Wall clock time and date at job start Tue Mar 31 2020 08:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50698 * 119.99889 * 2 1 4 4 N 1.46504 * 109.47063 * 124.99943 * 3 2 1 5 5 C 1.34820 * 126.59444 * 125.27277 * 4 3 2 6 6 C 1.36588 * 106.84067 * 180.10680 * 5 4 3 7 7 C 1.47519 * 125.77020 * 179.89796 * 6 5 4 8 8 O 1.21589 * 120.00361 * 352.68156 * 7 6 5 9 9 N 1.34782 * 119.99876 * 172.68148 * 7 6 5 10 10 C 1.46925 * 120.63230 * 352.68283 * 9 7 6 11 11 C 1.53188 * 108.77519 * 233.63333 * 10 9 7 12 12 C 1.53040 * 109.31429 * 305.35966 * 11 10 9 13 13 C 1.53046 * 109.53199 * 61.36825 * 12 11 10 14 14 H 1.09000 * 109.49853 * 58.58820 * 13 12 11 15 15 N 1.46503 * 109.51764 * 178.66918 * 13 12 11 16 16 C 1.36946 * 119.99523 * 204.85146 * 15 13 12 17 17 H 1.07991 * 120.00027 * 0.02562 * 16 15 13 18 18 C 1.38814 * 119.99983 * 179.97438 * 16 15 13 19 19 N 1.31623 * 119.99907 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00176 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47112 * 90.00012 * 20 18 16 22 22 H 1.48497 * 109.47152 * 210.00275 * 20 18 16 23 23 H 1.48504 * 109.46954 * 330.00383 * 20 18 16 24 24 C 1.46933 * 120.63088 * 172.70661 * 9 7 6 25 25 N 1.34402 * 108.45825 * 359.63586 * 6 5 4 26 26 N 1.28759 * 109.52596 * 0.22534 * 25 6 5 27 27 H 1.07998 * 120.00091 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.00026 * 180.02562 * 1 2 3 29 29 H 1.07998 * 120.00091 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.47430 * 5.00242 * 3 2 1 31 31 H 1.09000 * 109.47317 * 244.99703 * 3 2 1 32 32 H 1.08003 * 126.57664 * 359.97180 * 5 4 3 33 33 H 1.08999 * 109.58910 * 113.84194 * 10 9 7 34 34 H 1.09004 * 109.70529 * 353.48925 * 10 9 7 35 35 H 1.09003 * 109.49811 * 185.41434 * 11 10 9 36 36 H 1.08994 * 109.53123 * 65.33484 * 11 10 9 37 37 H 1.09003 * 109.46419 * 301.34963 * 12 11 10 38 38 H 1.08998 * 109.46549 * 181.38487 * 12 11 10 39 39 H 0.96997 * 120.00514 * 24.85030 * 15 13 12 40 40 H 0.96996 * 119.99776 * 179.97438 * 19 18 16 41 41 H 1.08996 * 109.58315 * 6.58395 * 24 9 7 42 42 H 1.09001 * 109.58366 * 246.15872 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 4.3222 1.5548 1.0746 6 6 4.7899 1.4871 2.3562 7 6 6.1937 1.6670 2.7723 8 8 7.0687 1.7651 1.9338 9 7 6.5064 1.7227 4.0822 10 6 5.4503 1.7668 5.1027 11 6 5.6945 2.9744 6.0130 12 6 7.1140 2.9019 6.5804 13 6 8.1264 2.9490 5.4336 14 1 7.9881 3.8678 4.8637 15 7 9.4856 2.9116 5.9788 16 6 10.5263 3.4368 5.2600 17 1 10.3449 3.8789 4.2916 18 6 11.8142 3.4019 5.7768 19 7 12.0352 2.8635 6.9573 20 14 13.2336 4.1190 4.7967 21 1 13.4000 5.5532 5.1437 22 1 14.4816 3.3829 5.1221 23 1 12.9474 3.9909 3.3452 24 6 7.9099 1.7411 4.5167 25 7 3.7541 1.2347 3.1745 26 7 2.6728 1.1364 2.4823 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1317 0.0896 31 1 2.6213 1.4026 -0.9313 32 1 4.9050 1.7475 0.1860 33 1 5.4758 0.8519 5.6947 34 1 4.4774 1.8632 4.6209 35 1 4.9747 2.9644 6.8316 36 1 5.5789 3.8933 5.4383 37 1 7.2364 1.9715 7.1349 38 1 7.2820 3.7470 7.2479 39 1 9.6486 2.5148 6.8488 40 1 12.9352 2.8388 7.3182 41 1 8.5608 1.8218 3.6462 42 1 8.1359 0.8240 5.0608 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000405726.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:41:13 Heat of formation + Delta-G solvation = 87.082074 kcal Electronic energy + Delta-G solvation = -24628.791529 eV Core-core repulsion = 21032.626520 eV Total energy + Delta-G solvation = -3596.165010 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.30680 -40.91381 -38.65019 -36.97107 -36.17092 -34.08236 -33.61413 -32.74709 -31.97375 -29.97641 -28.10109 -26.76040 -25.85339 -24.02517 -23.53223 -23.08097 -21.81516 -21.09920 -20.34383 -19.13779 -18.61971 -17.52221 -17.21022 -16.95649 -16.66587 -16.14438 -16.05817 -15.67211 -15.54630 -15.31667 -15.15425 -14.90326 -14.54616 -14.09037 -13.91922 -13.73997 -13.47785 -13.23502 -12.96140 -12.87764 -12.65774 -12.46643 -12.35060 -12.19186 -11.88965 -11.84845 -11.54930 -11.34163 -11.32359 -11.09120 -10.86476 -10.56930 -10.33287 -9.71866 -9.00254 -7.96436 -5.26008 0.13414 0.57692 0.78478 1.46079 1.47643 1.56758 1.59202 1.94931 2.18738 2.55469 3.09503 3.36396 3.38832 3.69608 3.80241 3.82964 3.95597 4.01495 4.10556 4.12614 4.19607 4.38633 4.41268 4.42449 4.54607 4.55884 4.74616 4.79278 4.89908 4.95468 5.05493 5.11936 5.19953 5.38144 5.39487 5.45595 5.48233 5.58636 5.63472 5.68784 6.25764 6.38529 6.83989 7.09980 7.32370 8.04013 8.30237 9.26313 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.028427 B = 0.002871 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.733793 B = 9749.531368 C =10500.770489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.198 4.198 3 C 0.142 3.858 4 N -0.344 5.344 5 C 0.111 3.889 6 C -0.119 4.119 7 C 0.593 3.407 8 O -0.579 6.579 9 N -0.592 5.592 10 C 0.086 3.914 11 C -0.119 4.119 12 C -0.118 4.118 13 C 0.169 3.831 14 H 0.034 0.966 15 N -0.729 5.729 16 C -0.244 4.244 17 H 0.068 0.932 18 C -0.070 4.070 19 N -0.965 5.965 20 Si 0.971 3.029 21 H -0.284 1.284 22 H -0.292 1.292 23 H -0.275 1.275 24 C 0.108 3.892 25 N -0.218 5.218 26 N -0.078 5.078 27 H 0.117 0.883 28 H 0.112 0.888 29 H 0.107 0.893 30 H 0.121 0.879 31 H 0.147 0.853 32 H 0.235 0.765 33 H 0.073 0.927 34 H 0.134 0.866 35 H 0.105 0.895 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.377 0.623 40 H 0.252 0.748 41 H 0.057 0.943 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.551 -4.007 -14.296 31.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.217 4.217 3 C 0.024 3.976 4 N -0.128 5.128 5 C -0.046 4.046 6 C -0.258 4.258 7 C 0.380 3.620 8 O -0.459 6.459 9 N -0.323 5.323 10 C -0.036 4.036 11 C -0.157 4.157 12 C -0.156 4.156 13 C 0.059 3.941 14 H 0.052 0.948 15 N -0.369 5.369 16 C -0.375 4.375 17 H 0.086 0.914 18 C -0.263 4.263 19 N -0.615 5.615 20 Si 0.799 3.201 21 H -0.211 1.211 22 H -0.218 1.218 23 H -0.200 1.200 24 C -0.017 4.017 25 N -0.092 5.092 26 N -0.058 5.058 27 H 0.135 0.865 28 H 0.131 0.869 29 H 0.125 0.875 30 H 0.139 0.861 31 H 0.165 0.835 32 H 0.251 0.749 33 H 0.091 0.909 34 H 0.151 0.849 35 H 0.123 0.877 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.210 0.790 40 H 0.061 0.939 41 H 0.076 0.924 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -28.163 -4.151 -13.907 31.683 hybrid contribution 2.162 0.189 -0.645 2.264 sum -26.001 -3.962 -14.552 30.059 Atomic orbital electron populations 1.24205 0.95269 1.03797 0.94609 1.22859 0.96764 0.97234 1.04869 1.21621 0.92143 0.98600 0.85268 1.50805 1.06836 1.46238 1.08954 1.23797 0.84914 0.95565 1.00365 1.21254 0.94037 1.18477 0.92021 1.17278 0.86121 0.76196 0.82413 1.90774 1.49612 1.53469 1.52032 1.48078 1.07853 1.70659 1.05703 1.22651 0.92155 0.98821 0.90017 1.21854 0.96084 0.98005 0.99780 1.21747 0.94446 1.02336 0.97075 1.20620 0.84891 0.94629 0.93976 0.94823 1.42518 1.02451 1.70961 1.20980 1.19544 0.87833 1.30071 1.00097 0.91445 1.25523 0.99873 1.02661 0.98246 1.69804 1.20866 1.51753 1.19091 0.85187 0.78937 0.77725 0.78217 1.21110 1.21815 1.19989 1.22299 0.80593 1.00004 0.98836 1.74351 0.96698 1.11400 1.26720 1.81915 1.17078 1.21854 0.84917 0.86522 0.86944 0.87467 0.86104 0.83548 0.74916 0.90852 0.84947 0.87654 0.92223 0.91549 0.91870 0.79018 0.93873 0.92400 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 14.32 67.78 0.97 0.22 16 2 C -0.20 -1.48 9.72 25.65 0.25 -1.23 16 3 C 0.14 0.82 6.98 85.63 0.60 1.41 16 4 N -0.34 -5.23 3.68 -350.82 -1.29 -6.52 16 5 C 0.11 2.01 11.28 83.85 0.95 2.96 16 6 C -0.12 -3.16 6.69 40.81 0.27 -2.89 16 7 C 0.59 20.48 7.67 86.69 0.67 21.14 16 8 O -0.58 -23.64 16.30 -4.00 -0.07 -23.70 16 9 N -0.59 -20.41 2.97 -822.68 -2.45 -22.85 16 10 C 0.09 2.36 6.08 86.36 0.52 2.89 16 11 C -0.12 -3.12 6.08 30.67 0.19 -2.93 16 12 C -0.12 -3.94 5.36 30.62 0.16 -3.77 16 13 C 0.17 7.18 2.92 45.07 0.13 7.31 16 14 H 0.03 1.54 8.08 -2.39 -0.02 1.52 16 15 N -0.73 -38.25 5.13 -322.56 -1.65 -39.91 16 16 C -0.24 -14.16 9.93 84.03 0.83 -13.33 16 17 H 0.07 3.90 7.83 -2.92 -0.02 3.87 16 18 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 19 N -0.96 -59.94 13.06 21.65 0.28 -59.66 16 20 Si 0.97 47.84 29.55 68.60 2.03 49.86 16 21 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 22 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 23 H -0.27 -13.13 7.11 99.48 0.71 -12.42 16 24 C 0.11 4.45 6.03 86.36 0.52 4.97 16 25 N -0.22 -5.64 8.79 -50.00 -0.44 -6.08 16 26 N -0.08 -1.73 13.64 37.02 0.50 -1.23 16 27 H 0.12 0.30 7.84 -2.91 -0.02 0.27 16 28 H 0.11 0.49 8.06 -2.91 -0.02 0.47 16 29 H 0.11 1.03 8.06 -2.91 -0.02 1.00 16 30 H 0.12 0.32 7.79 -2.39 -0.02 0.30 16 31 H 0.15 -0.08 8.08 -2.39 -0.02 -0.10 16 32 H 0.23 2.66 8.06 -2.91 -0.02 2.63 16 33 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.13 3.48 4.13 -35.44 -0.15 3.33 16 35 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.38 20.77 7.80 -92.71 -0.72 20.05 16 40 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 41 H 0.06 2.76 7.00 -2.39 -0.02 2.74 16 42 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -76.81 352.88 3.62 -73.18 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 0.17 Total: 23.86 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: 6.53 Total: 13.04 kcal Atomic # 7 Polarization: -131.20 SS G_CDS: -5.04 Total: -136.24 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.07 Total: -23.70 kcal Atomic # 14 Polarization: 47.84 SS G_CDS: 2.03 Total: 49.86 kcal Total: -76.81 3.62 -73.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000405726.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.265 kcal (2) G-P(sol) polarization free energy of solvation -76.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds