Wall clock time and date at job start Tue Mar 31 2020 08:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50705 * 119.99343 * 2 1 4 4 N 1.46502 * 109.46833 * 125.00566 * 3 2 1 5 5 C 1.34813 * 126.59073 * 124.99587 * 4 3 2 6 6 C 1.36601 * 106.83588 * 180.02562 * 5 4 3 7 7 C 1.47526 * 125.77083 * 179.97438 * 6 5 4 8 8 O 1.21588 * 119.99760 * 353.19265 * 7 6 5 9 9 N 1.34772 * 119.99851 * 173.19085 * 7 6 5 10 10 C 1.46924 * 120.63434 * 354.10204 * 9 7 6 11 11 C 1.53187 * 108.77615 * 126.41103 * 10 9 7 12 12 C 1.53042 * 109.31382 * 54.63842 * 11 10 9 13 13 C 1.53040 * 109.53614 * 298.63585 * 12 11 10 14 14 H 1.09002 * 109.49637 * 301.37765 * 13 12 11 15 15 N 1.46505 * 109.49743 * 181.31275 * 13 12 11 16 16 C 1.36933 * 119.99870 * 154.99463 * 15 13 12 17 17 H 1.08006 * 120.00212 * 0.02562 * 16 15 13 18 18 C 1.38815 * 119.99942 * 180.02562 * 16 15 13 19 19 N 1.31618 * 120.00047 * 179.72961 * 18 16 15 20 20 Si 1.86795 * 119.99849 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.46780 * 90.00353 * 20 18 16 22 22 H 1.48500 * 109.47058 * 210.00087 * 20 18 16 23 23 H 1.48497 * 109.47462 * 330.00208 * 20 18 16 24 24 C 1.46929 * 120.62829 * 174.12437 * 9 7 6 25 25 N 1.34405 * 108.46132 * 0.24253 * 6 5 4 26 26 N 1.28762 * 109.51816 * 359.58907 * 25 6 5 27 27 H 1.08005 * 119.99511 * 180.02562 * 1 2 3 28 28 H 1.07994 * 120.00356 * 359.97438 * 1 2 3 29 29 H 1.07994 * 120.00356 * 180.02562 * 2 1 3 30 30 H 1.08991 * 109.47309 * 5.00254 * 3 2 1 31 31 H 1.09004 * 109.46944 * 245.00129 * 3 2 1 32 32 H 1.07998 * 126.58344 * 0.02562 * 5 4 3 33 33 H 1.09005 * 109.58509 * 6.62849 * 10 9 7 34 34 H 1.08998 * 109.70711 * 246.27261 * 10 9 7 35 35 H 1.08998 * 109.50106 * 294.68726 * 11 10 9 36 36 H 1.09001 * 109.52550 * 174.60202 * 11 10 9 37 37 H 1.09000 * 109.46584 * 178.61231 * 12 11 10 38 38 H 1.09006 * 109.44873 * 58.64845 * 12 11 10 39 39 H 0.96998 * 119.99721 * 335.00574 * 15 13 12 40 40 H 0.97003 * 120.00496 * 179.97438 * 19 18 16 41 41 H 1.09006 * 109.58193 * 113.80207 * 24 9 7 42 42 H 1.09001 * 109.58667 * 353.37658 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 4.3229 1.5499 1.0738 6 6 4.7901 1.4861 2.3559 7 6 6.1943 1.6644 2.7718 8 8 7.0685 1.7664 1.9330 9 7 6.5079 1.7141 4.0816 10 6 5.4530 1.7221 5.1043 11 6 5.7256 0.5927 6.1026 12 6 7.1429 0.7415 6.6606 13 6 8.1564 0.6322 5.5191 14 1 8.0405 -0.3303 5.0206 15 7 9.5141 0.7433 6.0582 16 6 10.5670 0.1878 5.3816 17 1 10.3967 -0.3320 4.4503 18 6 11.8534 0.2927 5.8928 19 7 12.8648 -0.2459 5.2452 20 14 12.1478 1.1910 7.5038 21 1 12.0450 0.2307 8.6319 22 1 13.5034 1.7973 7.4919 23 1 11.1293 2.2590 7.6685 24 6 7.9113 1.7620 4.5140 25 7 3.7553 1.2277 3.1737 26 7 2.6731 1.1354 2.4821 27 1 -0.5399 -0.9354 0.0004 28 1 -0.5400 0.9352 0.0004 29 1 1.8501 -0.9352 -0.0004 30 1 1.3585 2.1316 0.0896 31 1 2.6212 1.4028 -0.9314 32 1 4.9063 1.7386 0.1848 33 1 4.4838 1.5651 4.6307 34 1 5.4540 2.6792 5.6259 35 1 5.6323 -0.3691 5.5984 36 1 5.0057 0.6467 6.9193 37 1 7.3308 -0.0466 7.3897 38 1 7.2428 1.7138 7.1431 39 1 9.6670 1.2103 6.8945 40 1 13.7637 -0.1723 5.6021 41 1 8.1153 2.7226 4.9871 42 1 8.5642 1.6314 3.6510 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000405729.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:41:17 Heat of formation + Delta-G solvation = 117.355126 kcal Electronic energy + Delta-G solvation = -24718.323629 eV Core-core repulsion = 21123.471357 eV Total energy + Delta-G solvation = -3594.852272 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.44325 -39.59934 -37.25793 -36.43139 -34.55380 -33.19639 -32.20428 -31.29297 -30.96015 -28.78496 -27.48653 -25.50787 -23.81145 -22.93943 -22.60190 -21.56399 -20.85081 -20.29705 -19.25031 -17.67098 -17.48028 -16.48260 -16.23131 -15.80277 -15.72365 -15.15077 -14.70741 -14.52307 -14.17247 -14.12078 -13.85513 -13.70080 -13.10857 -12.98695 -12.72050 -12.45999 -12.39287 -12.27350 -12.04239 -11.81576 -11.25300 -11.01489 -10.84373 -10.73428 -10.58894 -10.27606 -10.23293 -10.07725 -9.80226 -9.66589 -9.52154 -9.42873 -9.03926 -8.28231 -7.24066 -5.73060 -3.09792 0.92954 1.27617 1.61764 2.08218 3.19628 3.39404 3.40787 3.43273 3.48508 3.93215 4.03955 4.16540 4.43059 4.53198 4.62167 4.78556 4.83188 5.05491 5.08665 5.24299 5.26351 5.32417 5.39768 5.51829 5.62112 5.81836 5.89773 5.91806 5.93797 6.05113 6.09996 6.14017 6.22954 6.33481 6.44083 6.50653 6.80583 6.81260 7.01709 7.63128 7.82338 8.03472 8.36976 8.46174 9.23430 9.95230 10.14422 11.45058 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.030171 B = 0.002929 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.812319 B = 9557.849578 C =10033.669656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.181 4.181 3 C 0.151 3.849 4 N -0.359 5.359 5 C 0.090 3.910 6 C -0.088 4.088 7 C 0.596 3.404 8 O -0.539 6.539 9 N -0.589 5.589 10 C 0.070 3.930 11 C -0.123 4.123 12 C -0.131 4.131 13 C 0.173 3.827 14 H 0.060 0.940 15 N -0.743 5.743 16 C -0.245 4.245 17 H 0.092 0.908 18 C 0.006 3.994 19 N -0.932 5.932 20 Si 0.885 3.115 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.277 1.277 24 C 0.093 3.907 25 N -0.205 5.205 26 N -0.064 5.064 27 H 0.108 0.892 28 H 0.103 0.897 29 H 0.119 0.881 30 H 0.102 0.898 31 H 0.114 0.886 32 H 0.206 0.794 33 H 0.136 0.864 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.362 0.638 40 H 0.259 0.741 41 H 0.061 0.939 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.375 4.382 -9.302 29.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.200 4.200 3 C 0.031 3.969 4 N -0.145 5.145 5 C -0.066 4.066 6 C -0.227 4.227 7 C 0.381 3.619 8 O -0.416 6.416 9 N -0.320 5.320 10 C -0.054 4.054 11 C -0.162 4.162 12 C -0.169 4.169 13 C 0.063 3.937 14 H 0.078 0.922 15 N -0.385 5.385 16 C -0.375 4.375 17 H 0.109 0.891 18 C -0.190 4.190 19 N -0.580 5.580 20 Si 0.715 3.285 21 H -0.211 1.211 22 H -0.218 1.218 23 H -0.203 1.203 24 C -0.031 4.031 25 N -0.078 5.078 26 N -0.043 5.043 27 H 0.126 0.874 28 H 0.121 0.879 29 H 0.137 0.863 30 H 0.120 0.880 31 H 0.132 0.868 32 H 0.222 0.778 33 H 0.153 0.847 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.195 0.805 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -27.865 4.020 -8.949 29.542 hybrid contribution 1.114 0.833 0.399 1.448 sum -26.751 4.853 -8.550 28.500 Atomic orbital electron populations 1.23995 0.95457 1.02836 0.96368 1.22885 0.96384 0.97450 1.03293 1.21113 0.91944 0.98171 0.85677 1.50490 1.06669 1.48331 1.08973 1.23413 0.84440 0.97980 1.00739 1.21625 0.95525 1.15164 0.90398 1.16845 0.84847 0.77301 0.82938 1.90820 1.48052 1.51541 1.51143 1.48011 1.08543 1.70766 1.04688 1.22727 0.93779 0.98449 0.90408 1.21787 0.96910 0.99115 0.98413 1.21895 0.94391 1.01884 0.98753 1.20465 0.84664 0.96403 0.92198 0.92235 1.42747 1.02596 1.67178 1.25945 1.19113 0.85298 1.28103 1.05011 0.89055 1.24681 0.95484 1.00491 0.98370 1.69707 0.98973 1.49445 1.39825 0.86546 0.77185 0.79882 0.84899 1.21090 1.21764 1.20284 1.22743 0.79283 1.00382 1.00683 1.74178 0.96650 1.11181 1.25749 1.82008 1.17526 1.21287 0.83456 0.87362 0.87914 0.86345 0.88014 0.86762 0.77774 0.84747 0.92263 0.91606 0.91107 0.91501 0.92278 0.80469 0.93058 0.92028 0.88687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 14.32 29.01 0.42 -0.17 16 2 C -0.18 -0.90 9.72 -36.02 -0.35 -1.25 16 3 C 0.15 0.68 6.98 -5.19 -0.04 0.64 16 4 N -0.36 -3.16 3.68 -62.24 -0.23 -3.39 16 5 C 0.09 0.90 11.28 -16.83 -0.19 0.71 16 6 C -0.09 -1.20 6.74 -83.55 -0.56 -1.77 16 7 C 0.60 10.11 7.68 -12.48 -0.10 10.02 16 8 O -0.54 -10.71 16.31 5.29 0.09 -10.63 16 9 N -0.59 -9.86 2.97 -174.00 -0.52 -10.38 16 10 C 0.07 0.97 6.32 -3.71 -0.02 0.95 16 11 C -0.12 -1.68 6.08 -26.61 -0.16 -1.84 16 12 C -0.13 -2.10 5.35 -26.69 -0.14 -2.24 16 13 C 0.17 3.48 2.92 -67.81 -0.20 3.28 16 14 H 0.06 1.30 8.08 -51.93 -0.42 0.88 16 15 N -0.74 -17.87 4.93 -53.30 -0.26 -18.13 16 16 C -0.25 -7.06 10.41 -15.06 -0.16 -7.21 16 17 H 0.09 2.85 8.06 -52.48 -0.42 2.43 16 18 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 19 N -0.93 -29.76 13.97 55.49 0.78 -28.98 16 20 Si 0.88 22.35 27.74 -169.99 -4.71 17.64 16 21 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 23 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 24 C 0.09 1.81 6.00 -3.71 -0.02 1.79 16 25 N -0.20 -2.74 8.71 32.85 0.29 -2.45 16 26 N -0.06 -0.76 13.63 60.35 0.82 0.07 16 27 H 0.11 0.36 8.06 -52.48 -0.42 -0.06 16 28 H 0.10 0.29 7.84 -52.49 -0.41 -0.13 16 29 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 30 H 0.10 0.31 7.79 -51.93 -0.40 -0.09 16 31 H 0.11 0.20 8.08 -51.93 -0.42 -0.22 16 32 H 0.21 1.44 8.06 -52.49 -0.42 1.02 16 33 H 0.14 1.82 3.66 -121.33 -0.44 1.37 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.36 8.48 5.66 -40.82 -0.23 8.25 16 40 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.09 2.14 7.04 -51.93 -0.37 1.77 16 LS Contribution 349.53 15.07 5.27 5.27 Total: -1.00 -35.67 349.53 -6.20 -41.87 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -6.09 Total: 6.13 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -1.62 Total: 2.98 kcal Atomic # 7 Polarization: -64.14 SS G_CDS: 0.87 Total: -63.26 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.09 Total: -10.63 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.71 Total: 17.64 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.67 -6.20 -41.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000405729.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.223 kcal (2) G-P(sol) polarization free energy of solvation -35.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds