Wall clock time and date at job start Tue Mar 31 2020 09:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.70006 * 2 1 4 4 C 1.53187 * 109.58689 * 120.35517 * 2 1 3 5 5 H 1.08997 * 109.52349 * 54.45824 * 4 2 1 6 6 N 1.46494 * 109.50015 * 294.37263 * 4 2 1 7 7 C 1.34783 * 120.00050 * 155.15939 * 6 4 2 8 8 O 1.21559 * 119.99873 * 0.02562 * 7 6 4 9 9 C 1.47729 * 119.99770 * 180.02562 * 7 6 4 10 10 N 1.33012 * 120.16636 * 5.52798 * 9 7 6 11 11 C 1.31729 * 120.01283 * 180.02562 * 10 9 7 12 12 C 1.38806 * 120.33843 * 0.02562 * 11 10 9 13 13 N 1.32025 * 120.33008 * 359.74937 * 12 11 10 14 14 C 1.32832 * 119.98123 * 0.50140 * 13 12 11 15 15 N 1.38277 * 120.16998 * 179.77240 * 14 13 12 16 16 C 1.53047 * 109.31116 * 174.42369 * 4 2 1 17 17 C 1.53041 * 109.53523 * 298.63512 * 16 4 2 18 18 C 1.53191 * 109.31123 * 61.36756 * 17 16 4 19 19 N 1.46922 * 109.58516 * 239.64780 * 2 1 3 20 20 C 1.36933 * 120.63446 * 6.60240 * 19 2 1 21 21 H 1.08000 * 120.00043 * 329.77578 * 20 19 2 22 22 C 1.38813 * 120.00507 * 149.77410 * 20 19 2 23 23 N 1.31626 * 119.99860 * 348.62665 * 22 20 19 24 24 Si 1.86794 * 120.00347 * 168.62363 * 22 20 19 25 25 H 1.48505 * 109.47185 * 0.02562 * 24 22 20 26 26 H 1.48493 * 109.47382 * 120.00360 * 24 22 20 27 27 H 1.48507 * 109.46909 * 240.00289 * 24 22 20 28 28 H 1.09005 * 109.46976 * 299.64457 * 1 2 3 29 29 H 1.09004 * 109.47291 * 59.64377 * 1 2 3 30 30 H 1.09003 * 109.46769 * 179.64317 * 1 2 3 31 31 H 0.96998 * 120.00098 * 335.16500 * 6 4 2 32 32 H 1.08001 * 119.83403 * 180.02562 * 11 10 9 33 33 H 1.08002 * 119.83592 * 179.97438 * 12 11 10 34 34 H 0.96999 * 120.00057 * 202.44958 * 15 14 13 35 35 H 0.96993 * 119.99624 * 22.44751 * 15 14 13 36 36 H 1.09003 * 109.45772 * 58.65757 * 16 4 2 37 37 H 1.08998 * 109.45889 * 178.61611 * 16 4 2 38 38 H 1.09002 * 109.49605 * 181.31389 * 17 16 4 39 39 H 1.08998 * 109.49692 * 301.41424 * 17 16 4 40 40 H 1.08997 * 109.58850 * 65.15008 * 18 17 16 41 41 H 1.09009 * 109.58606 * 185.57377 * 18 17 16 42 42 H 0.96990 * 120.00046 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7293 1.2454 5 1 1.6031 -1.7253 1.2918 6 7 1.6706 0.0267 2.4434 7 6 1.5504 -0.6044 3.6283 8 8 1.7520 -1.8008 3.7029 9 6 1.1738 0.1580 4.8363 10 7 0.8457 1.4434 4.7402 11 6 0.5108 2.1205 5.8194 12 6 0.4984 1.4996 7.0608 13 7 0.8173 0.2232 7.1712 14 6 1.1619 -0.4705 6.0921 15 7 1.5012 -1.8064 6.2038 16 6 3.5676 -0.8479 1.1701 17 6 3.9569 -1.6656 -0.0636 18 6 3.4650 -0.9468 -1.3238 19 7 2.0225 -0.6995 -1.1945 20 6 1.1537 -1.1130 -2.1688 21 1 0.1416 -1.3862 -1.9092 22 6 1.5737 -1.1810 -3.4901 23 7 2.7214 -0.6426 -3.8444 24 14 0.5105 -2.0368 -4.7653 25 1 -0.7210 -2.5542 -4.1164 26 1 0.1397 -1.0703 -5.8299 27 1 1.2672 -3.1660 -5.3635 28 1 -0.3633 0.5083 0.8932 29 1 -0.3634 0.5194 -0.8868 30 1 -0.3633 -1.0277 -0.0064 31 1 1.5101 0.9814 2.3840 32 1 0.2446 3.1640 5.7380 33 1 0.2229 2.0626 7.9404 34 1 2.0493 -2.2262 5.5224 35 1 1.1912 -2.3235 6.9635 36 1 4.0061 0.1475 1.0993 37 1 3.9379 -1.3447 2.0668 38 1 5.0412 -1.7694 -0.1038 39 1 3.4983 -2.6527 -0.0053 40 1 3.9903 0.0022 -1.4317 41 1 3.6518 -1.5716 -2.1973 42 1 3.0151 -0.6904 -4.7675 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993168135.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:08:02 Heat of formation + Delta-G solvation = 16.973404 kcal Electronic energy + Delta-G solvation = -25467.405680 eV Core-core repulsion = 21868.200530 eV Total energy + Delta-G solvation = -3599.205150 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.25211 -40.73793 -39.17635 -36.68551 -35.70316 -34.71980 -34.17622 -33.39686 -31.34731 -30.35902 -27.95561 -26.95412 -26.36348 -24.64251 -23.80698 -22.34589 -21.84492 -21.13159 -19.43805 -18.80946 -18.49244 -18.25238 -17.39401 -16.95428 -16.60548 -16.23629 -15.99720 -15.58248 -15.54914 -15.38348 -15.07201 -14.85423 -14.47225 -14.35822 -14.22047 -13.35416 -13.24868 -12.83958 -12.73975 -12.71096 -12.62997 -12.51489 -12.38066 -11.98931 -11.85078 -11.77043 -11.64600 -11.56472 -11.29697 -11.12441 -10.52638 -10.15417 -10.06584 -9.09610 -8.62953 -7.83861 -5.32930 -0.45894 0.26912 1.46777 1.49093 1.58543 1.71148 1.98307 2.46305 2.54838 2.84573 3.13974 3.31919 3.42409 3.57680 3.68236 3.88488 4.01936 4.17860 4.22029 4.26845 4.36470 4.50595 4.52941 4.61985 4.75844 4.89655 4.91756 5.03780 5.14207 5.19995 5.27421 5.34769 5.42156 5.47018 5.60294 5.71215 5.79374 5.98010 6.29544 6.41898 6.44715 6.60885 6.98939 7.15789 7.19027 7.86825 8.38770 9.22633 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.027069 B = 0.003389 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.132531 B = 8260.490470 C = 8539.214613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.165 3.835 3 H 0.030 0.970 4 C 0.146 3.854 5 H 0.065 0.935 6 N -0.688 5.688 7 C 0.580 3.420 8 O -0.569 6.569 9 C -0.073 4.073 10 N -0.392 5.392 11 C -0.012 4.012 12 C 0.145 3.855 13 N -0.520 5.520 14 C 0.395 3.605 15 N -0.819 5.819 16 C -0.109 4.109 17 C -0.129 4.129 18 C 0.175 3.825 19 N -0.600 5.600 20 C -0.252 4.252 21 H 0.072 0.928 22 C -0.049 4.049 23 N -0.935 5.935 24 Si 0.963 3.037 25 H -0.268 1.268 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.069 0.931 29 H 0.050 0.950 30 H 0.042 0.958 31 H 0.414 0.586 32 H 0.212 0.788 33 H 0.221 0.779 34 H 0.421 0.579 35 H 0.410 0.590 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.073 0.927 39 H 0.047 0.953 40 H 0.002 0.998 41 H 0.059 0.941 42 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.088 5.513 22.385 23.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.058 3.942 3 H 0.048 0.952 4 C 0.040 3.960 5 H 0.083 0.917 6 N -0.337 5.337 7 C 0.366 3.634 8 O -0.449 6.449 9 C -0.219 4.219 10 N -0.109 5.109 11 C -0.179 4.179 12 C -0.021 4.021 13 N -0.243 5.243 14 C 0.153 3.847 15 N -0.368 5.368 16 C -0.147 4.147 17 C -0.168 4.168 18 C 0.049 3.951 19 N -0.324 5.324 20 C -0.382 4.382 21 H 0.090 0.910 22 C -0.244 4.244 23 N -0.581 5.581 24 Si 0.792 3.208 25 H -0.193 1.193 26 H -0.219 1.219 27 H -0.219 1.219 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.251 0.749 32 H 0.228 0.772 33 H 0.238 0.762 34 H 0.261 0.739 35 H 0.241 0.759 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.066 0.934 40 H 0.020 0.980 41 H 0.078 0.922 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.842 4.536 22.132 22.770 hybrid contribution -0.191 -0.388 -1.124 1.204 sum -3.032 4.148 21.008 21.627 Atomic orbital electron populations 1.21715 0.94550 1.01054 1.01096 1.20694 0.94217 0.93422 0.85885 0.95195 1.21398 0.95149 0.95610 0.83853 0.91727 1.45717 1.68053 1.13055 1.06878 1.17825 0.76491 0.86083 0.82967 1.90527 1.53846 1.15312 1.85238 1.21137 1.14465 0.93694 0.92578 1.68073 1.03856 1.04726 1.34199 1.24200 1.02280 1.03246 0.88206 1.24675 0.87814 0.88937 1.00665 1.68339 1.17508 1.09755 1.28706 1.19198 0.88828 0.87878 0.88760 1.42753 1.56883 1.06235 1.30907 1.21690 0.95029 1.00297 0.97723 1.22022 1.00353 0.98789 0.95655 1.20682 0.83011 0.96159 0.95243 1.44268 1.03231 1.65789 1.19101 1.19499 0.95541 1.36632 0.86570 0.91035 1.25813 0.98825 1.00879 0.98878 1.70146 1.23205 1.47965 1.16791 0.85259 0.78645 0.77662 0.79218 1.19257 1.21902 1.21919 0.91248 0.93102 0.93912 0.74899 0.77154 0.76236 0.73879 0.75883 0.91945 0.92245 0.90876 0.93429 0.98023 0.92216 0.94217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.75 7.85 71.98 0.56 -4.19 16 2 C 0.16 6.69 3.03 44.97 0.14 6.82 16 3 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 4 C 0.15 5.29 1.99 45.07 0.09 5.38 16 5 H 0.06 2.67 7.58 -2.39 -0.02 2.66 16 6 N -0.69 -20.84 4.56 -445.16 -2.03 -22.88 16 7 C 0.58 17.81 7.75 86.75 0.67 18.49 16 8 O -0.57 -19.62 13.46 -3.90 -0.05 -19.67 16 9 C -0.07 -1.90 6.77 42.01 0.28 -1.62 16 10 N -0.39 -8.54 9.71 -183.94 -1.79 -10.33 16 11 C -0.01 -0.16 11.21 84.84 0.95 0.79 16 12 C 0.15 1.74 11.22 84.80 0.95 2.69 16 13 N -0.52 -10.06 10.52 -191.85 -2.02 -12.08 16 14 C 0.40 9.35 7.77 133.50 1.04 10.39 16 15 N -0.82 -17.73 8.58 -54.82 -0.47 -18.20 16 16 C -0.11 -3.83 5.46 30.62 0.17 -3.66 16 17 C -0.13 -5.04 6.08 30.67 0.19 -4.85 16 18 C 0.17 8.45 5.27 86.36 0.45 8.91 16 19 N -0.60 -29.74 2.99 -675.24 -2.02 -31.76 16 20 C -0.25 -13.61 8.59 84.03 0.72 -12.89 16 21 H 0.07 3.77 6.22 -2.91 -0.02 3.76 16 22 C -0.05 -2.70 5.04 84.86 0.43 -2.27 16 23 N -0.93 -54.70 11.00 21.65 0.24 -54.46 16 24 Si 0.96 44.93 29.57 68.60 2.03 46.96 16 25 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 26 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 27 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 28 H 0.07 2.16 7.79 -2.38 -0.02 2.14 16 29 H 0.05 2.02 7.67 -2.39 -0.02 2.01 16 30 H 0.04 1.68 7.40 -2.39 -0.02 1.67 16 31 H 0.41 11.32 7.96 -92.71 -0.74 10.58 16 32 H 0.21 1.05 8.06 -2.91 -0.02 1.03 16 33 H 0.22 0.41 8.06 -2.91 -0.02 0.39 16 34 H 0.42 10.26 6.00 -92.71 -0.56 9.70 16 35 H 0.41 6.90 8.95 -92.71 -0.83 6.07 16 36 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 39 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.00 0.08 8.14 -2.39 -0.02 0.07 16 41 H 0.06 3.28 6.03 -2.38 -0.01 3.27 16 42 H 0.25 14.13 8.31 -92.72 -0.77 13.36 16 Total: -1.00 -68.61 338.63 -0.51 -69.12 By element: Atomic # 1 Polarization: 30.35 SS G_CDS: -1.04 Total: 29.31 kcal Atomic # 6 Polarization: 17.34 SS G_CDS: 6.65 Total: 23.99 kcal Atomic # 7 Polarization: -141.61 SS G_CDS: -8.09 Total: -149.70 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.05 Total: -19.67 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -68.61 -0.51 -69.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993168135.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.092 kcal (2) G-P(sol) polarization free energy of solvation -68.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds