Wall clock time and date at job start Tue Mar 31 2020 09:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47055 * 2 1 4 4 N 1.28716 * 126.03920 * 269.80994 * 3 2 1 5 5 N 1.28513 * 110.63735 * 180.30099 * 4 3 2 6 6 C 1.33316 * 109.44155 * 359.71271 * 5 4 3 7 7 C 1.37009 * 106.37076 * 359.97438 * 6 5 4 8 8 C 1.47234 * 127.18870 * 180.02562 * 7 6 5 9 9 O 1.21611 * 120.00248 * 175.47467 * 8 7 6 10 10 N 1.34783 * 119.99971 * 355.46890 * 8 7 6 11 11 C 1.46494 * 120.00187 * 184.43849 * 10 8 7 12 12 C 1.50694 * 109.47270 * 180.02562 * 11 10 8 13 13 C 1.29460 * 117.69632 * 94.99917 * 12 11 10 14 14 C 1.50322 * 123.65292 * 180.57520 * 13 12 11 15 15 N 1.47006 * 109.16423 * 349.28589 * 14 13 12 16 16 C 1.36943 * 121.37228 * 222.96775 * 15 14 13 17 17 H 1.07999 * 119.99861 * 158.69954 * 16 15 14 18 18 C 1.38815 * 119.99712 * 338.70403 * 16 15 14 19 19 N 1.31613 * 120.00034 * 346.70600 * 18 16 15 20 20 Si 1.86802 * 119.99791 * 166.70865 * 18 16 15 21 21 H 1.48503 * 109.46966 * 59.99815 * 20 18 16 22 22 H 1.48502 * 109.47021 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47214 * 299.99809 * 20 18 16 24 24 C 1.47340 * 117.25425 * 42.94561 * 15 14 13 25 25 C 1.49962 * 117.69103 * 275.22034 * 12 11 10 26 26 H 1.09004 * 109.47516 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47146 * 299.99783 * 1 2 3 28 28 H 1.08999 * 109.47031 * 60.00170 * 1 2 3 29 29 H 1.08998 * 109.47068 * 239.99673 * 2 1 3 30 30 H 1.08997 * 109.47195 * 120.00338 * 2 1 3 31 31 H 1.07998 * 126.81413 * 179.97438 * 6 5 4 32 32 H 0.97001 * 119.99603 * 4.43660 * 10 8 7 33 33 H 1.08998 * 109.47218 * 59.99616 * 11 10 8 34 34 H 1.09002 * 109.46966 * 300.00135 * 11 10 8 35 35 H 1.07998 * 118.16891 * 0.85603 * 13 12 11 36 36 H 1.08999 * 109.51768 * 109.18851 * 14 13 12 37 37 H 1.08991 * 109.52310 * 229.37210 * 14 13 12 38 38 H 0.97006 * 119.99782 * 180.02562 * 19 18 16 39 39 H 1.08999 * 109.77616 * 57.81090 * 24 15 14 40 40 H 1.08995 * 109.77685 * 178.62250 * 24 15 14 41 41 H 1.08998 * 109.43910 * 40.82040 * 25 12 11 42 42 H 1.09006 * 109.13120 * 281.42678 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2740 2.0940 -1.0408 5 7 2.6918 3.2604 -0.6995 6 6 2.7173 3.3510 0.6304 7 6 2.2797 2.1438 1.1081 8 6 2.1284 1.7466 2.5178 9 8 1.6487 0.6644 2.7965 10 7 2.5216 2.5823 3.4994 11 6 2.4617 2.1495 4.8977 12 6 2.9528 3.2608 5.7890 13 6 2.0688 4.0533 6.3053 14 6 2.4099 5.2109 7.2014 15 7 3.8269 5.1245 7.5832 16 6 4.2347 5.3625 8.8687 17 1 5.1811 4.9747 9.2154 18 6 3.4315 6.1021 9.7259 19 7 2.4177 6.7913 9.2470 20 14 3.7897 6.1192 11.5592 21 1 5.1541 6.6575 11.7919 22 1 2.7946 6.9782 12.2499 23 1 3.7056 4.7360 12.0929 24 6 4.7902 4.7707 6.5259 25 6 4.4315 3.3740 6.0114 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8899 31 1 3.0223 4.2063 1.2150 32 1 2.8443 3.4703 3.2799 33 1 3.0909 1.2697 5.0330 34 1 1.4323 1.9033 5.1580 35 1 1.0279 3.8697 6.0832 36 1 2.2319 6.1466 6.6714 37 1 1.7886 5.1743 8.0962 38 1 1.8567 7.3085 9.8460 39 1 4.7249 5.4919 5.7112 40 1 5.8006 4.7651 6.9345 41 1 4.9546 3.1902 5.0730 42 1 4.7405 2.6293 6.7450 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000654976.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:32:44 Heat of formation + Delta-G solvation = 101.840700 kcal Electronic energy + Delta-G solvation = -24538.829214 eV Core-core repulsion = 20943.304186 eV Total energy + Delta-G solvation = -3595.525028 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.55283 -39.74924 -37.85778 -35.90822 -35.00943 -33.16555 -31.78248 -31.10668 -30.78563 -29.74987 -27.21213 -25.20434 -24.42810 -23.60624 -22.82435 -22.15078 -21.12507 -20.65010 -18.54528 -17.69223 -17.13708 -16.71213 -16.13360 -15.76785 -15.37047 -15.15777 -14.93155 -14.59359 -14.26210 -13.93974 -13.69652 -13.51245 -13.31863 -13.07759 -12.63460 -12.35081 -12.31166 -12.13687 -11.94744 -11.65268 -11.45121 -11.26746 -10.93836 -10.79099 -10.55156 -10.48746 -10.39448 -10.29586 -9.89282 -9.78533 -9.68349 -9.20590 -8.78238 -8.13911 -6.84580 -5.84181 -3.22993 0.68112 1.77988 2.06201 2.46824 2.85871 3.24101 3.35556 3.41351 3.42164 4.04390 4.22165 4.43198 4.44317 4.47835 4.69565 4.79826 4.99896 5.07036 5.16969 5.23766 5.33773 5.46174 5.50744 5.65240 5.68160 5.68976 5.79927 5.97430 6.06815 6.12529 6.19251 6.25377 6.42562 6.64875 6.78780 7.07766 7.19733 7.21017 7.30798 7.65334 7.76737 7.83115 8.09780 8.31700 9.14089 9.76370 10.32058 11.25427 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.032543 B = 0.002662 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.200436 B =10516.318433 C =10791.526008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.106 3.894 3 N -0.253 5.253 4 N -0.062 5.062 5 N -0.274 5.274 6 C 0.002 3.998 7 C -0.068 4.068 8 C 0.591 3.409 9 O -0.540 6.540 10 N -0.700 5.700 11 C 0.160 3.840 12 C -0.173 4.173 13 C -0.117 4.117 14 C 0.189 3.811 15 N -0.596 5.596 16 C -0.244 4.244 17 H 0.070 0.930 18 C -0.004 4.004 19 N -0.914 5.914 20 Si 0.908 3.092 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.284 1.284 24 C 0.144 3.856 25 C -0.090 4.090 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.106 0.894 30 H 0.120 0.880 31 H 0.199 0.801 32 H 0.406 0.594 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.041 0.959 37 H 0.105 0.895 38 H 0.255 0.745 39 H 0.024 0.976 40 H 0.057 0.943 41 H 0.053 0.947 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.027 -11.425 -15.942 19.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.014 4.014 3 N -0.051 5.051 4 N -0.042 5.042 5 N -0.136 5.136 6 C -0.159 4.159 7 C -0.202 4.202 8 C 0.375 3.625 9 O -0.417 6.417 10 N -0.351 5.351 11 C 0.038 3.962 12 C -0.174 4.174 13 C -0.138 4.138 14 C 0.064 3.936 15 N -0.320 5.320 16 C -0.373 4.373 17 H 0.088 0.912 18 C -0.201 4.201 19 N -0.560 5.560 20 Si 0.738 3.262 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.211 1.211 24 C 0.017 3.983 25 C -0.129 4.129 26 H 0.105 0.895 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.125 0.875 30 H 0.138 0.862 31 H 0.216 0.784 32 H 0.241 0.759 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.113 0.887 36 H 0.059 0.941 37 H 0.122 0.878 38 H 0.065 0.935 39 H 0.042 0.958 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.444 -12.102 -17.140 21.124 hybrid contribution 0.152 0.335 1.973 2.007 sum -2.292 -11.767 -15.167 19.333 Atomic orbital electron populations 1.22091 0.92552 1.04116 1.03475 1.22373 0.96922 0.75634 1.06445 1.47898 1.40271 1.13541 1.03348 1.78257 1.15146 0.99100 1.11720 1.74911 1.16108 1.10052 1.12555 1.23960 1.02303 0.97588 0.92008 1.22035 1.12846 0.94306 0.91046 1.16723 0.78628 0.84598 0.82564 1.90794 1.44891 1.22376 1.83688 1.45930 1.64884 1.17768 1.06499 1.20562 1.01309 0.96684 0.77612 1.20444 0.96388 0.98429 1.02107 1.23374 0.97660 0.96727 0.96038 1.19915 0.86405 0.90663 0.96624 1.44154 1.01137 1.81277 1.05397 1.19190 1.04881 1.26690 0.86542 0.91215 1.24949 0.99066 0.97305 0.98785 1.69954 1.20181 1.32127 1.33691 0.86277 0.77446 0.77472 0.85042 1.20951 1.21590 1.21091 1.20947 0.93783 0.92091 0.91485 1.20759 0.91863 1.00735 0.99588 0.89496 0.91150 0.91648 0.87539 0.86212 0.78388 0.75900 0.91135 0.91099 0.88704 0.94124 0.87766 0.93489 0.95814 0.92419 0.92822 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 10.24 37.16 0.38 -0.80 16 2 C 0.11 0.85 6.55 -4.04 -0.03 0.83 16 3 N -0.25 -2.79 3.39 -57.38 -0.19 -2.99 16 4 N -0.06 -0.78 13.14 60.35 0.79 0.02 16 5 N -0.27 -3.55 12.35 30.47 0.38 -3.17 16 6 C 0.00 0.02 11.54 -17.35 -0.20 -0.18 16 7 C -0.07 -0.77 6.98 -82.33 -0.57 -1.34 16 8 C 0.59 7.11 7.80 -12.60 -0.10 7.01 16 9 O -0.54 -7.60 14.94 5.27 0.08 -7.53 16 10 N -0.70 -7.85 5.54 -62.63 -0.35 -8.19 16 11 C 0.16 2.08 5.66 -5.20 -0.03 2.05 16 12 C -0.17 -2.67 5.23 -101.00 -0.53 -3.19 16 13 C -0.12 -2.05 9.47 -35.78 -0.34 -2.39 16 14 C 0.19 4.22 5.27 -5.10 -0.03 4.20 16 15 N -0.60 -14.16 3.02 -173.68 -0.52 -14.68 16 16 C -0.24 -6.43 9.75 -15.06 -0.15 -6.58 16 17 H 0.07 1.80 7.86 -52.49 -0.41 1.38 16 18 C 0.00 -0.10 5.09 -17.43 -0.09 -0.19 16 19 N -0.91 -25.43 10.74 55.49 0.60 -24.83 16 20 Si 0.91 21.18 29.57 -169.99 -5.03 16.15 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 C 0.14 2.76 6.58 -3.53 -0.02 2.73 16 25 C -0.09 -1.43 5.94 -28.18 -0.17 -1.60 16 26 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.12 1.01 6.59 -51.93 -0.34 0.67 16 31 H 0.20 1.45 7.55 -52.49 -0.40 1.05 16 32 H 0.41 3.88 7.49 -40.82 -0.31 3.58 16 33 H 0.07 0.92 8.11 -51.93 -0.42 0.50 16 34 H 0.07 0.95 7.78 -51.93 -0.40 0.55 16 35 H 0.09 1.48 7.73 -52.49 -0.41 1.07 16 36 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.10 2.65 6.11 -51.93 -0.32 2.33 16 38 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 1.09 7.96 -51.93 -0.41 0.67 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 350.75 15.07 5.29 5.29 Total: -1.00 -31.03 350.75 -6.77 -37.80 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -5.94 Total: 1.60 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -1.87 Total: 0.54 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: 0.70 Total: -53.85 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: 0.08 Total: -7.53 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.03 -6.77 -37.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000654976.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.637 kcal (2) G-P(sol) polarization free energy of solvation -31.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds