Wall clock time and date at job start Tue Mar 31 2020 08:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50705 * 119.99343 * 2 1 4 4 N 1.46502 * 109.46833 * 125.00566 * 3 2 1 5 5 C 1.34813 * 126.59073 * 124.99587 * 4 3 2 6 6 C 1.36601 * 106.83588 * 180.02562 * 5 4 3 7 7 C 1.47526 * 125.77083 * 179.97438 * 6 5 4 8 8 O 1.21588 * 119.99760 * 353.19265 * 7 6 5 9 9 N 1.34772 * 119.99851 * 173.19085 * 7 6 5 10 10 C 1.46924 * 120.63434 * 354.10204 * 9 7 6 11 11 C 1.53187 * 108.77615 * 126.41103 * 10 9 7 12 12 C 1.53042 * 109.31382 * 54.63842 * 11 10 9 13 13 C 1.53040 * 109.53614 * 298.63585 * 12 11 10 14 14 H 1.09002 * 109.49637 * 301.37765 * 13 12 11 15 15 N 1.46505 * 109.49743 * 181.31275 * 13 12 11 16 16 C 1.36933 * 119.99870 * 154.99463 * 15 13 12 17 17 H 1.08006 * 120.00212 * 0.02562 * 16 15 13 18 18 C 1.38815 * 119.99942 * 180.02562 * 16 15 13 19 19 N 1.31618 * 120.00047 * 179.72961 * 18 16 15 20 20 Si 1.86795 * 119.99849 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.46780 * 90.00353 * 20 18 16 22 22 H 1.48500 * 109.47058 * 210.00087 * 20 18 16 23 23 H 1.48497 * 109.47462 * 330.00208 * 20 18 16 24 24 C 1.46929 * 120.62829 * 174.12437 * 9 7 6 25 25 N 1.34405 * 108.46132 * 0.24253 * 6 5 4 26 26 N 1.28762 * 109.51816 * 359.58907 * 25 6 5 27 27 H 1.08005 * 119.99511 * 180.02562 * 1 2 3 28 28 H 1.07994 * 120.00356 * 359.97438 * 1 2 3 29 29 H 1.07994 * 120.00356 * 180.02562 * 2 1 3 30 30 H 1.08991 * 109.47309 * 5.00254 * 3 2 1 31 31 H 1.09004 * 109.46944 * 245.00129 * 3 2 1 32 32 H 1.07998 * 126.58344 * 0.02562 * 5 4 3 33 33 H 1.09005 * 109.58509 * 6.62849 * 10 9 7 34 34 H 1.08998 * 109.70711 * 246.27261 * 10 9 7 35 35 H 1.08998 * 109.50106 * 294.68726 * 11 10 9 36 36 H 1.09001 * 109.52550 * 174.60202 * 11 10 9 37 37 H 1.09000 * 109.46584 * 178.61231 * 12 11 10 38 38 H 1.09006 * 109.44873 * 58.64845 * 12 11 10 39 39 H 0.96998 * 119.99721 * 335.00574 * 15 13 12 40 40 H 0.97003 * 120.00496 * 179.97438 * 19 18 16 41 41 H 1.09006 * 109.58193 * 113.80207 * 24 9 7 42 42 H 1.09001 * 109.58667 * 353.37658 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 4.3229 1.5499 1.0738 6 6 4.7901 1.4861 2.3559 7 6 6.1943 1.6644 2.7718 8 8 7.0685 1.7664 1.9330 9 7 6.5079 1.7141 4.0816 10 6 5.4530 1.7221 5.1043 11 6 5.7256 0.5927 6.1026 12 6 7.1429 0.7415 6.6606 13 6 8.1564 0.6322 5.5191 14 1 8.0405 -0.3303 5.0206 15 7 9.5141 0.7433 6.0582 16 6 10.5670 0.1878 5.3816 17 1 10.3967 -0.3320 4.4503 18 6 11.8534 0.2927 5.8928 19 7 12.8648 -0.2459 5.2452 20 14 12.1478 1.1910 7.5038 21 1 12.0450 0.2307 8.6319 22 1 13.5034 1.7973 7.4919 23 1 11.1293 2.2590 7.6685 24 6 7.9113 1.7620 4.5140 25 7 3.7553 1.2277 3.1737 26 7 2.6731 1.1354 2.4821 27 1 -0.5399 -0.9354 0.0004 28 1 -0.5400 0.9352 0.0004 29 1 1.8501 -0.9352 -0.0004 30 1 1.3585 2.1316 0.0896 31 1 2.6212 1.4028 -0.9314 32 1 4.9063 1.7386 0.1848 33 1 4.4838 1.5651 4.6307 34 1 5.4540 2.6792 5.6259 35 1 5.6323 -0.3691 5.5984 36 1 5.0057 0.6467 6.9193 37 1 7.3308 -0.0466 7.3897 38 1 7.2428 1.7138 7.1431 39 1 9.6670 1.2103 6.8945 40 1 13.7637 -0.1723 5.6021 41 1 8.1153 2.7226 4.9871 42 1 8.5642 1.6314 3.6510 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000405729.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:41:16 Heat of formation + Delta-G solvation = 91.520162 kcal Electronic energy + Delta-G solvation = -24719.443917 eV Core-core repulsion = 21123.471357 eV Total energy + Delta-G solvation = -3595.972560 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.32765 -40.93328 -38.72552 -36.99251 -36.27539 -34.12518 -33.66870 -32.90570 -32.05656 -30.37676 -28.13185 -26.78171 -25.64377 -24.04328 -23.48254 -23.02239 -21.91745 -21.16289 -20.41462 -19.54012 -18.67614 -17.54416 -17.08715 -16.97120 -16.73846 -16.31308 -16.07438 -15.72938 -15.51161 -15.41077 -15.06727 -14.82283 -14.63353 -14.26729 -13.99579 -13.90116 -13.49536 -13.43900 -12.98979 -12.95196 -12.63276 -12.50511 -12.38858 -12.13809 -11.91189 -11.83146 -11.51308 -11.35710 -11.34314 -11.11499 -10.81107 -10.57120 -10.34516 -9.80291 -9.24790 -8.03234 -5.39270 0.12431 0.55450 0.77706 1.38226 1.43192 1.50171 1.58329 1.94061 2.17984 2.48410 3.07587 3.27347 3.37407 3.54429 3.69826 3.82573 3.94214 3.96841 4.08488 4.12161 4.15916 4.34124 4.36682 4.38744 4.52215 4.55542 4.71273 4.79238 4.86927 4.95375 5.04394 5.13193 5.23711 5.36202 5.38477 5.45307 5.57759 5.62848 5.69071 5.76726 6.20303 6.36913 6.83542 7.04892 7.09853 7.78018 8.00812 9.18436 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.030171 B = 0.002929 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.812319 B = 9557.849578 C =10033.669656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.200 4.200 3 C 0.142 3.858 4 N -0.343 5.343 5 C 0.111 3.889 6 C -0.118 4.118 7 C 0.591 3.409 8 O -0.580 6.580 9 N -0.592 5.592 10 C 0.068 3.932 11 C -0.116 4.116 12 C -0.121 4.121 13 C 0.171 3.829 14 H 0.031 0.969 15 N -0.743 5.743 16 C -0.237 4.237 17 H 0.047 0.953 18 C -0.064 4.064 19 N -0.984 5.984 20 Si 0.962 3.038 21 H -0.275 1.275 22 H -0.296 1.296 23 H -0.247 1.247 24 C 0.106 3.894 25 N -0.217 5.217 26 N -0.076 5.076 27 H 0.112 0.888 28 H 0.118 0.882 29 H 0.106 0.894 30 H 0.123 0.877 31 H 0.147 0.853 32 H 0.234 0.766 33 H 0.145 0.855 34 H 0.076 0.924 35 H 0.054 0.946 36 H 0.107 0.893 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.370 0.630 40 H 0.259 0.741 41 H 0.069 0.931 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.572 5.953 -8.281 32.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.219 4.219 3 C 0.024 3.976 4 N -0.128 5.128 5 C -0.047 4.047 6 C -0.257 4.257 7 C 0.379 3.621 8 O -0.460 6.460 9 N -0.322 5.322 10 C -0.054 4.054 11 C -0.154 4.154 12 C -0.160 4.160 13 C 0.062 3.938 14 H 0.050 0.950 15 N -0.386 5.386 16 C -0.367 4.367 17 H 0.065 0.935 18 C -0.256 4.256 19 N -0.634 5.634 20 Si 0.788 3.212 21 H -0.201 1.201 22 H -0.223 1.223 23 H -0.172 1.172 24 C -0.019 4.019 25 N -0.090 5.090 26 N -0.055 5.055 27 H 0.130 0.870 28 H 0.136 0.864 29 H 0.124 0.876 30 H 0.141 0.859 31 H 0.164 0.836 32 H 0.250 0.750 33 H 0.162 0.838 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.125 0.875 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.205 0.795 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -31.180 5.596 -7.921 32.653 hybrid contribution 1.935 0.266 -0.126 1.957 sum -29.245 5.862 -8.046 30.893 Atomic orbital electron populations 1.24205 0.95224 1.03820 0.94527 1.22867 0.96808 0.97250 1.04947 1.21628 0.92136 0.98586 0.85242 1.50790 1.06779 1.46274 1.08916 1.23794 0.84915 0.95602 1.00344 1.21250 0.93992 1.18395 0.92060 1.17300 0.86104 0.76227 0.82505 1.90786 1.49672 1.53416 1.52123 1.48056 1.07843 1.70726 1.05619 1.22969 0.93121 0.99456 0.89865 1.21775 0.96013 0.98397 0.99243 1.21819 0.94240 1.02991 0.96905 1.20604 0.84072 0.95214 0.93959 0.95042 1.42656 1.02974 1.67018 1.25966 1.18972 0.86976 1.27173 1.03622 0.93507 1.25597 0.94965 1.02067 1.02949 1.69909 0.99507 1.51687 1.42316 0.85310 0.77308 0.79137 0.79401 1.20065 1.22262 1.17171 1.22267 0.80716 1.00228 0.98709 1.74059 0.96728 1.11706 1.26476 1.81914 1.17009 1.21609 0.84986 0.87011 0.86387 0.87631 0.85907 0.83582 0.74959 0.83815 0.90543 0.92720 0.87455 0.91146 0.90545 0.79546 0.93240 0.91242 0.92939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 14.32 67.78 0.97 0.20 16 2 C -0.20 -1.56 9.72 25.65 0.25 -1.32 16 3 C 0.14 0.82 6.98 85.63 0.60 1.42 16 4 N -0.34 -5.20 3.68 -350.82 -1.29 -6.49 16 5 C 0.11 2.02 11.28 83.85 0.95 2.97 16 6 C -0.12 -3.14 6.74 40.82 0.28 -2.86 16 7 C 0.59 20.51 7.68 86.69 0.67 21.18 16 8 O -0.58 -24.13 16.31 -3.99 -0.07 -24.19 16 9 N -0.59 -19.95 2.97 -822.68 -2.45 -22.39 16 10 C 0.07 1.77 6.32 86.36 0.55 2.32 16 11 C -0.12 -2.87 6.08 30.67 0.19 -2.68 16 12 C -0.12 -3.65 5.35 30.62 0.16 -3.48 16 13 C 0.17 6.97 2.92 45.07 0.13 7.10 16 14 H 0.03 1.45 8.08 -2.39 -0.02 1.43 16 15 N -0.74 -35.98 4.93 -322.56 -1.59 -37.57 16 16 C -0.24 -14.15 10.41 84.03 0.88 -13.27 16 17 H 0.05 3.15 8.06 -2.91 -0.02 3.12 16 18 C -0.06 -3.92 5.50 84.86 0.47 -3.46 16 19 N -0.98 -65.22 13.97 21.65 0.30 -64.91 16 20 Si 0.96 46.28 27.74 68.60 1.90 48.18 16 21 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 22 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 23 H -0.25 -10.60 6.52 99.48 0.65 -9.95 16 24 C 0.11 4.24 6.00 86.36 0.52 4.76 16 25 N -0.22 -5.52 8.71 -49.99 -0.44 -5.95 16 26 N -0.08 -1.66 13.63 37.02 0.50 -1.15 16 27 H 0.11 0.52 8.06 -2.91 -0.02 0.50 16 28 H 0.12 0.28 7.84 -2.91 -0.02 0.26 16 29 H 0.11 1.09 8.06 -2.91 -0.02 1.07 16 30 H 0.12 0.27 7.79 -2.39 -0.02 0.26 16 31 H 0.15 -0.05 8.08 -2.39 -0.02 -0.07 16 32 H 0.23 2.73 8.06 -2.91 -0.02 2.71 16 33 H 0.15 3.64 3.66 -92.19 -0.34 3.30 16 34 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 39 H 0.37 16.70 5.66 -92.71 -0.52 16.18 16 40 H 0.26 16.23 8.31 -92.71 -0.77 15.46 16 41 H 0.07 2.63 8.14 -2.38 -0.02 2.61 16 42 H 0.05 2.53 7.04 -2.39 -0.02 2.51 16 Total: -1.00 -82.32 349.53 3.60 -78.72 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 0.12 Total: 22.90 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: 6.59 Total: 12.86 kcal Atomic # 7 Polarization: -133.52 SS G_CDS: -4.95 Total: -138.47 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.07 Total: -24.19 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 1.90 Total: 48.18 kcal Total: -82.32 3.60 -78.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000405729.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.241 kcal (2) G-P(sol) polarization free energy of solvation -82.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds