Wall clock time and date at job start Tue Mar 31 2020 08:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50699 * 119.99640 * 2 1 4 4 N 1.46503 * 109.46791 * 124.99982 * 3 2 1 5 5 C 1.34819 * 126.59396 * 125.27093 * 4 3 2 6 6 C 1.36595 * 106.83811 * 180.10476 * 5 4 3 7 7 C 1.47523 * 125.76694 * 179.89904 * 6 5 4 8 8 O 1.21593 * 120.00258 * 359.71510 * 7 6 5 9 9 N 1.34771 * 119.99800 * 179.72063 * 7 6 5 10 10 C 1.46505 * 120.00267 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.52205 * 325.08314 * 10 9 7 12 12 C 1.53045 * 109.50044 * 205.00025 * 10 9 7 13 13 C 1.53034 * 109.53607 * 178.68457 * 12 10 9 14 14 C 1.53196 * 109.31636 * 61.36426 * 13 12 10 15 15 N 1.46929 * 108.77255 * 305.36157 * 14 13 12 16 16 C 1.36932 * 120.63237 * 233.58460 * 15 14 13 17 17 H 1.07990 * 120.00340 * 152.19317 * 16 15 14 18 18 C 1.38818 * 119.99695 * 332.19397 * 16 15 14 19 19 N 1.31620 * 120.00037 * 143.76745 * 18 16 15 20 20 Si 1.86799 * 119.99844 * 323.75740 * 18 16 15 21 21 H 1.48491 * 109.47487 * 270.00250 * 20 18 16 22 22 H 1.48506 * 109.46907 * 150.00273 * 20 18 16 23 23 H 1.48500 * 109.47391 * 30.00754 * 20 18 16 24 24 C 1.46922 * 118.73544 * 53.86436 * 15 14 13 25 25 N 1.34394 * 108.46038 * 359.63750 * 6 5 4 26 26 N 1.28760 * 109.52254 * 0.22446 * 25 6 5 27 27 H 1.07995 * 119.99841 * 0.02562 * 1 2 3 28 28 H 1.07994 * 119.99581 * 179.97438 * 1 2 3 29 29 H 1.08001 * 119.99931 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47398 * 5.00425 * 3 2 1 31 31 H 1.09003 * 109.47175 * 244.99654 * 3 2 1 32 32 H 1.08007 * 126.58134 * 359.97238 * 5 4 3 33 33 H 0.97004 * 120.00216 * 0.02562 * 9 7 6 34 34 H 1.08997 * 109.45712 * 58.65900 * 12 10 9 35 35 H 1.09004 * 109.44572 * 298.69767 * 12 10 9 36 36 H 1.09006 * 109.49989 * 301.40925 * 13 12 10 37 37 H 1.09000 * 109.49668 * 181.31400 * 13 12 10 38 38 H 1.08999 * 109.58420 * 185.57596 * 14 13 12 39 39 H 1.08994 * 109.70095 * 65.21863 * 14 13 12 40 40 H 0.97002 * 119.99508 * 354.92902 * 19 18 16 41 41 H 1.08998 * 109.58991 * 65.92020 * 24 15 14 42 42 H 1.09003 * 109.58582 * 186.34861 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 4.3222 1.5548 1.0747 6 6 4.7899 1.4871 2.3563 7 6 6.1937 1.6671 2.7725 8 8 7.0506 1.8929 1.9398 9 7 6.5265 1.5810 4.0756 10 6 7.9207 1.7591 4.4890 11 1 8.5820 1.3471 3.7268 12 6 8.1566 1.0343 5.8161 13 6 9.6208 1.1923 6.2322 14 6 9.9337 2.6787 6.4308 15 7 9.5727 3.4057 5.2061 16 6 10.4847 4.2115 4.5785 17 1 10.4157 4.3781 3.5138 18 6 11.4982 4.8143 5.3111 19 7 12.6946 4.9607 4.7825 20 14 11.1636 5.4180 7.0469 21 1 10.6983 6.8274 6.9998 22 1 12.4108 5.3350 7.8488 23 1 10.1160 4.5715 7.6722 24 6 8.2125 3.2564 4.6710 25 7 3.7541 1.2347 3.1745 26 7 2.6729 1.1365 2.4822 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5399 -0.9353 -0.0004 29 1 1.8501 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4027 -0.9314 32 1 4.9051 1.7475 0.1861 33 1 5.8430 1.4005 4.7399 34 1 7.9247 -0.0241 5.6979 35 1 7.5126 1.4637 6.5836 36 1 10.2663 0.7855 5.4536 37 1 9.7937 0.6563 7.1654 38 1 10.9978 2.8047 6.6303 39 1 9.3562 3.0668 7.2698 40 1 12.8892 4.5824 3.9107 41 1 7.4957 3.6890 5.3690 42 1 8.1406 3.7637 3.7089 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008792582.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:41:28 Heat of formation + Delta-G solvation = 108.097769 kcal Electronic energy + Delta-G solvation = -24450.849271 eV Core-core repulsion = 20855.595570 eV Total energy + Delta-G solvation = -3595.253701 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.37898 -39.43929 -37.44795 -36.40178 -34.38510 -33.19182 -32.48619 -31.10205 -30.70764 -29.03553 -27.45658 -24.93388 -24.05899 -22.64915 -22.09060 -21.61994 -20.86055 -20.10231 -19.60451 -18.20217 -17.20563 -16.37411 -16.28675 -15.90261 -15.73077 -14.97890 -14.80585 -14.67319 -14.16025 -13.97794 -13.82056 -13.55382 -13.25702 -12.98885 -12.70566 -12.34783 -12.30439 -12.06104 -11.95258 -11.54063 -11.50657 -10.99668 -10.69977 -10.58014 -10.54834 -10.22446 -10.12800 -9.93131 -9.78376 -9.54489 -9.45034 -9.18739 -8.84972 -8.16687 -6.92336 -6.29387 -3.17291 0.92804 1.26254 1.64463 2.07660 3.27553 3.40018 3.56360 3.62711 3.76866 3.93808 4.06188 4.15809 4.42314 4.60014 4.71960 4.80662 4.82430 5.08586 5.09717 5.22016 5.25873 5.38336 5.51999 5.59379 5.64882 5.87948 5.91997 5.93087 6.04909 6.11032 6.14608 6.35795 6.41908 6.54548 6.60579 6.71988 6.85583 6.88584 7.06993 7.60504 7.86390 8.16139 8.38041 8.53395 9.11659 9.71866 10.31357 11.11013 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.031330 B = 0.002741 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.493039 B =10211.730451 C =10531.605684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.181 4.181 3 C 0.151 3.849 4 N -0.361 5.361 5 C 0.091 3.909 6 C -0.095 4.095 7 C 0.600 3.400 8 O -0.534 6.534 9 N -0.706 5.706 10 C 0.126 3.874 11 H 0.090 0.910 12 C -0.116 4.116 13 C -0.135 4.135 14 C 0.139 3.861 15 N -0.595 5.595 16 C -0.359 4.359 17 H 0.065 0.935 18 C 0.003 3.997 19 N -0.899 5.899 20 Si 1.015 2.985 21 H -0.299 1.299 22 H -0.294 1.294 23 H -0.269 1.269 24 C 0.140 3.860 25 N -0.206 5.206 26 N -0.062 5.062 27 H 0.103 0.897 28 H 0.108 0.892 29 H 0.118 0.882 30 H 0.102 0.898 31 H 0.114 0.886 32 H 0.205 0.795 33 H 0.403 0.597 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.031 0.969 40 H 0.267 0.733 41 H 0.021 0.979 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.402 -11.231 -8.003 27.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.200 4.200 3 C 0.031 3.969 4 N -0.147 5.147 5 C -0.065 4.065 6 C -0.235 4.235 7 C 0.383 3.617 8 O -0.409 6.409 9 N -0.356 5.356 10 C 0.021 3.979 11 H 0.108 0.892 12 C -0.154 4.154 13 C -0.175 4.175 14 C 0.013 3.987 15 N -0.319 5.319 16 C -0.486 4.486 17 H 0.083 0.917 18 C -0.201 4.201 19 N -0.536 5.536 20 Si 0.844 3.156 21 H -0.227 1.227 22 H -0.221 1.221 23 H -0.195 1.195 24 C 0.013 3.987 25 N -0.080 5.080 26 N -0.042 5.042 27 H 0.121 0.879 28 H 0.126 0.874 29 H 0.136 0.864 30 H 0.120 0.880 31 H 0.132 0.868 32 H 0.222 0.778 33 H 0.237 0.763 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.049 0.951 40 H 0.077 0.923 41 H 0.038 0.962 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -23.189 -10.520 -6.389 26.253 hybrid contribution -0.450 -0.621 -1.854 2.007 sum -23.640 -11.142 -8.243 27.403 Atomic orbital electron populations 1.24002 0.95461 1.02861 0.96308 1.22872 0.96375 0.97399 1.03359 1.21108 0.91970 0.98177 0.85673 1.50525 1.06701 1.48370 1.09068 1.23438 0.84512 0.97726 1.00863 1.21617 0.95603 1.15772 0.90485 1.16752 0.84663 0.77112 0.83196 1.90852 1.49087 1.49319 1.51685 1.45915 1.11169 1.71368 1.07169 1.21852 0.80184 0.99196 0.96660 0.89233 1.21674 0.98324 0.99186 0.96207 1.22069 0.94883 0.99900 1.00599 1.21435 0.99370 0.88922 0.88939 1.44296 1.07939 1.51214 1.28450 1.20068 1.08036 1.27722 0.92809 0.91732 1.26120 0.92499 0.96874 1.04597 1.70880 1.18323 1.45956 1.18432 0.84662 0.75774 0.77452 0.77703 1.22679 1.22092 1.19507 1.21340 0.87402 0.91829 0.98139 1.74637 0.96453 1.09993 1.26943 1.81984 1.16949 1.21973 0.83335 0.87865 0.87371 0.86426 0.87988 0.86765 0.77797 0.76256 0.92544 0.91972 0.91785 0.92289 0.91468 0.95128 0.92301 0.96160 0.91931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 14.32 29.01 0.42 -0.18 16 2 C -0.18 -0.91 9.72 -36.03 -0.35 -1.26 16 3 C 0.15 0.72 6.98 -5.19 -0.04 0.69 16 4 N -0.36 -3.30 3.68 -62.24 -0.23 -3.53 16 5 C 0.09 0.93 11.27 -16.83 -0.19 0.74 16 6 C -0.10 -1.29 6.99 -83.55 -0.58 -1.88 16 7 C 0.60 9.76 7.79 -12.48 -0.10 9.66 16 8 O -0.53 -10.41 16.53 5.28 0.09 -10.32 16 9 N -0.71 -10.99 5.08 -54.51 -0.28 -11.26 16 10 C 0.13 2.28 2.62 -67.58 -0.18 2.10 16 11 H 0.09 1.85 7.58 -51.93 -0.39 1.46 16 12 C -0.12 -1.82 5.35 -26.69 -0.14 -1.97 16 13 C -0.13 -2.39 6.08 -26.61 -0.16 -2.55 16 14 C 0.14 3.04 4.37 -3.71 -0.02 3.03 16 15 N -0.60 -14.72 2.71 -172.06 -0.47 -15.18 16 16 C -0.36 -10.36 9.70 -15.06 -0.15 -10.51 16 17 H 0.06 2.03 8.06 -52.49 -0.42 1.61 16 18 C 0.00 0.09 4.81 -17.43 -0.08 0.00 16 19 N -0.90 -27.99 13.70 55.49 0.76 -27.23 16 20 Si 1.01 25.60 27.00 -169.99 -4.59 21.01 16 21 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 22 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 23 H -0.27 -6.20 4.73 56.52 0.27 -5.93 16 24 C 0.14 3.03 6.12 -3.49 -0.02 3.01 16 25 N -0.21 -2.83 12.04 32.84 0.40 -2.44 16 26 N -0.06 -0.77 13.64 60.35 0.82 0.05 16 27 H 0.10 0.31 7.84 -52.49 -0.41 -0.10 16 28 H 0.11 0.35 8.06 -52.49 -0.42 -0.07 16 29 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 30 H 0.10 0.37 7.79 -51.93 -0.40 -0.04 16 31 H 0.11 0.23 8.08 -51.93 -0.42 -0.19 16 32 H 0.21 1.49 8.06 -52.48 -0.42 1.07 16 33 H 0.40 5.43 8.29 -40.82 -0.34 5.09 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 1.59 5.82 -51.93 -0.30 1.29 16 39 H 0.03 0.66 6.59 -51.93 -0.34 0.31 16 40 H 0.27 8.28 8.73 -40.82 -0.36 7.93 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.06 1.48 7.93 -51.93 -0.41 1.06 16 LS Contribution 351.04 15.07 5.29 5.29 Total: -1.00 -35.24 351.04 -5.91 -41.16 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -6.12 Total: 1.57 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -1.59 Total: 0.89 kcal Atomic # 7 Polarization: -60.60 SS G_CDS: 1.01 Total: -59.59 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 14 Polarization: 25.60 SS G_CDS: -4.59 Total: 21.01 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.24 -5.91 -41.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008792582.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.253 kcal (2) G-P(sol) polarization free energy of solvation -35.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds