Wall clock time and date at job start Tue Mar 31 2020 09:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46507 * 109.46807 * 2 1 4 4 C 1.34811 * 126.59003 * 125.27179 * 3 2 1 5 5 C 1.36604 * 106.83780 * 180.14715 * 4 3 2 6 6 C 1.47522 * 125.77018 * 179.89644 * 5 4 3 7 7 O 1.21592 * 120.00209 * 359.72153 * 6 5 4 8 8 N 1.34773 * 119.99774 * 179.71933 * 6 5 4 9 9 C 1.46504 * 119.99907 * 179.72585 * 8 6 5 10 10 C 1.50698 * 109.47168 * 180.27273 * 9 8 6 11 11 C 1.29456 * 117.69241 * 94.99972 * 10 9 8 12 12 C 1.50328 * 123.65013 * 180.86017 * 11 10 9 13 13 N 1.47009 * 109.16356 * 349.02070 * 12 11 10 14 14 C 1.36936 * 121.37430 * 222.96902 * 13 12 11 15 15 H 1.07994 * 120.00158 * 155.98340 * 14 13 12 16 16 C 1.38816 * 119.99627 * 335.97998 * 14 13 12 17 17 N 1.31616 * 120.00470 * 344.49529 * 16 14 13 18 18 Si 1.86800 * 119.99640 * 164.49763 * 16 14 13 19 19 H 1.48500 * 109.47344 * 94.45427 * 18 16 14 20 20 H 1.48501 * 109.46971 * 214.45606 * 18 16 14 21 21 H 1.48499 * 109.47130 * 334.45349 * 18 16 14 22 22 C 1.47340 * 117.24841 * 42.95259 * 13 12 11 23 23 C 1.49966 * 117.69591 * 274.74327 * 10 9 8 24 24 N 1.34394 * 108.45632 * 359.63932 * 5 4 3 25 25 N 1.28767 * 109.52555 * 0.22068 * 24 5 4 26 26 H 1.08997 * 109.47073 * 299.99963 * 1 2 3 27 27 H 1.09004 * 109.47087 * 59.99731 * 1 2 3 28 28 H 1.08994 * 109.47248 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47073 * 240.00037 * 2 1 3 30 30 H 1.08995 * 109.46835 * 119.99497 * 2 1 3 31 31 H 1.07999 * 126.58649 * 0.02562 * 4 3 2 32 32 H 0.97002 * 119.99877 * 359.97438 * 8 6 5 33 33 H 1.08997 * 109.46814 * 300.27709 * 9 8 6 34 34 H 1.09000 * 109.47101 * 60.27545 * 9 8 6 35 35 H 1.07996 * 118.17623 * 0.87874 * 11 10 9 36 36 H 1.09004 * 109.52126 * 108.92653 * 12 11 10 37 37 H 1.09001 * 109.51849 * 229.11440 * 12 11 10 38 38 H 0.96998 * 120.00118 * 179.97438 * 17 16 14 39 39 H 1.09003 * 109.77972 * 57.80817 * 22 13 12 40 40 H 1.08998 * 109.77360 * 178.61528 * 22 13 12 41 41 H 1.09003 * 109.31592 * 281.28633 * 23 10 9 42 42 H 1.08997 * 109.31925 * 40.71284 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8755 1.9306 0.8837 5 6 3.0500 3.2326 0.5088 6 6 3.9074 4.2193 1.1925 7 8 4.5318 3.8979 2.1851 8 7 3.9985 5.4771 0.7169 9 6 4.8452 6.4587 1.3994 10 6 4.7672 7.7785 0.6762 11 6 3.9155 8.6522 1.1089 12 6 3.7133 10.0017 0.4783 13 7 4.7889 10.2463 -0.4935 14 6 5.4129 11.4625 -0.5752 15 1 6.4110 11.5311 -0.9818 16 6 4.7624 12.6072 -0.1353 17 7 3.4627 12.5874 0.0711 18 14 5.7317 14.1758 0.1635 19 1 5.6810 15.0282 -1.0515 20 1 5.1408 14.9121 1.3098 21 1 7.1441 13.8342 0.4699 22 6 5.1681 9.1288 -1.3756 23 6 5.6857 7.9895 -0.4903 24 7 2.3130 3.4609 -0.5917 25 7 1.6878 2.3847 -0.9218 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 3.3344 1.4369 1.7275 32 1 3.5007 5.7333 -0.0752 33 1 4.4998 6.5855 2.4254 34 1 5.8771 6.1075 1.4042 35 1 3.3172 8.3975 1.9712 36 1 2.7499 10.0250 -0.0312 37 1 3.7372 10.7715 1.2496 38 1 3.0082 13.3872 0.3788 39 1 4.2989 8.7949 -1.9424 40 1 5.9543 9.4490 -2.0593 41 1 6.6823 8.2367 -0.1244 42 1 5.7378 7.0734 -1.0786 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001315953.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:32:46 Heat of formation + Delta-G solvation = 98.254603 kcal Electronic energy + Delta-G solvation = -24037.704315 eV Core-core repulsion = 20442.023782 eV Total energy + Delta-G solvation = -3595.680533 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.43008 -39.40276 -37.67602 -35.79423 -34.91453 -32.86434 -31.66257 -31.08025 -30.39806 -29.63994 -26.99838 -25.04355 -24.51711 -23.14274 -22.62107 -22.07322 -21.04498 -20.37235 -18.43230 -17.58175 -16.71089 -16.45462 -16.01215 -15.62056 -15.30157 -14.94249 -14.87131 -14.65486 -14.16575 -13.78337 -13.62534 -13.40341 -13.24053 -12.89173 -12.88141 -12.48105 -12.22170 -12.04622 -11.99263 -11.52963 -11.43023 -11.30758 -10.89342 -10.70259 -10.67640 -10.39438 -10.29735 -10.14930 -9.79517 -9.56119 -9.54082 -8.91068 -8.65319 -8.02370 -6.71355 -5.77159 -3.15613 0.88627 1.56882 1.70700 2.62907 3.26065 3.39821 3.46894 3.48452 3.49555 3.90428 4.02341 4.26335 4.49083 4.51884 4.55119 4.74906 4.90786 4.97395 5.16952 5.22781 5.39234 5.43390 5.47313 5.58631 5.64738 5.86188 5.97384 6.05063 6.12671 6.21955 6.39043 6.47791 6.56749 6.77902 6.92493 7.20857 7.29401 7.36291 7.52363 7.75776 7.79607 7.85746 8.20762 8.40739 9.22177 9.85109 10.43418 11.33363 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.033817 B = 0.002432 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.787380 B =11511.085999 C =11782.472115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.118 3.882 3 N -0.363 5.363 4 C 0.091 3.909 5 C -0.099 4.099 6 C 0.600 3.400 7 O -0.547 6.547 8 N -0.703 5.703 9 C 0.158 3.842 10 C -0.167 4.167 11 C -0.122 4.122 12 C 0.194 3.806 13 N -0.596 5.596 14 C -0.244 4.244 15 H 0.069 0.931 16 C -0.002 4.002 17 N -0.910 5.910 18 Si 0.904 3.096 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.279 1.279 22 C 0.143 3.857 23 C -0.090 4.090 24 N -0.202 5.202 25 N -0.063 5.063 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.204 0.796 32 H 0.410 0.590 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.042 0.958 37 H 0.093 0.907 38 H 0.254 0.746 39 H 0.025 0.975 40 H 0.057 0.943 41 H 0.064 0.936 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.061 -26.282 1.703 26.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.003 4.003 3 N -0.149 5.149 4 C -0.066 4.066 5 C -0.238 4.238 6 C 0.384 3.616 7 O -0.425 6.425 8 N -0.353 5.353 9 C 0.035 3.965 10 C -0.168 4.168 11 C -0.143 4.143 12 C 0.069 3.931 13 N -0.319 5.319 14 C -0.374 4.374 15 H 0.086 0.914 16 C -0.200 4.200 17 N -0.555 5.555 18 Si 0.734 3.266 19 H -0.215 1.215 20 H -0.216 1.216 21 H -0.205 1.205 22 C 0.017 3.983 23 C -0.129 4.129 24 N -0.076 5.076 25 N -0.044 5.044 26 H 0.083 0.917 27 H 0.094 0.906 28 H 0.101 0.899 29 H 0.117 0.883 30 H 0.123 0.877 31 H 0.221 0.779 32 H 0.246 0.754 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.113 0.887 36 H 0.060 0.940 37 H 0.111 0.889 38 H 0.064 0.936 39 H 0.043 0.957 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.513 -26.033 1.215 26.449 hybrid contribution 0.642 0.474 0.785 1.119 sum -3.871 -25.559 2.000 25.928 Atomic orbital electron populations 1.22092 0.92678 1.03700 1.04165 1.22037 0.96940 0.76204 1.05097 1.50634 1.31585 1.12384 1.20261 1.23380 0.93144 0.94094 0.96017 1.21555 1.07866 0.95078 0.99339 1.16787 0.80240 0.81457 0.83112 1.90794 1.46451 1.79370 1.25845 1.46015 1.47875 1.09725 1.31668 1.20523 0.94416 0.86294 0.95225 1.20476 1.01538 0.94267 1.00478 1.23290 0.95256 0.98128 0.97646 1.19765 0.90766 0.90032 0.92556 1.44136 1.41847 1.08858 1.37040 1.19181 0.96415 0.83430 1.38342 0.91373 1.24990 0.95188 0.97515 1.02325 1.70010 1.06673 1.28329 1.50499 0.86245 0.79410 0.83349 0.77589 1.21532 1.21596 1.20488 1.20999 0.97326 0.88221 0.91777 1.20783 0.97957 0.99010 0.95144 1.74686 1.04649 1.18123 1.10098 1.81989 1.20392 0.90291 1.11716 0.91651 0.90625 0.89870 0.88321 0.87696 0.77918 0.75418 0.91386 0.91302 0.88746 0.94034 0.88887 0.93637 0.95724 0.92480 0.91718 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.61 10.12 37.16 0.38 -0.24 16 2 C 0.12 0.43 7.26 -4.04 -0.03 0.40 16 3 N -0.36 -3.03 3.69 -61.06 -0.23 -3.25 16 4 C 0.09 0.82 11.27 -16.83 -0.19 0.63 16 5 C -0.10 -1.25 6.99 -83.55 -0.58 -1.83 16 6 C 0.60 8.73 7.82 -12.48 -0.10 8.63 16 7 O -0.55 -9.06 16.86 5.28 0.09 -8.97 16 8 N -0.70 -10.20 5.55 -62.53 -0.35 -10.55 16 9 C 0.16 2.43 5.66 -5.19 -0.03 2.40 16 10 C -0.17 -2.94 5.22 -100.99 -0.53 -3.46 16 11 C -0.12 -2.37 9.47 -35.78 -0.34 -2.71 16 12 C 0.19 4.64 5.23 -5.10 -0.03 4.61 16 13 N -0.60 -15.03 3.01 -173.55 -0.52 -15.55 16 14 C -0.24 -6.73 9.71 -15.06 -0.15 -6.88 16 15 H 0.07 1.84 7.88 -52.49 -0.41 1.43 16 16 C 0.00 -0.07 5.01 -17.43 -0.09 -0.16 16 17 N -0.91 -26.37 11.08 55.49 0.61 -25.75 16 18 Si 0.90 21.85 29.58 -169.99 -5.03 16.82 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C 0.14 3.01 6.59 -3.43 -0.02 2.99 16 23 C -0.09 -1.60 5.95 -28.09 -0.17 -1.77 16 24 N -0.20 -2.74 12.04 32.85 0.40 -2.35 16 25 N -0.06 -0.76 13.65 60.35 0.82 0.06 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 29 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.10 0.09 8.08 -51.93 -0.42 -0.33 16 31 H 0.20 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.41 5.84 8.15 -40.82 -0.33 5.51 16 33 H 0.07 1.06 7.78 -51.93 -0.40 0.65 16 34 H 0.07 1.05 8.11 -51.93 -0.42 0.63 16 35 H 0.09 1.65 7.73 -52.49 -0.41 1.24 16 36 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.09 2.47 6.41 -51.93 -0.33 2.14 16 38 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 356.67 15.07 5.37 5.37 Total: -1.00 -33.41 356.67 -6.78 -40.18 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -6.08 Total: 1.38 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -1.87 Total: 2.61 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: 0.74 Total: -57.39 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.09 Total: -8.97 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.41 -6.78 -40.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001315953.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.438 kcal (2) G-P(sol) polarization free energy of solvation -33.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds