Wall clock time and date at job start Tue Mar 31 2020 09:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47055 * 2 1 4 4 N 1.28716 * 126.03920 * 269.80994 * 3 2 1 5 5 N 1.28513 * 110.63735 * 180.30099 * 4 3 2 6 6 C 1.33316 * 109.44155 * 359.71271 * 5 4 3 7 7 C 1.37009 * 106.37076 * 359.97438 * 6 5 4 8 8 C 1.47234 * 127.18870 * 180.02562 * 7 6 5 9 9 O 1.21611 * 120.00248 * 175.47467 * 8 7 6 10 10 N 1.34783 * 119.99971 * 355.46890 * 8 7 6 11 11 C 1.46494 * 120.00187 * 184.43849 * 10 8 7 12 12 C 1.50694 * 109.47270 * 180.02562 * 11 10 8 13 13 C 1.29460 * 117.69632 * 94.99917 * 12 11 10 14 14 C 1.50322 * 123.65292 * 180.57520 * 13 12 11 15 15 N 1.47006 * 109.16423 * 349.28589 * 14 13 12 16 16 C 1.36943 * 121.37228 * 222.96775 * 15 14 13 17 17 H 1.07999 * 119.99861 * 158.69954 * 16 15 14 18 18 C 1.38815 * 119.99712 * 338.70403 * 16 15 14 19 19 N 1.31613 * 120.00034 * 346.70600 * 18 16 15 20 20 Si 1.86802 * 119.99791 * 166.70865 * 18 16 15 21 21 H 1.48503 * 109.46966 * 59.99815 * 20 18 16 22 22 H 1.48502 * 109.47021 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47214 * 299.99809 * 20 18 16 24 24 C 1.47340 * 117.25425 * 42.94561 * 15 14 13 25 25 C 1.49962 * 117.69103 * 275.22034 * 12 11 10 26 26 H 1.09004 * 109.47516 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47146 * 299.99783 * 1 2 3 28 28 H 1.08999 * 109.47031 * 60.00170 * 1 2 3 29 29 H 1.08998 * 109.47068 * 239.99673 * 2 1 3 30 30 H 1.08997 * 109.47195 * 120.00338 * 2 1 3 31 31 H 1.07998 * 126.81413 * 179.97438 * 6 5 4 32 32 H 0.97001 * 119.99603 * 4.43660 * 10 8 7 33 33 H 1.08998 * 109.47218 * 59.99616 * 11 10 8 34 34 H 1.09002 * 109.46966 * 300.00135 * 11 10 8 35 35 H 1.07998 * 118.16891 * 0.85603 * 13 12 11 36 36 H 1.08999 * 109.51768 * 109.18851 * 14 13 12 37 37 H 1.08991 * 109.52310 * 229.37210 * 14 13 12 38 38 H 0.97006 * 119.99782 * 180.02562 * 19 18 16 39 39 H 1.08999 * 109.77616 * 57.81090 * 24 15 14 40 40 H 1.08995 * 109.77685 * 178.62250 * 24 15 14 41 41 H 1.08998 * 109.43910 * 40.82040 * 25 12 11 42 42 H 1.09006 * 109.13120 * 281.42678 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2740 2.0940 -1.0408 5 7 2.6918 3.2604 -0.6995 6 6 2.7173 3.3510 0.6304 7 6 2.2797 2.1438 1.1081 8 6 2.1284 1.7466 2.5178 9 8 1.6487 0.6644 2.7965 10 7 2.5216 2.5823 3.4994 11 6 2.4617 2.1495 4.8977 12 6 2.9528 3.2608 5.7890 13 6 2.0688 4.0533 6.3053 14 6 2.4099 5.2109 7.2014 15 7 3.8269 5.1245 7.5832 16 6 4.2347 5.3625 8.8687 17 1 5.1811 4.9747 9.2154 18 6 3.4315 6.1021 9.7259 19 7 2.4177 6.7913 9.2470 20 14 3.7897 6.1192 11.5592 21 1 5.1541 6.6575 11.7919 22 1 2.7946 6.9782 12.2499 23 1 3.7056 4.7360 12.0929 24 6 4.7902 4.7707 6.5259 25 6 4.4315 3.3740 6.0114 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8899 31 1 3.0223 4.2063 1.2150 32 1 2.8443 3.4703 3.2799 33 1 3.0909 1.2697 5.0330 34 1 1.4323 1.9033 5.1580 35 1 1.0279 3.8697 6.0832 36 1 2.2319 6.1466 6.6714 37 1 1.7886 5.1743 8.0962 38 1 1.8567 7.3085 9.8460 39 1 4.7249 5.4919 5.7112 40 1 5.8006 4.7651 6.9345 41 1 4.9546 3.1902 5.0730 42 1 4.7405 2.6293 6.7450 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000654976.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:32:43 Heat of formation + Delta-G solvation = 81.031103 kcal Electronic energy + Delta-G solvation = -24539.731586 eV Core-core repulsion = 20943.304186 eV Total energy + Delta-G solvation = -3596.427400 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.40513 -40.76351 -39.29879 -36.81455 -36.17755 -34.63667 -33.03922 -32.14002 -31.80928 -31.33325 -28.65311 -26.41498 -25.49110 -24.64420 -24.28174 -23.19812 -22.54059 -21.55846 -19.59247 -19.27124 -18.03490 -17.56722 -17.36124 -17.12269 -16.90021 -16.15658 -15.90473 -15.80234 -15.44634 -15.21570 -15.08246 -14.86158 -14.45375 -13.99901 -13.89910 -13.60436 -13.27445 -13.22135 -13.18929 -12.89980 -12.73411 -12.62863 -12.56869 -12.24114 -12.07910 -12.01268 -11.68094 -11.41625 -11.29432 -11.21117 -10.68429 -10.66874 -10.16745 -9.62489 -8.75022 -7.84881 -5.25294 -0.17941 0.93078 1.18629 1.31032 1.49043 1.50947 1.57276 1.95291 2.22729 2.52998 3.27904 3.31710 3.41339 3.65098 3.66073 3.87737 3.88862 3.95748 4.00451 4.23233 4.33922 4.47301 4.57442 4.62028 4.66974 4.77572 4.81628 4.88233 4.94624 4.96188 5.07926 5.13601 5.22214 5.27968 5.35042 5.46015 5.56025 5.62788 5.80136 6.20596 6.32169 6.36556 6.91855 7.16517 7.22880 7.87351 8.38269 9.22364 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.032543 B = 0.002662 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.200436 B =10516.318433 C =10791.526008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.099 3.901 3 N -0.249 5.249 4 N -0.077 5.077 5 N -0.302 5.302 6 C 0.010 3.990 7 C -0.078 4.078 8 C 0.598 3.402 9 O -0.560 6.560 10 N -0.691 5.691 11 C 0.171 3.829 12 C -0.142 4.142 13 C -0.137 4.137 14 C 0.199 3.801 15 N -0.617 5.617 16 C -0.253 4.253 17 H 0.072 0.928 18 C -0.057 4.057 19 N -0.941 5.941 20 Si 0.968 3.032 21 H -0.277 1.277 22 H -0.296 1.296 23 H -0.280 1.280 24 C 0.137 3.863 25 C -0.085 4.085 26 H 0.110 0.890 27 H 0.048 0.952 28 H 0.063 0.937 29 H 0.130 0.870 30 H 0.117 0.883 31 H 0.229 0.771 32 H 0.416 0.584 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.114 0.886 36 H 0.013 0.987 37 H 0.066 0.934 38 H 0.249 0.751 39 H 0.030 0.970 40 H 0.057 0.943 41 H 0.091 0.909 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.267 -13.090 -16.964 21.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.020 4.020 3 N -0.047 5.047 4 N -0.057 5.057 5 N -0.164 5.164 6 C -0.151 4.151 7 C -0.212 4.212 8 C 0.383 3.617 9 O -0.439 6.439 10 N -0.343 5.343 11 C 0.049 3.951 12 C -0.143 4.143 13 C -0.158 4.158 14 C 0.074 3.926 15 N -0.341 5.341 16 C -0.383 4.383 17 H 0.090 0.910 18 C -0.252 4.252 19 N -0.589 5.589 20 Si 0.796 3.204 21 H -0.203 1.203 22 H -0.222 1.222 23 H -0.206 1.206 24 C 0.012 3.988 25 C -0.124 4.124 26 H 0.129 0.871 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.148 0.852 30 H 0.135 0.865 31 H 0.245 0.755 32 H 0.253 0.747 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.132 0.868 36 H 0.030 0.970 37 H 0.084 0.916 38 H 0.058 0.942 39 H 0.048 0.952 40 H 0.076 0.924 41 H 0.110 0.890 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.658 -13.778 -18.203 22.890 hybrid contribution -0.024 0.805 2.225 2.366 sum -1.682 -12.973 -15.978 20.650 Atomic orbital electron populations 1.22060 0.91927 1.05340 1.02265 1.22659 0.97396 0.74488 1.07482 1.48196 1.39320 1.14215 1.02983 1.78215 1.15771 0.99407 1.12289 1.74892 1.17185 1.10494 1.13789 1.24478 1.00989 0.98177 0.91426 1.22002 1.13718 0.94759 0.90770 1.16687 0.78083 0.84182 0.82776 1.90792 1.45841 1.23316 1.83980 1.45699 1.64757 1.18197 1.05615 1.20342 1.01383 0.95552 0.77830 1.20562 0.95898 0.97465 1.00399 1.23007 0.99255 0.96531 0.96975 1.19536 0.85521 0.91827 0.95731 1.44443 1.02460 1.81485 1.05739 1.19531 1.04783 1.25897 0.88078 0.91027 1.25670 0.99368 0.97657 1.02459 1.70135 1.21142 1.33133 1.34478 0.85326 0.77162 0.77290 0.80595 1.20266 1.22199 1.20644 1.21158 0.92946 0.94169 0.90543 1.20704 0.92345 0.98127 1.01184 0.87103 0.93253 0.91795 0.85188 0.86477 0.75497 0.74691 0.90259 0.91132 0.86811 0.96956 0.91588 0.94199 0.95167 0.92402 0.89033 0.91879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 10.24 71.98 0.74 -1.28 16 2 C 0.10 1.40 6.55 86.38 0.57 1.96 16 3 N -0.25 -5.07 3.39 -335.44 -1.14 -6.20 16 4 N -0.08 -1.82 13.14 37.02 0.49 -1.34 16 5 N -0.30 -7.37 12.35 -57.50 -0.71 -8.08 16 6 C 0.01 0.20 11.54 84.18 0.97 1.17 16 7 C -0.08 -1.59 6.98 40.41 0.28 -1.31 16 8 C 0.60 12.87 7.80 86.61 0.68 13.55 16 9 O -0.56 -14.55 14.94 -4.07 -0.06 -14.61 16 10 N -0.69 -13.27 5.54 -470.32 -2.60 -15.88 16 11 C 0.17 3.89 5.66 85.63 0.48 4.37 16 12 C -0.14 -4.03 5.23 -15.15 -0.08 -4.11 16 13 C -0.14 -4.67 9.47 27.10 0.26 -4.41 16 14 C 0.20 9.13 5.27 85.42 0.45 9.58 16 15 N -0.62 -29.47 3.02 -703.39 -2.12 -31.59 16 16 C -0.25 -13.47 9.75 84.03 0.82 -12.65 16 17 H 0.07 3.69 7.86 -2.91 -0.02 3.66 16 18 C -0.06 -3.13 5.09 84.86 0.43 -2.70 16 19 N -0.94 -54.17 10.74 21.65 0.23 -53.94 16 20 Si 0.97 44.12 29.57 68.60 2.03 46.15 16 21 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 22 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 23 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 24 C 0.14 5.07 6.58 86.25 0.57 5.64 16 25 C -0.08 -2.43 5.94 29.65 0.18 -2.26 16 26 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 27 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.12 1.76 6.59 -2.39 -0.02 1.75 16 31 H 0.23 2.61 7.55 -2.91 -0.02 2.58 16 32 H 0.42 6.46 7.49 -92.71 -0.69 5.77 16 33 H 0.08 1.75 8.11 -2.39 -0.02 1.73 16 34 H 0.07 1.68 7.78 -2.39 -0.02 1.67 16 35 H 0.11 3.41 7.73 -2.91 -0.02 3.39 16 36 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.07 3.51 6.11 -2.39 -0.01 3.49 16 38 H 0.25 13.99 8.31 -92.70 -0.77 13.22 16 39 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.06 2.10 7.96 -2.39 -0.02 2.08 16 41 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 Total: -1.00 -68.35 350.75 2.79 -65.55 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 0.35 Total: 12.38 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: 6.34 Total: 7.55 kcal Atomic # 7 Polarization: -111.17 SS G_CDS: -5.86 Total: -117.03 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.06 Total: -14.61 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -68.35 2.79 -65.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000654976.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.582 kcal (2) G-P(sol) polarization free energy of solvation -68.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds