Wall clock time and date at job start Tue Mar 31 2020 09:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.70601 * 2 1 4 4 C 1.52764 * 109.51230 * 239.87544 * 2 1 3 5 5 H 1.09002 * 109.56074 * 65.67184 * 4 2 1 6 6 N 1.46497 * 109.36318 * 305.62209 * 4 2 1 7 7 C 1.34775 * 120.00253 * 155.15611 * 6 4 2 8 8 O 1.21563 * 120.00011 * 0.02562 * 7 6 4 9 9 C 1.47728 * 119.99903 * 180.02562 * 7 6 4 10 10 N 1.33021 * 120.16516 * 354.92999 * 9 7 6 11 11 C 1.31724 * 120.01013 * 179.97438 * 10 9 7 12 12 C 1.38808 * 120.34214 * 0.02562 * 11 10 9 13 13 N 1.32025 * 120.32899 * 0.02562 * 12 11 10 14 14 C 1.32833 * 119.97973 * 359.67112 * 13 12 11 15 15 N 1.38269 * 120.16772 * 180.29818 * 14 13 12 16 16 C 1.53037 * 109.38435 * 185.70658 * 4 2 1 17 17 C 1.53041 * 109.53760 * 61.24394 * 16 4 2 18 18 C 1.53188 * 109.31228 * 298.63442 * 17 16 4 19 19 N 1.46931 * 108.77806 * 54.63572 * 18 17 16 20 20 C 1.36933 * 120.63374 * 126.37021 * 19 18 17 21 21 H 1.08003 * 119.99889 * 209.89308 * 20 19 18 22 22 C 1.38812 * 119.99969 * 29.88700 * 20 19 18 23 23 N 1.31620 * 119.99970 * 23.47785 * 22 20 19 24 24 Si 1.86798 * 119.99901 * 203.47021 * 22 20 19 25 25 H 1.48505 * 109.47198 * 180.02562 * 24 22 20 26 26 H 1.48500 * 109.47724 * 300.00791 * 24 22 20 27 27 H 1.48506 * 109.47177 * 60.00749 * 24 22 20 28 28 H 1.08989 * 109.47310 * 299.64960 * 1 2 3 29 29 H 1.09004 * 109.46623 * 59.65315 * 1 2 3 30 30 H 1.09003 * 109.46774 * 179.64449 * 1 2 3 31 31 H 0.97007 * 119.99687 * 335.15866 * 6 4 2 32 32 H 1.07997 * 119.83095 * 180.02562 * 11 10 9 33 33 H 1.08003 * 119.83237 * 179.97438 * 12 11 10 34 34 H 0.97002 * 120.00353 * 204.66910 * 15 14 13 35 35 H 0.97000 * 120.00171 * 24.66999 * 15 14 13 36 36 H 1.09000 * 109.46292 * 301.22476 * 16 4 2 37 37 H 1.09008 * 109.45039 * 181.25436 * 16 4 2 38 38 H 1.08995 * 109.49930 * 178.68411 * 17 16 4 39 39 H 1.09008 * 109.52318 * 58.59928 * 17 16 4 40 40 H 1.08998 * 109.58825 * 294.84917 * 18 17 16 41 41 H 1.09007 * 109.70747 * 174.48797 * 18 17 16 42 42 H 0.97001 * 120.00002 * 5.64775 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0403 -0.7227 -1.2454 5 1 1.7633 -0.1567 -2.1349 6 7 1.4438 -2.0591 -1.3101 7 6 1.3201 -2.6852 -2.4972 8 8 1.7041 -2.1411 -3.5142 9 6 0.7181 -4.0327 -2.5624 10 7 0.3893 -4.6727 -1.4436 11 6 -0.1478 -5.8739 -1.5054 12 6 -0.3735 -6.4788 -2.7341 13 7 -0.0514 -5.8562 -3.8529 14 6 0.4854 -4.6421 -3.8060 15 7 0.8185 -3.9839 -4.9754 16 6 3.5639 -0.8463 -1.1725 17 6 3.9523 -1.6687 0.0583 18 6 3.4644 -0.9519 1.3212 19 7 2.0225 -0.6995 1.1946 20 6 1.1535 -1.1134 2.1686 21 1 0.1386 -1.3774 1.9102 22 6 1.5771 -1.1937 3.4881 23 7 2.5991 -0.4717 3.8963 24 14 0.6965 -2.3262 4.6844 25 1 1.3371 -2.2293 6.0207 26 1 -0.7291 -1.9238 4.7891 27 1 0.7811 -3.7257 4.1948 28 1 -0.3633 0.5083 0.8930 29 1 -0.3633 0.5192 -0.8869 30 1 -0.3633 -1.0277 -0.0064 31 1 1.1377 -2.4934 -0.4985 32 1 -0.4140 -6.3908 -0.5952 33 1 -0.8140 -7.4641 -2.7751 34 1 1.5056 -3.2992 -4.9679 35 1 0.3651 -4.2068 -5.8035 36 1 4.0058 0.1474 -1.0995 37 1 3.9313 -1.3420 -2.0711 38 1 5.0363 -1.7762 0.0968 39 1 3.4909 -2.6545 -0.0018 40 1 3.9928 -0.0049 1.4311 41 1 3.6505 -1.5777 2.1941 42 1 3.0045 0.1763 3.2991 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993168116.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:57 Heat of formation + Delta-G solvation = 18.400202 kcal Electronic energy + Delta-G solvation = -26211.717389 eV Core-core repulsion = 22612.574110 eV Total energy + Delta-G solvation = -3599.143279 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.27739 -40.91091 -39.24168 -36.64227 -35.71428 -34.71489 -34.06559 -33.39791 -31.32128 -30.39966 -28.00795 -26.84238 -26.41604 -24.63937 -23.71427 -22.64685 -22.22244 -20.35921 -19.47490 -18.99028 -18.71544 -18.49828 -17.23325 -16.92119 -16.43403 -16.15592 -16.08434 -15.85374 -15.51647 -15.39122 -15.18640 -14.71702 -14.68941 -14.32055 -14.23245 -13.48738 -13.22740 -12.81075 -12.75048 -12.73439 -12.63476 -12.49571 -12.28254 -11.90862 -11.84274 -11.73530 -11.58094 -11.50676 -11.29350 -10.96054 -10.40233 -10.14479 -10.04261 -9.10901 -8.83182 -8.11088 -5.30827 -0.47735 0.24050 1.63260 1.70117 1.71544 1.87639 2.07043 2.49431 2.70965 2.83480 3.15908 3.31052 3.40762 3.47994 3.61602 3.90879 3.96530 4.08668 4.15892 4.24278 4.28195 4.45819 4.47102 4.55898 4.60908 4.84008 4.86687 4.88573 5.01546 5.08228 5.22876 5.30048 5.31675 5.37505 5.39677 5.56173 5.98637 5.99888 6.30434 6.46608 6.50496 6.62964 6.99552 7.12821 7.18161 7.86803 8.31366 9.13110 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.015343 B = 0.005188 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.463397 B = 5395.500761 C = 6497.831479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.157 3.843 3 H 0.036 0.964 4 C 0.139 3.861 5 H 0.089 0.911 6 N -0.678 5.678 7 C 0.577 3.423 8 O -0.570 6.570 9 C -0.073 4.073 10 N -0.399 5.399 11 C -0.016 4.016 12 C 0.146 3.854 13 N -0.516 5.516 14 C 0.397 3.603 15 N -0.818 5.818 16 C -0.114 4.114 17 C -0.123 4.123 18 C 0.159 3.841 19 N -0.603 5.603 20 C -0.335 4.335 21 H 0.061 0.939 22 C -0.075 4.075 23 N -0.949 5.949 24 Si 1.107 2.893 25 H -0.300 1.300 26 H -0.278 1.278 27 H -0.279 1.279 28 H 0.045 0.955 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.413 0.587 32 H 0.203 0.797 33 H 0.222 0.778 34 H 0.423 0.577 35 H 0.410 0.590 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.047 0.953 40 H 0.006 0.994 41 H 0.044 0.956 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.030 -10.058 -15.009 18.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.051 3.949 3 H 0.054 0.946 4 C 0.033 3.967 5 H 0.107 0.893 6 N -0.327 5.327 7 C 0.364 3.636 8 O -0.451 6.451 9 C -0.219 4.219 10 N -0.116 5.116 11 C -0.183 4.183 12 C -0.020 4.020 13 N -0.240 5.240 14 C 0.155 3.845 15 N -0.370 5.370 16 C -0.152 4.152 17 C -0.162 4.162 18 C 0.033 3.967 19 N -0.328 5.328 20 C -0.465 4.465 21 H 0.079 0.921 22 C -0.271 4.271 23 N -0.592 5.592 24 Si 0.933 3.067 25 H -0.226 1.226 26 H -0.205 1.205 27 H -0.205 1.205 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.250 0.750 32 H 0.220 0.780 33 H 0.239 0.761 34 H 0.264 0.736 35 H 0.241 0.759 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.024 0.976 41 H 0.062 0.938 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.681 -10.077 -14.181 18.015 hybrid contribution 0.188 0.860 -1.094 1.405 sum -4.493 -9.217 -15.275 18.397 Atomic orbital electron populations 1.21658 0.94496 1.01299 1.00682 1.20773 0.94440 0.93522 0.86187 0.94606 1.21389 0.93101 0.83252 0.98956 0.89307 1.45792 1.59682 1.18026 1.09188 1.17776 0.77988 0.84147 0.83694 1.90433 1.53168 1.67010 1.34487 1.21311 1.12628 0.97632 0.90310 1.68141 1.04591 1.09461 1.29390 1.24142 1.00818 0.92035 1.01293 1.24626 0.89602 1.00882 0.86864 1.68357 1.17108 1.05738 1.32770 1.19171 0.89285 0.88494 0.87562 1.42765 1.44326 1.42863 1.07003 1.21725 0.95181 1.00765 0.97552 1.21859 0.99914 0.98835 0.95566 1.20788 0.84164 0.95850 0.95869 1.44345 1.02623 1.65818 1.20000 1.20116 0.96382 1.41498 0.88489 0.92140 1.26967 1.00523 1.01795 0.97829 1.70889 1.27510 1.22817 1.37969 0.82943 0.74692 0.75161 0.73875 1.22614 1.20450 1.20521 0.93631 0.91647 0.93251 0.74966 0.77985 0.76124 0.73592 0.75881 0.90744 0.91979 0.91484 0.93431 0.97644 0.93776 0.93601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.57 7.72 71.98 0.56 -4.01 16 2 C 0.16 6.17 3.18 44.83 0.14 6.31 16 3 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 4 C 0.14 4.82 2.32 44.93 0.10 4.92 16 5 H 0.09 2.94 7.58 -2.39 -0.02 2.92 16 6 N -0.68 -23.62 3.43 -445.84 -1.53 -25.15 16 7 C 0.58 19.27 7.76 86.75 0.67 19.94 16 8 O -0.57 -19.31 13.42 -3.92 -0.05 -19.36 16 9 C -0.07 -2.21 6.77 42.01 0.28 -1.93 16 10 N -0.40 -11.54 9.71 -183.94 -1.79 -13.33 16 11 C -0.02 -0.32 11.21 84.85 0.95 0.63 16 12 C 0.15 2.37 11.22 84.80 0.95 3.33 16 13 N -0.52 -11.53 10.52 -191.86 -2.02 -13.55 16 14 C 0.40 10.44 7.77 133.50 1.04 11.48 16 15 N -0.82 -18.53 8.64 -54.83 -0.47 -19.00 16 16 C -0.11 -3.81 5.58 30.62 0.17 -3.64 16 17 C -0.12 -4.60 5.93 30.67 0.18 -4.42 16 18 C 0.16 7.29 4.69 86.36 0.41 7.69 16 19 N -0.60 -28.11 2.49 -676.00 -1.69 -29.80 16 20 C -0.34 -17.39 8.48 84.03 0.71 -16.68 16 21 H 0.06 3.11 6.29 -2.91 -0.02 3.09 16 22 C -0.07 -4.10 4.71 84.86 0.40 -3.70 16 23 N -0.95 -56.54 12.47 21.65 0.27 -56.27 16 24 Si 1.11 49.80 29.98 68.60 2.06 51.86 16 25 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 26 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 27 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 28 H 0.04 1.83 7.62 -2.39 -0.02 1.81 16 29 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 30 H 0.05 1.87 6.36 -2.39 -0.02 1.86 16 31 H 0.41 15.88 7.10 -92.70 -0.66 15.22 16 32 H 0.20 2.60 8.06 -2.91 -0.02 2.58 16 33 H 0.22 1.29 8.06 -2.91 -0.02 1.26 16 34 H 0.42 10.47 5.87 -92.71 -0.54 9.93 16 35 H 0.41 7.11 8.95 -92.71 -0.83 6.28 16 36 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 38 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.05 1.89 7.53 -2.38 -0.02 1.87 16 40 H 0.01 0.26 7.84 -2.39 -0.02 0.25 16 41 H 0.04 2.32 6.41 -2.38 -0.02 2.30 16 42 H 0.25 15.41 6.67 -92.71 -0.62 14.80 16 Total: -1.00 -66.45 334.37 0.55 -65.89 By element: Atomic # 1 Polarization: 39.57 SS G_CDS: -0.80 Total: 38.78 kcal Atomic # 6 Polarization: 13.37 SS G_CDS: 6.57 Total: 19.94 kcal Atomic # 7 Polarization: -149.88 SS G_CDS: -7.23 Total: -157.11 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.05 Total: -19.36 kcal Atomic # 14 Polarization: 49.80 SS G_CDS: 2.06 Total: 51.86 kcal Total: -66.45 0.55 -65.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993168116.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.293 kcal (2) G-P(sol) polarization free energy of solvation -66.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds