Wall clock time and date at job start Tue Mar 31 2020 08:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50707 * 119.99790 * 2 1 4 4 C 1.52992 * 109.47014 * 124.99980 * 3 2 1 5 5 N 1.46505 * 109.46877 * 180.02562 * 4 3 2 6 6 C 1.34811 * 126.59469 * 125.00202 * 5 4 3 7 7 C 1.36597 * 106.84053 * 180.02562 * 6 5 4 8 8 C 1.47519 * 125.77490 * 179.97438 * 7 6 5 9 9 O 1.21596 * 119.99952 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00369 * 179.97438 * 8 7 6 11 11 C 1.46492 * 120.00118 * 180.02562 * 10 8 7 12 12 H 1.09000 * 110.89195 * 328.88628 * 11 10 8 13 13 C 1.55159 * 111.00591 * 205.00380 * 11 10 8 14 14 C 1.54320 * 102.94349 * 206.42744 * 13 11 10 15 15 N 1.47018 * 107.27210 * 22.19183 * 14 13 11 16 16 C 1.36945 * 125.64695 * 181.02594 * 15 14 13 17 17 H 1.08000 * 119.99441 * 180.02562 * 16 15 14 18 18 C 1.38811 * 120.00031 * 0.02562 * 16 15 14 19 19 N 1.31619 * 120.00283 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99811 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46677 * 60.00366 * 20 18 16 22 22 H 1.48501 * 109.47050 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47416 * 300.00359 * 20 18 16 24 24 C 1.47421 * 108.70379 * 1.28563 * 15 14 13 25 25 N 1.34403 * 108.45600 * 0.23557 * 7 6 5 26 26 N 1.28763 * 109.52445 * 359.59031 * 25 7 6 27 27 H 1.07996 * 120.00049 * 0.02562 * 1 2 3 28 28 H 1.07999 * 119.99914 * 180.02562 * 1 2 3 29 29 H 1.07996 * 120.00049 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47163 * 4.99394 * 3 2 1 31 31 H 1.09000 * 109.46378 * 244.99835 * 3 2 1 32 32 H 1.08998 * 109.47634 * 59.99703 * 4 3 2 33 33 H 1.09000 * 109.47429 * 299.99211 * 4 3 2 34 34 H 1.07998 * 126.58202 * 0.02562 * 6 5 4 35 35 H 0.97006 * 119.99512 * 0.02562 * 10 8 7 36 36 H 1.08996 * 110.71852 * 88.06245 * 13 11 10 37 37 H 1.08998 * 110.86977 * 324.86115 * 13 11 10 38 38 H 1.09010 * 109.88205 * 262.77471 * 14 13 11 39 39 H 1.09004 * 110.01290 * 141.68524 * 14 13 11 40 40 H 0.96998 * 120.00243 * 179.97438 * 19 18 16 41 41 H 1.08996 * 110.36244 * 94.48455 * 24 15 14 42 42 H 1.08997 * 110.36930 * 216.80538 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3332 1.1816 5 7 3.7670 2.6022 1.1819 6 6 3.8479 3.4831 2.1992 7 6 4.6266 4.5182 1.7655 8 6 4.9863 5.7145 2.5501 9 8 4.5801 5.8390 3.6894 10 7 5.7660 6.6689 2.0046 11 6 6.1237 7.8566 2.7840 12 1 5.3307 8.1140 3.4862 13 6 6.4530 9.0539 1.8538 14 6 7.4118 9.9053 2.7125 15 7 7.9991 9.0148 3.7242 16 6 8.8886 9.3880 4.6961 17 1 9.2637 8.6551 5.3950 18 6 9.3082 10.7084 4.7830 19 7 8.8506 11.6017 3.9316 20 14 10.5211 11.2176 6.1093 21 1 11.7822 10.4503 5.9476 22 1 10.8058 12.6700 5.9884 23 1 9.9391 10.9373 7.4464 24 6 7.4766 7.6522 3.5151 25 7 5.0048 4.2652 0.5008 26 7 4.5177 3.1344 0.1240 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3585 2.1317 0.0895 31 1 2.6213 1.4026 -0.9314 32 1 3.7399 0.5067 1.0921 33 1 2.4772 1.2358 2.1130 34 1 3.3859 3.3885 3.1708 35 1 6.0904 6.5693 1.0958 36 1 5.5500 9.6148 1.6128 37 1 6.9485 8.7142 0.9443 38 1 6.8585 10.7075 3.2011 39 1 8.1991 10.3259 2.0869 40 1 9.1435 12.5244 3.9925 41 1 8.1619 7.0742 2.8952 42 1 7.3188 7.1554 4.4723 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015817577.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:05 Heat of formation + Delta-G solvation = 83.182283 kcal Electronic energy + Delta-G solvation = -23789.824440 eV Core-core repulsion = 20193.490322 eV Total energy + Delta-G solvation = -3596.334117 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.24283 -40.69494 -38.83389 -37.30794 -35.64775 -34.71885 -33.72117 -32.09234 -31.02769 -30.27593 -28.77588 -26.56043 -25.55477 -24.61157 -22.79795 -22.15748 -21.87223 -21.30250 -20.74518 -19.27665 -18.73556 -17.49749 -17.19331 -17.15817 -16.67088 -16.24955 -16.06779 -15.77650 -15.61632 -15.46570 -14.93486 -14.53669 -14.15485 -13.97381 -13.92085 -13.67854 -13.66149 -13.12561 -12.95026 -12.73372 -12.66281 -12.40170 -12.19912 -12.10380 -12.06696 -12.01479 -11.79641 -11.57832 -11.32404 -11.22138 -10.69828 -10.43322 -10.27481 -10.05187 -8.90871 -7.84552 -5.20986 0.14183 0.60636 1.03492 1.41994 1.46688 1.50601 1.56799 2.06072 2.22828 2.51740 3.16084 3.33549 3.36851 3.68505 3.74660 3.80250 3.90480 3.98303 4.05846 4.06080 4.21379 4.23684 4.37997 4.41235 4.57844 4.64326 4.72524 4.83957 4.88601 4.98312 4.99419 5.07787 5.08712 5.43407 5.44261 5.49885 5.65024 5.73664 5.74788 5.83822 6.19577 6.44036 6.90303 7.09949 7.14228 7.75694 8.39639 9.25406 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.045988 B = 0.002192 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.714875 B =12768.584309 C =12981.324008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.158 4.158 3 C -0.102 4.102 4 C 0.118 3.882 5 N -0.348 5.348 6 C 0.113 3.887 7 C -0.122 4.122 8 C 0.604 3.396 9 O -0.570 6.570 10 N -0.693 5.693 11 C 0.147 3.853 12 H 0.086 0.914 13 C -0.130 4.130 14 C 0.185 3.815 15 N -0.625 5.625 16 C -0.248 4.248 17 H 0.079 0.921 18 C -0.064 4.064 19 N -0.949 5.949 20 Si 0.982 3.018 21 H -0.277 1.277 22 H -0.291 1.291 23 H -0.278 1.278 24 C 0.128 3.872 25 N -0.224 5.224 26 N -0.083 5.083 27 H 0.095 0.905 28 H 0.111 0.889 29 H 0.129 0.871 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.118 0.882 33 H 0.138 0.862 34 H 0.237 0.763 35 H 0.416 0.584 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.017 0.983 39 H 0.016 0.984 40 H 0.249 0.751 41 H 0.028 0.972 42 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.309 -24.925 -8.658 31.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.177 4.177 3 C -0.140 4.140 4 C -0.001 4.001 5 N -0.133 5.133 6 C -0.045 4.045 7 C -0.262 4.262 8 C 0.390 3.610 9 O -0.448 6.448 10 N -0.343 5.343 11 C 0.041 3.959 12 H 0.104 0.896 13 C -0.169 4.169 14 C 0.060 3.940 15 N -0.352 5.352 16 C -0.376 4.376 17 H 0.097 0.903 18 C -0.257 4.257 19 N -0.598 5.598 20 Si 0.809 3.191 21 H -0.203 1.203 22 H -0.217 1.217 23 H -0.204 1.204 24 C 0.002 3.998 25 N -0.097 5.097 26 N -0.064 5.064 27 H 0.113 0.887 28 H 0.129 0.871 29 H 0.146 0.854 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.136 0.864 33 H 0.156 0.844 34 H 0.253 0.747 35 H 0.253 0.747 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.035 0.965 39 H 0.035 0.965 40 H 0.058 0.942 41 H 0.046 0.954 42 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -17.036 -24.910 -9.242 31.562 hybrid contribution 0.620 0.745 1.177 1.525 sum -16.416 -24.165 -8.065 30.306 Atomic orbital electron populations 1.24101 0.96108 1.02715 0.99312 1.22764 0.95954 0.97549 1.01430 1.20953 0.97771 0.97198 0.98103 1.22502 0.94767 0.79857 1.02979 1.50813 1.34654 1.18066 1.09765 1.23840 0.96498 0.87969 0.96238 1.21330 1.10584 1.00586 0.93692 1.17049 0.77722 0.81343 0.84920 1.90801 1.56365 1.78887 1.18758 1.45620 1.50492 1.19932 1.18206 1.21941 0.95999 0.84392 0.93574 0.89560 1.23008 1.00248 0.95639 0.98004 1.20939 0.93022 0.91212 0.88854 1.44666 1.51239 1.04493 1.34804 1.19405 1.17331 0.93911 1.06988 0.90308 1.25670 1.02525 0.95926 1.01604 1.70156 1.48173 1.02093 1.39333 0.85115 0.78710 0.76629 0.78627 1.20293 1.21701 1.20395 1.21967 0.93232 0.87148 0.97492 1.74623 1.16061 1.08386 1.10649 1.81883 1.10089 1.04674 1.09709 0.88698 0.87062 0.85353 0.91310 0.90437 0.86395 0.84369 0.74711 0.74740 0.89125 0.89546 0.96486 0.96540 0.94216 0.95449 0.94967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.02 14.32 67.78 0.97 -0.05 16 2 C -0.16 -0.79 9.52 25.65 0.24 -0.54 16 3 C -0.10 -0.74 5.86 29.85 0.17 -0.56 16 4 C 0.12 0.67 6.52 86.38 0.56 1.23 16 5 N -0.35 -5.18 3.69 -347.10 -1.28 -6.46 16 6 C 0.11 1.91 11.27 83.85 0.95 2.86 16 7 C -0.12 -3.06 6.99 40.81 0.29 -2.77 16 8 C 0.60 18.70 7.82 86.69 0.68 19.38 16 9 O -0.57 -20.80 16.50 -4.02 -0.07 -20.87 16 10 N -0.69 -21.35 5.19 -438.77 -2.28 -23.63 16 11 C 0.15 5.47 3.44 46.46 0.16 5.63 16 12 H 0.09 3.49 7.54 -2.39 -0.02 3.47 16 13 C -0.13 -4.77 6.59 31.78 0.21 -4.56 16 14 C 0.18 9.29 5.38 86.73 0.47 9.76 16 15 N -0.63 -33.68 3.39 -691.56 -2.35 -36.03 16 16 C -0.25 -14.48 10.28 84.03 0.86 -13.62 16 17 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 18 C -0.06 -3.75 5.49 84.86 0.47 -3.28 16 19 N -0.95 -57.92 10.31 21.65 0.22 -57.70 16 20 Si 0.98 46.89 29.55 68.60 2.03 48.92 16 21 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 22 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 23 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 24 C 0.13 5.72 6.93 86.93 0.60 6.32 16 25 N -0.22 -5.83 12.04 -50.00 -0.60 -6.43 16 26 N -0.08 -1.87 13.65 37.02 0.51 -1.36 16 27 H 0.09 0.57 7.84 -2.91 -0.02 0.55 16 28 H 0.11 0.40 8.06 -2.91 -0.02 0.37 16 29 H 0.13 0.30 8.06 -2.91 -0.02 0.27 16 30 H 0.07 0.61 7.79 -2.39 -0.02 0.59 16 31 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.14 -0.01 8.08 -2.39 -0.02 -0.03 16 34 H 0.24 2.33 8.06 -2.91 -0.02 2.31 16 35 H 0.42 11.28 8.26 -92.70 -0.77 10.52 16 36 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 37 H 0.09 2.78 8.01 -2.39 -0.02 2.76 16 38 H 0.02 0.95 7.38 -2.38 -0.02 0.93 16 39 H 0.02 0.91 7.50 -2.38 -0.02 0.89 16 40 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 41 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -76.47 359.47 3.07 -73.40 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: 0.26 Total: 10.35 kcal Atomic # 6 Polarization: 13.18 SS G_CDS: 6.63 Total: 19.81 kcal Atomic # 7 Polarization: -125.83 SS G_CDS: -5.78 Total: -131.61 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.07 Total: -20.87 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -76.47 3.07 -73.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015817577.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.584 kcal (2) G-P(sol) polarization free energy of solvation -76.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds