Wall clock time and date at job start Tue Mar 31 2020 08:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50698 * 119.99889 * 2 1 4 4 N 1.46504 * 109.47063 * 124.99943 * 3 2 1 5 5 C 1.34820 * 126.59444 * 125.27277 * 4 3 2 6 6 C 1.36588 * 106.84067 * 180.10680 * 5 4 3 7 7 C 1.47519 * 125.77020 * 179.89796 * 6 5 4 8 8 O 1.21589 * 120.00361 * 352.68156 * 7 6 5 9 9 N 1.34782 * 119.99876 * 172.68148 * 7 6 5 10 10 C 1.46925 * 120.63230 * 352.68283 * 9 7 6 11 11 C 1.53188 * 108.77519 * 233.63333 * 10 9 7 12 12 C 1.53040 * 109.31429 * 305.35966 * 11 10 9 13 13 C 1.53046 * 109.53199 * 61.36825 * 12 11 10 14 14 H 1.09000 * 109.49853 * 58.58820 * 13 12 11 15 15 N 1.46503 * 109.51764 * 178.66918 * 13 12 11 16 16 C 1.36946 * 119.99523 * 204.85146 * 15 13 12 17 17 H 1.07991 * 120.00027 * 0.02562 * 16 15 13 18 18 C 1.38814 * 119.99983 * 179.97438 * 16 15 13 19 19 N 1.31623 * 119.99907 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00176 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47112 * 90.00012 * 20 18 16 22 22 H 1.48497 * 109.47152 * 210.00275 * 20 18 16 23 23 H 1.48504 * 109.46954 * 330.00383 * 20 18 16 24 24 C 1.46933 * 120.63088 * 172.70661 * 9 7 6 25 25 N 1.34402 * 108.45825 * 359.63586 * 6 5 4 26 26 N 1.28759 * 109.52596 * 0.22534 * 25 6 5 27 27 H 1.07998 * 120.00091 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.00026 * 180.02562 * 1 2 3 29 29 H 1.07998 * 120.00091 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.47430 * 5.00242 * 3 2 1 31 31 H 1.09000 * 109.47317 * 244.99703 * 3 2 1 32 32 H 1.08003 * 126.57664 * 359.97180 * 5 4 3 33 33 H 1.08999 * 109.58910 * 113.84194 * 10 9 7 34 34 H 1.09004 * 109.70529 * 353.48925 * 10 9 7 35 35 H 1.09003 * 109.49811 * 185.41434 * 11 10 9 36 36 H 1.08994 * 109.53123 * 65.33484 * 11 10 9 37 37 H 1.09003 * 109.46419 * 301.34963 * 12 11 10 38 38 H 1.08998 * 109.46549 * 181.38487 * 12 11 10 39 39 H 0.96997 * 120.00514 * 24.85030 * 15 13 12 40 40 H 0.96996 * 119.99776 * 179.97438 * 19 18 16 41 41 H 1.08996 * 109.58315 * 6.58395 * 24 9 7 42 42 H 1.09001 * 109.58366 * 246.15872 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 4.3222 1.5548 1.0746 6 6 4.7899 1.4871 2.3562 7 6 6.1937 1.6670 2.7723 8 8 7.0687 1.7651 1.9338 9 7 6.5064 1.7227 4.0822 10 6 5.4503 1.7668 5.1027 11 6 5.6945 2.9744 6.0130 12 6 7.1140 2.9019 6.5804 13 6 8.1264 2.9490 5.4336 14 1 7.9881 3.8678 4.8637 15 7 9.4856 2.9116 5.9788 16 6 10.5263 3.4368 5.2600 17 1 10.3449 3.8789 4.2916 18 6 11.8142 3.4019 5.7768 19 7 12.0352 2.8635 6.9573 20 14 13.2336 4.1190 4.7967 21 1 13.4000 5.5532 5.1437 22 1 14.4816 3.3829 5.1221 23 1 12.9474 3.9909 3.3452 24 6 7.9099 1.7411 4.5167 25 7 3.7541 1.2347 3.1745 26 7 2.6728 1.1364 2.4823 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1317 0.0896 31 1 2.6213 1.4026 -0.9313 32 1 4.9050 1.7475 0.1860 33 1 5.4758 0.8519 5.6947 34 1 4.4774 1.8632 4.6209 35 1 4.9747 2.9644 6.8316 36 1 5.5789 3.8933 5.4383 37 1 7.2364 1.9715 7.1349 38 1 7.2820 3.7470 7.2479 39 1 9.6486 2.5148 6.8488 40 1 12.9352 2.8388 7.3182 41 1 8.5608 1.8218 3.6462 42 1 8.1359 0.8240 5.0608 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000405726.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:41:14 Heat of formation + Delta-G solvation = 111.039261 kcal Electronic energy + Delta-G solvation = -24627.752668 eV Core-core repulsion = 21032.626520 eV Total energy + Delta-G solvation = -3595.126148 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.41258 -39.55099 -37.16232 -36.41766 -34.40968 -33.18117 -32.18076 -31.20446 -30.82886 -28.35292 -27.39568 -25.44117 -23.92029 -22.90674 -22.61186 -21.69619 -20.84601 -20.20198 -19.15679 -17.62636 -17.01304 -16.45032 -16.25825 -15.77608 -15.69378 -15.05747 -14.79406 -14.42847 -14.20987 -13.91021 -13.76269 -13.47957 -13.31427 -12.97319 -12.69519 -12.31123 -12.28649 -12.25177 -11.98686 -11.65609 -11.10824 -10.88633 -10.77781 -10.71798 -10.48214 -10.23792 -10.16753 -10.08656 -9.80633 -9.73588 -9.51939 -9.40178 -9.00646 -8.22164 -6.93629 -5.73385 -3.02757 0.94641 1.27890 1.65194 2.09376 3.23297 3.41816 3.48399 3.53519 3.56125 3.94154 4.06431 4.17380 4.43213 4.55094 4.63677 4.80629 4.83414 5.10084 5.17588 5.23694 5.32459 5.43943 5.48066 5.57611 5.76884 5.89292 5.92110 5.93524 6.02963 6.11355 6.19023 6.25726 6.30782 6.37349 6.49195 6.59421 6.87444 6.91956 7.11062 7.67163 7.77185 7.84212 8.39579 8.45534 9.56636 10.11582 10.47143 11.48990 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.028427 B = 0.002871 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.733793 B = 9749.531368 C =10500.770489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.181 4.181 3 C 0.151 3.849 4 N -0.360 5.360 5 C 0.089 3.911 6 C -0.089 4.089 7 C 0.595 3.405 8 O -0.542 6.542 9 N -0.588 5.588 10 C 0.086 3.914 11 C -0.128 4.128 12 C -0.127 4.127 13 C 0.169 3.831 14 H 0.051 0.949 15 N -0.719 5.719 16 C -0.240 4.240 17 H 0.072 0.928 18 C -0.013 4.013 19 N -0.933 5.933 20 Si 0.907 3.093 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.281 1.281 24 C 0.093 3.907 25 N -0.204 5.204 26 N -0.065 5.065 27 H 0.103 0.897 28 H 0.108 0.892 29 H 0.118 0.882 30 H 0.102 0.898 31 H 0.114 0.886 32 H 0.205 0.795 33 H 0.064 0.936 34 H 0.121 0.879 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.385 0.615 40 H 0.255 0.745 41 H 0.091 0.909 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.110 -4.307 -12.896 28.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.200 4.200 3 C 0.031 3.969 4 N -0.146 5.146 5 C -0.067 4.067 6 C -0.228 4.228 7 C 0.380 3.620 8 O -0.419 6.419 9 N -0.320 5.320 10 C -0.038 4.038 11 C -0.167 4.167 12 C -0.165 4.165 13 C 0.058 3.942 14 H 0.069 0.931 15 N -0.359 5.359 16 C -0.371 4.371 17 H 0.090 0.910 18 C -0.208 4.208 19 N -0.581 5.581 20 Si 0.738 3.262 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.206 1.206 24 C -0.032 4.032 25 N -0.078 5.078 26 N -0.045 5.045 27 H 0.121 0.879 28 H 0.126 0.874 29 H 0.136 0.864 30 H 0.120 0.880 31 H 0.132 0.868 32 H 0.222 0.778 33 H 0.083 0.917 34 H 0.138 0.862 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.219 0.781 40 H 0.065 0.935 41 H 0.109 0.891 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -25.627 -4.450 -12.485 28.852 hybrid contribution 1.596 0.320 -0.961 1.890 sum -24.032 -4.130 -13.446 27.846 Atomic orbital electron populations 1.23996 0.95461 1.02842 0.96363 1.22873 0.96373 0.97426 1.03307 1.21103 0.91959 0.98155 0.85693 1.50500 1.06692 1.48343 1.09023 1.23408 0.84470 0.98025 1.00776 1.21636 0.95595 1.15222 0.90358 1.16855 0.84835 0.77324 0.82995 1.90807 1.48080 1.51785 1.51198 1.48064 1.08698 1.70502 1.04711 1.22455 0.92601 0.98251 0.90498 1.21879 0.97572 0.98326 0.98949 1.21842 0.93783 1.02189 0.98689 1.20487 0.85915 0.95217 0.92599 0.93118 1.42392 1.01106 1.71043 1.21372 1.19288 0.86761 1.30818 1.00226 0.91014 1.24749 0.97477 1.01554 0.97067 1.69666 1.20645 1.50159 1.17638 0.86186 0.82201 0.78449 0.79396 1.21744 1.21790 1.20608 1.22831 0.78930 1.00775 1.00623 1.74459 0.96566 1.10821 1.25924 1.82005 1.17599 1.21495 0.83352 0.87885 0.87384 0.86415 0.88014 0.86811 0.77847 0.91746 0.86151 0.91091 0.91968 0.92065 0.91581 0.78071 0.93525 0.89055 0.91835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 14.32 29.01 0.42 -0.17 16 2 C -0.18 -0.90 9.72 -36.03 -0.35 -1.25 16 3 C 0.15 0.70 6.98 -5.19 -0.04 0.66 16 4 N -0.36 -3.23 3.68 -62.24 -0.23 -3.46 16 5 C 0.09 0.91 11.28 -16.83 -0.19 0.72 16 6 C -0.09 -1.24 6.69 -83.55 -0.56 -1.79 16 7 C 0.59 10.22 7.67 -12.48 -0.10 10.13 16 8 O -0.54 -10.82 16.30 5.29 0.09 -10.73 16 9 N -0.59 -10.08 2.97 -174.00 -0.52 -10.60 16 10 C 0.09 1.23 6.08 -3.71 -0.02 1.21 16 11 C -0.13 -1.80 6.08 -26.61 -0.16 -1.97 16 12 C -0.13 -2.15 5.36 -26.69 -0.14 -2.29 16 13 C 0.17 3.51 2.92 -67.81 -0.20 3.32 16 14 H 0.05 1.12 8.08 -51.93 -0.42 0.70 16 15 N -0.72 -18.32 5.13 -53.31 -0.27 -18.60 16 16 C -0.24 -6.81 9.93 -15.05 -0.15 -6.95 16 17 H 0.07 2.02 7.83 -52.49 -0.41 1.61 16 18 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 19 N -0.93 -28.44 13.06 55.49 0.72 -27.72 16 20 Si 0.91 22.93 29.55 -169.99 -5.02 17.91 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 23 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 24 C 0.09 1.85 6.03 -3.71 -0.02 1.82 16 25 N -0.20 -2.79 8.79 32.84 0.29 -2.50 16 26 N -0.07 -0.79 13.64 60.35 0.82 0.03 16 27 H 0.10 0.30 7.84 -52.49 -0.41 -0.12 16 28 H 0.11 0.35 8.06 -52.49 -0.42 -0.07 16 29 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 30 H 0.10 0.34 7.79 -51.93 -0.40 -0.07 16 31 H 0.11 0.21 8.08 -51.93 -0.42 -0.21 16 32 H 0.20 1.47 8.06 -52.48 -0.42 1.05 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.12 1.68 4.13 -77.47 -0.32 1.36 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.39 10.31 7.80 -40.82 -0.32 9.99 16 40 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.09 2.07 7.00 -51.93 -0.36 1.70 16 42 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 LS Contribution 352.88 15.07 5.32 5.32 Total: -1.00 -34.53 352.88 -6.42 -40.95 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -6.01 Total: 6.43 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: -1.61 Total: 2.96 kcal Atomic # 7 Polarization: -63.66 SS G_CDS: 0.82 Total: -62.84 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.09 Total: -10.73 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.53 -6.42 -40.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000405726.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.988 kcal (2) G-P(sol) polarization free energy of solvation -34.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds