Wall clock time and date at job start Tue Mar 31 2020 09:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.70601 * 2 1 4 4 C 1.52764 * 109.51230 * 239.87544 * 2 1 3 5 5 H 1.09002 * 109.56074 * 65.67184 * 4 2 1 6 6 N 1.46497 * 109.36318 * 305.62209 * 4 2 1 7 7 C 1.34775 * 120.00253 * 155.15611 * 6 4 2 8 8 O 1.21563 * 120.00011 * 0.02562 * 7 6 4 9 9 C 1.47728 * 119.99903 * 180.02562 * 7 6 4 10 10 N 1.33021 * 120.16516 * 354.92999 * 9 7 6 11 11 C 1.31724 * 120.01013 * 179.97438 * 10 9 7 12 12 C 1.38808 * 120.34214 * 0.02562 * 11 10 9 13 13 N 1.32025 * 120.32899 * 0.02562 * 12 11 10 14 14 C 1.32833 * 119.97973 * 359.67112 * 13 12 11 15 15 N 1.38269 * 120.16772 * 180.29818 * 14 13 12 16 16 C 1.53037 * 109.38435 * 185.70658 * 4 2 1 17 17 C 1.53041 * 109.53760 * 61.24394 * 16 4 2 18 18 C 1.53188 * 109.31228 * 298.63442 * 17 16 4 19 19 N 1.46931 * 108.77806 * 54.63572 * 18 17 16 20 20 C 1.36933 * 120.63374 * 126.37021 * 19 18 17 21 21 H 1.08003 * 119.99889 * 209.89308 * 20 19 18 22 22 C 1.38812 * 119.99969 * 29.88700 * 20 19 18 23 23 N 1.31620 * 119.99970 * 23.47785 * 22 20 19 24 24 Si 1.86798 * 119.99901 * 203.47021 * 22 20 19 25 25 H 1.48505 * 109.47198 * 180.02562 * 24 22 20 26 26 H 1.48500 * 109.47724 * 300.00791 * 24 22 20 27 27 H 1.48506 * 109.47177 * 60.00749 * 24 22 20 28 28 H 1.08989 * 109.47310 * 299.64960 * 1 2 3 29 29 H 1.09004 * 109.46623 * 59.65315 * 1 2 3 30 30 H 1.09003 * 109.46774 * 179.64449 * 1 2 3 31 31 H 0.97007 * 119.99687 * 335.15866 * 6 4 2 32 32 H 1.07997 * 119.83095 * 180.02562 * 11 10 9 33 33 H 1.08003 * 119.83237 * 179.97438 * 12 11 10 34 34 H 0.97002 * 120.00353 * 204.66910 * 15 14 13 35 35 H 0.97000 * 120.00171 * 24.66999 * 15 14 13 36 36 H 1.09000 * 109.46292 * 301.22476 * 16 4 2 37 37 H 1.09008 * 109.45039 * 181.25436 * 16 4 2 38 38 H 1.08995 * 109.49930 * 178.68411 * 17 16 4 39 39 H 1.09008 * 109.52318 * 58.59928 * 17 16 4 40 40 H 1.08998 * 109.58825 * 294.84917 * 18 17 16 41 41 H 1.09007 * 109.70747 * 174.48797 * 18 17 16 42 42 H 0.97001 * 120.00002 * 5.64775 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0403 -0.7227 -1.2454 5 1 1.7633 -0.1567 -2.1349 6 7 1.4438 -2.0591 -1.3101 7 6 1.3201 -2.6852 -2.4972 8 8 1.7041 -2.1411 -3.5142 9 6 0.7181 -4.0327 -2.5624 10 7 0.3893 -4.6727 -1.4436 11 6 -0.1478 -5.8739 -1.5054 12 6 -0.3735 -6.4788 -2.7341 13 7 -0.0514 -5.8562 -3.8529 14 6 0.4854 -4.6421 -3.8060 15 7 0.8185 -3.9839 -4.9754 16 6 3.5639 -0.8463 -1.1725 17 6 3.9523 -1.6687 0.0583 18 6 3.4644 -0.9519 1.3212 19 7 2.0225 -0.6995 1.1946 20 6 1.1535 -1.1134 2.1686 21 1 0.1386 -1.3774 1.9102 22 6 1.5771 -1.1937 3.4881 23 7 2.5991 -0.4717 3.8963 24 14 0.6965 -2.3262 4.6844 25 1 1.3371 -2.2293 6.0207 26 1 -0.7291 -1.9238 4.7891 27 1 0.7811 -3.7257 4.1948 28 1 -0.3633 0.5083 0.8930 29 1 -0.3633 0.5192 -0.8869 30 1 -0.3633 -1.0277 -0.0064 31 1 1.1377 -2.4934 -0.4985 32 1 -0.4140 -6.3908 -0.5952 33 1 -0.8140 -7.4641 -2.7751 34 1 1.5056 -3.2992 -4.9679 35 1 0.3651 -4.2068 -5.8035 36 1 4.0058 0.1474 -1.0995 37 1 3.9313 -1.3420 -2.0711 38 1 5.0363 -1.7762 0.0968 39 1 3.4909 -2.6545 -0.0018 40 1 3.9928 -0.0049 1.4311 41 1 3.6505 -1.5777 2.1941 42 1 3.0045 0.1763 3.2991 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993168116.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:58 Heat of formation + Delta-G solvation = 39.081788 kcal Electronic energy + Delta-G solvation = -26210.820569 eV Core-core repulsion = 22612.574110 eV Total energy + Delta-G solvation = -3598.246458 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.26196 -39.56202 -37.76977 -35.59299 -34.09922 -33.72764 -32.49604 -31.75483 -29.99075 -29.03403 -26.44297 -25.45221 -24.87394 -23.64702 -22.14097 -21.11383 -20.73705 -18.81106 -18.41518 -17.69517 -17.59751 -17.00245 -16.08710 -15.60713 -15.09952 -14.99695 -14.60384 -14.43333 -14.23114 -13.85087 -13.56349 -13.43072 -13.26193 -13.04883 -12.65153 -11.86289 -11.73612 -11.65050 -11.48699 -11.25249 -11.01312 -10.80337 -10.63404 -10.62445 -10.23628 -10.13029 -10.05987 -10.01348 -9.78934 -9.16631 -9.12859 -8.70493 -8.37527 -8.13191 -6.88310 -6.04011 -3.25593 0.49190 1.18137 2.87511 3.18529 3.49478 3.52893 3.53845 3.70359 3.83841 4.17093 4.27932 4.56962 4.60453 5.04802 5.14111 5.18961 5.22530 5.34552 5.44865 5.55891 5.62038 5.82380 6.02354 6.10811 6.14580 6.19459 6.33081 6.38034 6.49379 6.54259 6.62718 6.78780 6.84227 6.95118 6.98772 7.09760 7.19141 7.21310 7.49935 7.84147 8.00374 8.02830 8.47332 8.58752 9.10162 9.84494 10.28214 11.22994 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.015343 B = 0.005188 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.463397 B = 5395.500761 C = 6497.831479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.161 3.839 3 H 0.038 0.962 4 C 0.131 3.869 5 H 0.079 0.921 6 N -0.673 5.673 7 C 0.578 3.422 8 O -0.560 6.560 9 C -0.036 4.036 10 N -0.369 5.369 11 C -0.016 4.016 12 C 0.125 3.875 13 N -0.508 5.508 14 C 0.403 3.597 15 N -0.825 5.825 16 C -0.120 4.120 17 C -0.136 4.136 18 C 0.151 3.849 19 N -0.592 5.592 20 C -0.348 4.348 21 H 0.061 0.939 22 C -0.021 4.021 23 N -0.916 5.916 24 Si 1.062 2.938 25 H -0.287 1.287 26 H -0.294 1.294 27 H -0.292 1.292 28 H 0.064 0.936 29 H 0.038 0.962 30 H 0.055 0.945 31 H 0.421 0.579 32 H 0.173 0.827 33 H 0.173 0.827 34 H 0.427 0.573 35 H 0.399 0.601 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.049 0.951 39 H 0.058 0.942 40 H 0.017 0.983 41 H 0.078 0.922 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.788 -8.087 -13.464 16.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.054 3.946 3 H 0.056 0.944 4 C 0.024 3.976 5 H 0.097 0.903 6 N -0.323 5.323 7 C 0.363 3.637 8 O -0.440 6.440 9 C -0.184 4.184 10 N -0.085 5.085 11 C -0.181 4.181 12 C -0.040 4.040 13 N -0.231 5.231 14 C 0.161 3.839 15 N -0.377 5.377 16 C -0.159 4.159 17 C -0.176 4.176 18 C 0.026 3.974 19 N -0.317 5.317 20 C -0.477 4.477 21 H 0.079 0.921 22 C -0.223 4.223 23 N -0.556 5.556 24 Si 0.892 3.108 25 H -0.213 1.213 26 H -0.221 1.221 27 H -0.220 1.220 28 H 0.083 0.917 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.260 0.740 32 H 0.190 0.810 33 H 0.190 0.810 34 H 0.269 0.731 35 H 0.228 0.772 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.035 0.965 41 H 0.097 0.903 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.436 -8.138 -12.545 15.343 hybrid contribution -0.124 0.355 -1.502 1.548 sum -3.560 -7.783 -14.047 16.449 Atomic orbital electron populations 1.21767 0.95348 1.01648 1.00377 1.20623 0.93693 0.93668 0.86639 0.94412 1.21568 0.92952 0.82948 1.00088 0.90266 1.45850 1.59050 1.18192 1.09172 1.17509 0.78422 0.83480 0.84271 1.90451 1.52729 1.66406 1.34434 1.21592 1.09729 0.97766 0.89342 1.68213 1.03513 1.07766 1.29032 1.23497 1.02132 0.93093 0.99348 1.23803 0.92249 0.99777 0.88125 1.68210 1.16903 1.06302 1.31722 1.19088 0.89229 0.87920 0.87666 1.42827 1.44683 1.43297 1.06855 1.21772 0.95348 1.00486 0.98293 1.22035 0.99068 0.99740 0.96719 1.20967 0.84242 0.96743 0.95489 1.44204 1.02667 1.65181 1.19618 1.19921 0.96173 1.43490 0.88127 0.92119 1.25812 1.00033 1.00701 0.95779 1.70775 1.25561 1.21305 1.37986 0.83562 0.74997 0.76001 0.76223 1.21276 1.22077 1.21954 0.91700 0.94310 0.92609 0.73982 0.80971 0.81017 0.73102 0.77197 0.91747 0.92837 0.93225 0.92368 0.96542 0.90324 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 7.72 37.16 0.29 -2.22 16 2 C 0.16 3.18 3.18 -67.82 -0.22 2.97 16 3 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 4 C 0.13 2.32 2.32 -68.03 -0.16 2.16 16 5 H 0.08 1.37 7.58 -51.93 -0.39 0.98 16 6 N -0.67 -11.89 3.43 -54.89 -0.19 -12.08 16 7 C 0.58 9.83 7.76 -12.38 -0.10 9.74 16 8 O -0.56 -9.73 13.42 5.31 0.07 -9.65 16 9 C -0.04 -0.56 6.77 -82.65 -0.56 -1.12 16 10 N -0.37 -5.58 9.71 -9.49 -0.09 -5.67 16 11 C -0.02 -0.18 11.21 -17.39 -0.19 -0.37 16 12 C 0.12 1.26 11.22 -17.26 -0.19 1.06 16 13 N -0.51 -6.38 10.52 -11.99 -0.13 -6.51 16 14 C 0.40 5.62 7.77 -154.87 -1.20 4.42 16 15 N -0.82 -9.85 8.64 31.32 0.27 -9.58 16 16 C -0.12 -2.09 5.58 -26.69 -0.15 -2.24 16 17 C -0.14 -2.58 5.93 -26.61 -0.16 -2.73 16 18 C 0.15 3.39 4.69 -3.71 -0.02 3.37 16 19 N -0.59 -13.61 2.49 -165.02 -0.41 -14.02 16 20 C -0.35 -8.93 8.48 -15.06 -0.13 -9.06 16 21 H 0.06 1.56 6.29 -52.48 -0.33 1.23 16 22 C -0.02 -0.56 4.71 -17.43 -0.08 -0.64 16 23 N -0.92 -26.47 12.47 55.49 0.69 -25.78 16 24 Si 1.06 24.44 29.98 -169.99 -5.10 19.35 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 28 H 0.06 1.31 7.62 -51.94 -0.40 0.91 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 1.07 6.36 -51.93 -0.33 0.74 16 31 H 0.42 8.11 7.10 -40.82 -0.29 7.82 16 32 H 0.17 1.44 8.06 -52.49 -0.42 1.02 16 33 H 0.17 0.99 8.06 -52.48 -0.42 0.57 16 34 H 0.43 5.47 5.87 -40.82 -0.24 5.23 16 35 H 0.40 3.75 8.95 -40.82 -0.37 3.39 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.05 0.91 8.14 -51.92 -0.42 0.49 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.06 1.16 7.53 -51.92 -0.39 0.77 16 40 H 0.02 0.38 7.84 -51.93 -0.41 -0.03 16 41 H 0.08 1.99 6.41 -51.93 -0.33 1.66 16 42 H 0.27 7.84 6.67 -40.82 -0.27 7.57 16 LS Contribution 334.37 15.07 5.04 5.04 Total: -1.00 -30.00 334.37 -8.21 -38.21 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: -5.50 Total: 15.36 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: -2.87 Total: 5.34 kcal Atomic # 7 Polarization: -73.79 SS G_CDS: 0.14 Total: -73.64 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.07 Total: -9.65 kcal Atomic # 14 Polarization: 24.44 SS G_CDS: -5.10 Total: 19.35 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.00 -8.21 -38.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993168116.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.291 kcal (2) G-P(sol) polarization free energy of solvation -29.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds