 16 16 C 0.14 5.57 2.06 45.07 0.09 5.66 16 17 H 0.06 2.63 7.58 -2.39 -0.02 2.61 16 18 N -0.68 -24.26 4.36 -445.15 -1.94 -26.20 16 19 C 0.57 21.90 7.75 86.76 0.67 22.57 16 20 O -0.57 -25.47 13.40 -3.94 -0.05 -25.53 16 21 C -0.08 -2.48 6.77 42.01 0.28 -2.20 16 22 N -0.39 -9.87 9.71 -183.94 -1.79 -11.66 16 23 C -0.01 -0.22 11.21 84.84 0.95 0.73 16 24 C 0.15 2.24 11.22 84.80 0.95 3.19 16 25 N -0.52 -12.49 10.52 -191.87 -2.02 -14.50 16 26 C 0.39 11.74 7.77 133.50 1.04 12.77 16 27 N -0.82 -24.00 8.71 -54.83 -0.48 -24.48 16 28 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 29 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.06 1.34 7.36 -2.39 -0.02 1.33 16 31 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 32 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.06 2.30 7.93 -2.39 -0.02 2.28 16 34 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 36 H 0.04 2.36 6.29 -2.39 -0.02 2.34 16 37 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 38 H 0.41 12.58 7.67 -92.71 -0.71 11.87 16 39 H 0.22 1.43 8.06 -2.91 -0.02 1.41 16 40 H 0.22 0.99 8.06 -2.91 -0.02 0.96 16 41 H 0.42 14.47 5.75 -92.71 -0.53 13.94 16 42 H 0.41 9.59 8.95 -92.70 -0.83 8.76 16 Total: -1.00 -77.06 342.11 -0.10 -77.16 By element: Atomic # 1 Polarization: 35.25 SS G_CDS: -1.00 Total: 34.25 kcal Atomic # 6 Polarization: 26.16 SS G_CDS: 6.98 Total: 33.14 kcal Atomic # 7 Polarization: -160.41 SS G_CDS: -8.06 Total: -168.47 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.05 Total: -25.53 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.44 kcal Total: -77.06 -0.10 -77.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965687354.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.437 kcal (2) G-P(sol) polarization free energy of solvation -77.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds