Wall clock time and date at job start Tue Mar 31 2020 08:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50707 * 119.99790 * 2 1 4 4 C 1.52992 * 109.47014 * 124.99980 * 3 2 1 5 5 N 1.46505 * 109.46877 * 180.02562 * 4 3 2 6 6 C 1.34811 * 126.59469 * 125.00202 * 5 4 3 7 7 C 1.36597 * 106.84053 * 180.02562 * 6 5 4 8 8 C 1.47519 * 125.77490 * 179.97438 * 7 6 5 9 9 O 1.21596 * 119.99952 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00369 * 179.97438 * 8 7 6 11 11 C 1.46492 * 120.00118 * 180.02562 * 10 8 7 12 12 H 1.09000 * 110.89195 * 328.88628 * 11 10 8 13 13 C 1.55159 * 111.00591 * 205.00380 * 11 10 8 14 14 C 1.54320 * 102.94349 * 206.42744 * 13 11 10 15 15 N 1.47018 * 107.27210 * 22.19183 * 14 13 11 16 16 C 1.36945 * 125.64695 * 181.02594 * 15 14 13 17 17 H 1.08000 * 119.99441 * 180.02562 * 16 15 14 18 18 C 1.38811 * 120.00031 * 0.02562 * 16 15 14 19 19 N 1.31619 * 120.00283 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99811 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46677 * 60.00366 * 20 18 16 22 22 H 1.48501 * 109.47050 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47416 * 300.00359 * 20 18 16 24 24 C 1.47421 * 108.70379 * 1.28563 * 15 14 13 25 25 N 1.34403 * 108.45600 * 0.23557 * 7 6 5 26 26 N 1.28763 * 109.52445 * 359.59031 * 25 7 6 27 27 H 1.07996 * 120.00049 * 0.02562 * 1 2 3 28 28 H 1.07999 * 119.99914 * 180.02562 * 1 2 3 29 29 H 1.07996 * 120.00049 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47163 * 4.99394 * 3 2 1 31 31 H 1.09000 * 109.46378 * 244.99835 * 3 2 1 32 32 H 1.08998 * 109.47634 * 59.99703 * 4 3 2 33 33 H 1.09000 * 109.47429 * 299.99211 * 4 3 2 34 34 H 1.07998 * 126.58202 * 0.02562 * 6 5 4 35 35 H 0.97006 * 119.99512 * 0.02562 * 10 8 7 36 36 H 1.08996 * 110.71852 * 88.06245 * 13 11 10 37 37 H 1.08998 * 110.86977 * 324.86115 * 13 11 10 38 38 H 1.09010 * 109.88205 * 262.77471 * 14 13 11 39 39 H 1.09004 * 110.01290 * 141.68524 * 14 13 11 40 40 H 0.96998 * 120.00243 * 179.97438 * 19 18 16 41 41 H 1.08996 * 110.36244 * 94.48455 * 24 15 14 42 42 H 1.08997 * 110.36930 * 216.80538 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3332 1.1816 5 7 3.7670 2.6022 1.1819 6 6 3.8479 3.4831 2.1992 7 6 4.6266 4.5182 1.7655 8 6 4.9863 5.7145 2.5501 9 8 4.5801 5.8390 3.6894 10 7 5.7660 6.6689 2.0046 11 6 6.1237 7.8566 2.7840 12 1 5.3307 8.1140 3.4862 13 6 6.4530 9.0539 1.8538 14 6 7.4118 9.9053 2.7125 15 7 7.9991 9.0148 3.7242 16 6 8.8886 9.3880 4.6961 17 1 9.2637 8.6551 5.3950 18 6 9.3082 10.7084 4.7830 19 7 8.8506 11.6017 3.9316 20 14 10.5211 11.2176 6.1093 21 1 11.7822 10.4503 5.9476 22 1 10.8058 12.6700 5.9884 23 1 9.9391 10.9373 7.4464 24 6 7.4766 7.6522 3.5151 25 7 5.0048 4.2652 0.5008 26 7 4.5177 3.1344 0.1240 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3585 2.1317 0.0895 31 1 2.6213 1.4026 -0.9314 32 1 3.7399 0.5067 1.0921 33 1 2.4772 1.2358 2.1130 34 1 3.3859 3.3885 3.1708 35 1 6.0904 6.5693 1.0958 36 1 5.5500 9.6148 1.6128 37 1 6.9485 8.7142 0.9443 38 1 6.8585 10.7075 3.2011 39 1 8.1991 10.3259 2.0869 40 1 9.1435 12.5244 3.9925 41 1 8.1619 7.0742 2.8952 42 1 7.3188 7.1554 4.4723 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015817577.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:06 Heat of formation + Delta-G solvation = 107.408982 kcal Electronic energy + Delta-G solvation = -23788.773891 eV Core-core repulsion = 20193.490322 eV Total energy + Delta-G solvation = -3595.283569 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.38625 -39.33088 -37.15569 -36.82965 -34.27083 -33.84410 -31.88654 -31.15277 -29.79932 -29.02802 -27.07552 -25.05179 -24.61370 -23.37772 -22.07326 -20.64771 -20.43517 -20.26730 -19.83046 -18.15399 -16.91445 -16.43741 -16.40045 -16.02390 -15.70664 -14.93957 -14.91981 -14.58089 -14.24301 -14.08047 -13.90767 -13.52198 -13.21439 -12.79724 -12.39457 -12.35362 -12.17425 -12.07107 -11.74646 -11.73996 -11.42303 -10.96637 -10.86603 -10.69890 -10.65595 -10.34926 -10.09840 -9.99565 -9.87025 -9.83264 -9.64594 -9.45782 -8.67489 -8.53704 -6.78457 -5.66133 -2.99538 0.92632 1.54526 1.64535 1.83153 3.30118 3.39294 3.45752 3.49423 3.51021 3.91595 4.05114 4.14929 4.34817 4.54631 4.58736 4.63284 4.66229 4.81042 4.94624 5.16775 5.31393 5.35344 5.37142 5.49471 5.60323 5.71311 5.81789 5.85890 5.98709 6.06798 6.12449 6.25302 6.40034 6.50000 6.64459 6.74492 7.02583 7.58742 7.62555 7.64416 7.84537 7.89822 8.29713 8.38590 9.27022 9.86972 10.52323 11.45682 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.045988 B = 0.002192 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.714875 B =12768.584309 C =12981.324008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C -0.107 4.107 4 C 0.127 3.873 5 N -0.364 5.364 6 C 0.092 3.908 7 C -0.095 4.095 8 C 0.601 3.399 9 O -0.540 6.540 10 N -0.699 5.699 11 C 0.127 3.873 12 H 0.099 0.901 13 C -0.150 4.150 14 C 0.179 3.821 15 N -0.604 5.604 16 C -0.226 4.226 17 H 0.078 0.922 18 C -0.009 4.009 19 N -0.924 5.924 20 Si 0.913 3.087 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.129 3.871 25 N -0.203 5.203 26 N -0.066 5.066 27 H 0.098 0.902 28 H 0.102 0.898 29 H 0.115 0.885 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.205 0.795 35 H 0.405 0.595 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.050 0.950 39 H 0.046 0.954 40 H 0.253 0.747 41 H 0.021 0.979 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.318 -22.622 -8.662 29.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.178 4.178 3 C -0.145 4.145 4 C 0.006 3.994 5 N -0.149 5.149 6 C -0.065 4.065 7 C -0.235 4.235 8 C 0.384 3.616 9 O -0.416 6.416 10 N -0.348 5.348 11 C 0.022 3.978 12 H 0.117 0.883 13 C -0.189 4.189 14 C 0.054 3.946 15 N -0.331 5.331 16 C -0.354 4.354 17 H 0.096 0.904 18 C -0.205 4.205 19 N -0.571 5.571 20 Si 0.744 3.256 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.002 3.998 25 N -0.077 5.077 26 N -0.046 5.046 27 H 0.116 0.884 28 H 0.120 0.880 29 H 0.133 0.867 30 H 0.095 0.905 31 H 0.110 0.890 32 H 0.119 0.881 33 H 0.125 0.875 34 H 0.222 0.778 35 H 0.241 0.759 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.039 0.961 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -16.027 -22.541 -9.199 29.148 hybrid contribution 0.388 0.171 1.193 1.266 sum -15.640 -22.369 -8.006 28.444 Atomic orbital electron populations 1.23972 0.95895 1.02340 0.99452 1.22739 0.96016 0.97642 1.01383 1.21030 0.98018 0.96784 0.98636 1.22021 0.94459 0.81415 1.01539 1.50534 1.35932 1.17462 1.10993 1.23402 0.98394 0.89337 0.95339 1.21607 1.08141 1.00363 0.93343 1.16761 0.78667 0.80983 0.85194 1.90820 1.55283 1.78120 1.17371 1.45818 1.50249 1.20675 1.18068 1.22424 0.98313 0.83221 0.93828 0.88263 1.23187 1.00598 0.96597 0.98488 1.21153 0.93283 0.90996 0.89168 1.44382 1.51286 1.02592 1.34809 1.19029 1.16687 0.93464 1.06263 0.90439 1.24802 1.00545 0.95911 0.99260 1.69938 1.47126 1.02187 1.37884 0.86174 0.80857 0.77322 0.81255 1.21214 1.21615 1.21164 1.21869 0.91453 0.89046 0.97465 1.74651 1.15223 1.07506 1.10347 1.81956 1.09314 1.04898 1.08480 0.88360 0.87991 0.86693 0.90523 0.89006 0.88142 0.87533 0.77846 0.75940 0.91551 0.91861 0.93219 0.93537 0.93714 0.96118 0.93833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.67 14.32 29.01 0.42 -0.25 16 2 C -0.16 -0.58 9.52 -36.02 -0.34 -0.93 16 3 C -0.11 -0.50 5.86 -27.88 -0.16 -0.66 16 4 C 0.13 0.57 6.52 -4.04 -0.03 0.54 16 5 N -0.36 -3.18 3.69 -61.06 -0.23 -3.40 16 6 C 0.09 0.90 11.27 -16.84 -0.19 0.71 16 7 C -0.10 -1.26 6.99 -83.55 -0.58 -1.85 16 8 C 0.60 9.60 7.82 -12.48 -0.10 9.50 16 9 O -0.54 -10.06 16.50 5.28 0.09 -9.97 16 10 N -0.70 -11.14 5.19 -52.66 -0.27 -11.41 16 11 C 0.13 2.39 3.44 -65.67 -0.23 2.17 16 12 H 0.10 2.01 7.54 -51.93 -0.39 1.62 16 13 C -0.15 -2.80 6.59 -24.90 -0.16 -2.97 16 14 C 0.18 4.39 5.38 -3.07 -0.02 4.37 16 15 N -0.60 -15.92 3.39 -169.94 -0.58 -16.50 16 16 C -0.23 -6.49 10.28 -15.06 -0.15 -6.64 16 17 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 18 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 19 N -0.92 -27.45 10.31 55.49 0.57 -26.88 16 20 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 C 0.13 2.86 6.93 -2.41 -0.02 2.84 16 25 N -0.20 -2.77 12.04 32.85 0.40 -2.38 16 26 N -0.07 -0.79 13.65 60.35 0.82 0.03 16 27 H 0.10 0.37 7.84 -52.49 -0.41 -0.05 16 28 H 0.10 0.29 8.06 -52.49 -0.42 -0.14 16 29 H 0.12 0.30 8.06 -52.49 -0.42 -0.13 16 30 H 0.08 0.40 7.79 -51.93 -0.40 0.00 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.11 0.23 8.08 -51.93 -0.42 -0.19 16 34 H 0.20 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.41 5.79 8.26 -40.82 -0.34 5.45 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.06 1.08 8.01 -51.93 -0.42 0.66 16 38 H 0.05 1.34 7.38 -51.92 -0.38 0.95 16 39 H 0.05 1.25 7.50 -51.93 -0.39 0.86 16 40 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 359.47 15.07 5.42 5.42 Total: -1.00 -34.37 359.47 -6.55 -40.92 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -6.08 Total: 0.17 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: -1.66 Total: 6.48 kcal Atomic # 7 Polarization: -61.26 SS G_CDS: 0.72 Total: -60.55 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.09 Total: -9.97 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.37 -6.55 -40.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015817577.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.330 kcal (2) G-P(sol) polarization free energy of solvation -34.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds