Wall clock time and date at job start Tue Mar 31 2020 08:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50699 * 119.99640 * 2 1 4 4 N 1.46503 * 109.46791 * 124.99982 * 3 2 1 5 5 C 1.34819 * 126.59396 * 125.27093 * 4 3 2 6 6 C 1.36595 * 106.83811 * 180.10476 * 5 4 3 7 7 C 1.47523 * 125.76694 * 179.89904 * 6 5 4 8 8 O 1.21593 * 120.00258 * 359.71510 * 7 6 5 9 9 N 1.34771 * 119.99800 * 179.72063 * 7 6 5 10 10 C 1.46505 * 120.00267 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.52205 * 325.08314 * 10 9 7 12 12 C 1.53045 * 109.50044 * 205.00025 * 10 9 7 13 13 C 1.53034 * 109.53607 * 178.68457 * 12 10 9 14 14 C 1.53196 * 109.31636 * 61.36426 * 13 12 10 15 15 N 1.46929 * 108.77255 * 305.36157 * 14 13 12 16 16 C 1.36932 * 120.63237 * 233.58460 * 15 14 13 17 17 H 1.07990 * 120.00340 * 152.19317 * 16 15 14 18 18 C 1.38818 * 119.99695 * 332.19397 * 16 15 14 19 19 N 1.31620 * 120.00037 * 143.76745 * 18 16 15 20 20 Si 1.86799 * 119.99844 * 323.75740 * 18 16 15 21 21 H 1.48491 * 109.47487 * 270.00250 * 20 18 16 22 22 H 1.48506 * 109.46907 * 150.00273 * 20 18 16 23 23 H 1.48500 * 109.47391 * 30.00754 * 20 18 16 24 24 C 1.46922 * 118.73544 * 53.86436 * 15 14 13 25 25 N 1.34394 * 108.46038 * 359.63750 * 6 5 4 26 26 N 1.28760 * 109.52254 * 0.22446 * 25 6 5 27 27 H 1.07995 * 119.99841 * 0.02562 * 1 2 3 28 28 H 1.07994 * 119.99581 * 179.97438 * 1 2 3 29 29 H 1.08001 * 119.99931 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47398 * 5.00425 * 3 2 1 31 31 H 1.09003 * 109.47175 * 244.99654 * 3 2 1 32 32 H 1.08007 * 126.58134 * 359.97238 * 5 4 3 33 33 H 0.97004 * 120.00216 * 0.02562 * 9 7 6 34 34 H 1.08997 * 109.45712 * 58.65900 * 12 10 9 35 35 H 1.09004 * 109.44572 * 298.69767 * 12 10 9 36 36 H 1.09006 * 109.49989 * 301.40925 * 13 12 10 37 37 H 1.09000 * 109.49668 * 181.31400 * 13 12 10 38 38 H 1.08999 * 109.58420 * 185.57596 * 14 13 12 39 39 H 1.08994 * 109.70095 * 65.21863 * 14 13 12 40 40 H 0.97002 * 119.99508 * 354.92902 * 19 18 16 41 41 H 1.08998 * 109.58991 * 65.92020 * 24 15 14 42 42 H 1.09003 * 109.58582 * 186.34861 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 4.3222 1.5548 1.0747 6 6 4.7899 1.4871 2.3563 7 6 6.1937 1.6671 2.7725 8 8 7.0506 1.8929 1.9398 9 7 6.5265 1.5810 4.0756 10 6 7.9207 1.7591 4.4890 11 1 8.5820 1.3471 3.7268 12 6 8.1566 1.0343 5.8161 13 6 9.6208 1.1923 6.2322 14 6 9.9337 2.6787 6.4308 15 7 9.5727 3.4057 5.2061 16 6 10.4847 4.2115 4.5785 17 1 10.4157 4.3781 3.5138 18 6 11.4982 4.8143 5.3111 19 7 12.6946 4.9607 4.7825 20 14 11.1636 5.4180 7.0469 21 1 10.6983 6.8274 6.9998 22 1 12.4108 5.3350 7.8488 23 1 10.1160 4.5715 7.6722 24 6 8.2125 3.2564 4.6710 25 7 3.7541 1.2347 3.1745 26 7 2.6729 1.1365 2.4822 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5399 -0.9353 -0.0004 29 1 1.8501 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4027 -0.9314 32 1 4.9051 1.7475 0.1861 33 1 5.8430 1.4005 4.7399 34 1 7.9247 -0.0241 5.6979 35 1 7.5126 1.4637 6.5836 36 1 10.2663 0.7855 5.4536 37 1 9.7937 0.6563 7.1654 38 1 10.9978 2.8047 6.6303 39 1 9.3562 3.0668 7.2698 40 1 12.8892 4.5824 3.9107 41 1 7.4957 3.6890 5.3690 42 1 8.1406 3.7637 3.7089 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008792582.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:41:27 Heat of formation + Delta-G solvation = 81.581580 kcal Electronic energy + Delta-G solvation = -24451.999099 eV Core-core repulsion = 20855.595570 eV Total energy + Delta-G solvation = -3596.403529 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.26381 -40.80771 -39.04182 -36.94021 -36.01963 -34.39578 -33.74999 -32.58985 -32.13068 -30.45938 -28.05643 -26.87731 -25.27554 -23.61820 -23.49625 -23.20504 -21.66021 -21.30725 -20.84902 -19.37151 -19.10704 -17.39309 -17.24424 -17.10935 -16.58681 -16.17542 -16.15363 -15.73369 -15.57135 -15.50754 -15.24444 -14.96635 -14.50366 -14.39294 -14.00932 -13.60320 -13.54180 -13.37371 -13.10380 -12.67210 -12.55094 -12.49783 -12.33142 -12.04015 -11.76638 -11.70152 -11.39788 -11.36960 -11.23100 -11.13619 -10.61326 -10.51612 -10.37505 -10.10963 -9.00923 -8.58859 -5.44132 0.10685 0.58417 0.75885 1.53057 1.56460 1.58897 1.79109 2.05605 2.20899 2.60747 2.96298 3.13797 3.37955 3.52589 3.76033 3.79919 3.86217 3.94270 4.04970 4.09829 4.15811 4.37312 4.40297 4.46589 4.52825 4.69627 4.72226 4.78521 4.93073 4.96599 5.05245 5.08764 5.13627 5.22495 5.36477 5.37373 5.55020 5.56255 5.65346 5.84178 6.25930 6.42273 6.88208 6.91875 7.14235 7.61244 8.13157 8.76856 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.031330 B = 0.002741 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.493039 B =10211.730451 C =10531.605684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.198 4.198 3 C 0.141 3.859 4 N -0.345 5.345 5 C 0.108 3.892 6 C -0.122 4.122 7 C 0.600 3.400 8 O -0.575 6.575 9 N -0.697 5.697 10 C 0.140 3.860 11 H 0.057 0.943 12 C -0.107 4.107 13 C -0.128 4.128 14 C 0.130 3.870 15 N -0.611 5.611 16 C -0.354 4.354 17 H 0.016 0.984 18 C -0.048 4.048 19 N -0.933 5.933 20 Si 1.068 2.932 21 H -0.299 1.299 22 H -0.294 1.294 23 H -0.230 1.230 24 C 0.142 3.858 25 N -0.221 5.221 26 N -0.079 5.079 27 H 0.115 0.885 28 H 0.114 0.886 29 H 0.109 0.891 30 H 0.119 0.881 31 H 0.146 0.854 32 H 0.233 0.767 33 H 0.417 0.583 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.044 0.956 37 H 0.098 0.902 38 H 0.045 0.955 39 H 0.051 0.949 40 H 0.251 0.749 41 H 0.039 0.961 42 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.443 -12.446 -6.606 29.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.217 4.217 3 C 0.023 3.977 4 N -0.130 5.130 5 C -0.050 4.050 6 C -0.262 4.262 7 C 0.385 3.615 8 O -0.454 6.454 9 N -0.347 5.347 10 C 0.034 3.966 11 H 0.075 0.925 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.006 3.994 15 N -0.336 5.336 16 C -0.483 4.483 17 H 0.034 0.966 18 C -0.246 4.246 19 N -0.572 5.572 20 Si 0.892 3.108 21 H -0.227 1.227 22 H -0.221 1.221 23 H -0.154 1.154 24 C 0.016 3.984 25 N -0.095 5.095 26 N -0.059 5.059 27 H 0.134 0.866 28 H 0.132 0.868 29 H 0.127 0.873 30 H 0.137 0.863 31 H 0.164 0.836 32 H 0.249 0.751 33 H 0.254 0.746 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.063 0.937 37 H 0.117 0.883 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -26.325 -11.782 -4.979 29.268 hybrid contribution 0.363 -0.272 -2.501 2.541 sum -25.962 -12.054 -7.480 29.585 Atomic orbital electron populations 1.24212 0.95267 1.03817 0.94579 1.22858 0.96758 0.97171 1.04893 1.21617 0.92154 0.98681 0.85269 1.50827 1.06865 1.46323 1.08984 1.23837 0.84961 0.95556 1.00610 1.21327 0.94278 1.18614 0.91954 1.17113 0.85571 0.75917 0.82884 1.90831 1.50643 1.51212 1.52697 1.45730 1.10395 1.71062 1.07516 1.21440 0.81065 0.96611 0.97521 0.92503 1.21648 0.97305 1.00771 0.94746 1.21973 0.95860 0.96868 1.02025 1.21599 0.98416 0.91491 0.87884 1.44353 1.08526 1.51337 1.29404 1.19832 1.09054 1.28436 0.90968 0.96580 1.27354 0.91776 0.96877 1.08611 1.71007 1.19805 1.48177 1.18207 0.83983 0.76669 0.77175 0.72959 1.22672 1.22106 1.15371 1.21360 0.86279 0.94270 0.96528 1.74597 0.96625 1.10585 1.27705 1.81893 1.16642 1.22495 0.84897 0.86636 0.86785 0.87288 0.86292 0.83586 0.75066 0.74633 0.89567 0.89583 0.93721 0.88337 0.93627 0.93172 0.94042 0.94331 0.95507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 14.32 67.77 0.97 0.16 16 2 C -0.20 -1.56 9.72 25.64 0.25 -1.31 16 3 C 0.14 0.94 6.98 85.63 0.60 1.54 16 4 N -0.35 -5.55 3.68 -350.82 -1.29 -6.84 16 5 C 0.11 2.02 11.27 83.85 0.95 2.97 16 6 C -0.12 -3.20 6.99 40.82 0.29 -2.91 16 7 C 0.60 19.55 7.79 86.69 0.68 20.22 16 8 O -0.58 -23.16 16.53 -4.01 -0.07 -23.22 16 9 N -0.70 -21.03 5.08 -444.63 -2.26 -23.29 16 10 C 0.14 4.97 2.62 45.22 0.12 5.09 16 11 H 0.06 2.41 7.58 -2.39 -0.02 2.40 16 12 C -0.11 -3.00 5.35 30.62 0.16 -2.84 16 13 C -0.13 -4.17 6.08 30.67 0.19 -3.98 16 14 C 0.13 5.45 4.37 86.36 0.38 5.83 16 15 N -0.61 -30.44 2.71 -698.26 -1.89 -32.33 16 16 C -0.35 -21.35 9.70 84.04 0.82 -20.53 16 17 H 0.02 1.11 8.06 -2.92 -0.02 1.08 16 18 C -0.05 -2.92 4.81 84.86 0.41 -2.51 16 19 N -0.93 -60.48 13.70 21.65 0.30 -60.18 16 20 Si 1.07 51.88 27.00 68.60 1.85 53.73 16 21 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 22 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 23 H -0.23 -9.60 4.73 99.48 0.47 -9.13 16 24 C 0.14 6.19 6.12 86.51 0.53 6.72 16 25 N -0.22 -5.81 12.04 -50.00 -0.60 -6.41 16 26 N -0.08 -1.82 13.64 37.02 0.50 -1.32 16 27 H 0.12 0.37 7.84 -2.91 -0.02 0.34 16 28 H 0.11 0.51 8.06 -2.91 -0.02 0.48 16 29 H 0.11 1.04 8.06 -2.91 -0.02 1.02 16 30 H 0.12 0.46 7.79 -2.39 -0.02 0.44 16 31 H 0.15 0.07 8.08 -2.39 -0.02 0.05 16 32 H 0.23 2.86 8.06 -2.91 -0.02 2.84 16 33 H 0.42 10.39 8.29 -92.71 -0.77 9.62 16 34 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 36 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 37 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 38 H 0.05 2.10 5.82 -2.39 -0.01 2.08 16 39 H 0.05 1.93 6.59 -2.39 -0.02 1.91 16 40 H 0.25 16.53 8.73 -92.71 -0.81 15.72 16 41 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.03 1.32 7.93 -2.39 -0.02 1.30 16 Total: -1.00 -81.76 351.04 2.86 -78.91 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -0.01 Total: 12.51 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: 6.32 Total: 8.44 kcal Atomic # 7 Polarization: -125.13 SS G_CDS: -5.24 Total: -130.37 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.07 Total: -23.22 kcal Atomic # 14 Polarization: 51.88 SS G_CDS: 1.85 Total: 53.73 kcal Total: -81.76 2.86 -78.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008792582.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.489 kcal (2) G-P(sol) polarization free energy of solvation -81.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds