Wall clock time and date at job start Tue Mar 31 2020 08:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 119.99650 * 2 1 4 4 C 1.53007 * 109.47104 * 125.00593 * 3 2 1 5 5 N 1.46494 * 109.47060 * 180.02562 * 4 3 2 6 6 C 1.34813 * 126.59932 * 125.00005 * 5 4 3 7 7 C 1.36591 * 106.84298 * 180.23722 * 6 5 4 8 8 C 1.47525 * 125.76871 * 179.71386 * 7 6 5 9 9 O 1.21591 * 120.00050 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99807 * 179.97438 * 8 7 6 11 11 C 1.46494 * 119.99955 * 179.97438 * 10 8 7 12 12 H 1.08997 * 110.88806 * 31.12065 * 11 10 8 13 13 C 1.55156 * 111.00529 * 154.99947 * 11 10 8 14 14 C 1.54326 * 102.94251 * 153.57349 * 13 11 10 15 15 N 1.47016 * 107.27144 * 337.81079 * 14 13 11 16 16 C 1.36945 * 125.64813 * 178.89232 * 15 14 13 17 17 H 1.07999 * 119.99840 * 174.87722 * 16 15 14 18 18 C 1.38807 * 119.99837 * 354.88486 * 16 15 14 19 19 N 1.31627 * 120.00274 * 7.06133 * 18 16 15 20 20 Si 1.86802 * 120.00059 * 187.06450 * 18 16 15 21 21 H 1.48504 * 109.47161 * 94.98597 * 20 18 16 22 22 H 1.48506 * 109.47110 * 214.98569 * 20 18 16 23 23 H 1.48496 * 109.46865 * 334.98323 * 20 18 16 24 24 C 1.47425 * 108.70665 * 358.93579 * 15 14 13 25 25 N 1.34400 * 108.45943 * 359.56708 * 7 6 5 26 26 N 1.28764 * 109.52094 * 0.44442 * 25 7 6 27 27 H 1.08003 * 119.99841 * 180.02562 * 1 2 3 28 28 H 1.07998 * 120.00192 * 359.97438 * 1 2 3 29 29 H 1.07997 * 119.99984 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.47564 * 5.00467 * 3 2 1 31 31 H 1.09007 * 109.47042 * 244.99717 * 3 2 1 32 32 H 1.08996 * 109.47013 * 59.99537 * 4 3 2 33 33 H 1.08998 * 109.46387 * 299.99472 * 4 3 2 34 34 H 1.08001 * 126.57718 * 359.97438 * 6 5 4 35 35 H 0.97005 * 120.00009 * 359.97438 * 10 8 7 36 36 H 1.08992 * 110.72258 * 271.93974 * 13 11 10 37 37 H 1.09007 * 110.71690 * 35.21553 * 13 11 10 38 38 H 1.08995 * 109.87991 * 97.22791 * 14 13 11 39 39 H 1.09005 * 109.88369 * 218.39104 * 14 13 11 40 40 H 0.96996 * 120.00136 * 180.02562 * 19 18 16 41 41 H 1.08990 * 110.36651 * 265.29490 * 24 15 14 42 42 H 1.09001 * 110.36815 * 142.96416 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 7 3.7671 2.6021 1.1819 6 6 3.8481 3.4830 2.1993 7 6 4.6228 4.5203 1.7638 8 6 4.9766 5.7199 2.5462 9 8 4.5680 5.8458 3.6844 10 7 5.7528 6.6764 1.9992 11 6 6.1037 7.8679 2.7758 12 1 6.1669 7.6344 3.8386 13 6 7.4277 8.4950 2.2646 14 6 7.2811 9.9801 2.6578 15 7 5.8447 10.2498 2.8170 16 6 5.2935 11.4487 3.1836 17 1 4.2204 11.5692 3.1931 18 6 6.1143 12.5089 3.5428 19 7 7.4189 12.4095 3.3989 20 14 5.3674 14.0770 4.2304 21 1 5.3836 14.0236 5.7144 22 1 6.1582 15.2460 3.7684 23 1 3.9667 14.2078 3.7550 24 6 5.0959 9.0157 2.5176 25 7 5.0107 4.2618 0.5033 26 7 4.5186 3.1338 0.1244 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1317 0.0896 31 1 2.6213 1.4026 -0.9314 32 1 3.7400 0.5066 1.0920 33 1 2.4773 1.2356 2.1129 34 1 3.3854 3.3887 3.1706 35 1 6.0791 6.5758 1.0912 36 1 8.2855 8.0463 2.7654 37 1 7.5122 8.3890 1.1830 38 1 7.7999 10.1676 3.5979 39 1 7.6925 10.6140 1.8722 40 1 7.9924 13.1502 3.6503 41 1 4.7738 9.0106 1.4764 42 1 4.2367 8.9227 3.1819 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015817578.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:08 Heat of formation + Delta-G solvation = 107.181397 kcal Electronic energy + Delta-G solvation = -23811.984468 eV Core-core repulsion = 20216.691030 eV Total energy + Delta-G solvation = -3595.293438 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.38661 -39.33523 -37.16318 -36.82392 -34.26832 -33.84445 -31.89323 -31.15292 -29.79617 -29.03223 -27.09297 -25.04853 -24.61670 -23.37915 -22.07275 -20.64583 -20.42830 -20.27192 -19.82905 -18.15406 -16.92015 -16.45347 -16.37682 -16.02151 -15.69926 -15.03013 -14.78646 -14.59971 -14.33710 -14.02534 -13.89888 -13.51711 -13.21976 -12.79460 -12.39131 -12.36041 -12.18038 -12.06508 -11.74661 -11.72976 -11.43279 -10.95940 -10.89219 -10.71441 -10.65339 -10.35211 -10.06145 -9.98542 -9.87301 -9.83721 -9.66469 -9.45813 -8.67271 -8.52590 -6.78659 -5.68137 -3.00237 0.92567 1.55498 1.64341 1.83546 3.29925 3.39257 3.44977 3.50064 3.51862 3.91791 4.05358 4.15373 4.35807 4.54311 4.59382 4.63341 4.66260 4.81053 4.95192 5.17628 5.32078 5.35883 5.37997 5.49039 5.58812 5.70343 5.82512 5.86315 5.99781 6.07293 6.13257 6.25015 6.39828 6.49814 6.63913 6.74412 7.02321 7.57128 7.62811 7.65145 7.84250 7.89582 8.28902 8.38460 9.26078 9.86263 10.51977 11.44146 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.031873 B = 0.002290 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.264524 B =12221.860302 C =12677.604051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C -0.107 4.107 4 C 0.127 3.873 5 N -0.364 5.364 6 C 0.092 3.908 7 C -0.095 4.095 8 C 0.601 3.399 9 O -0.539 6.539 10 N -0.699 5.699 11 C 0.127 3.873 12 H 0.099 0.901 13 C -0.150 4.150 14 C 0.178 3.822 15 N -0.604 5.604 16 C -0.226 4.226 17 H 0.078 0.922 18 C -0.008 4.008 19 N -0.921 5.921 20 Si 0.911 3.089 21 H -0.289 1.289 22 H -0.292 1.292 23 H -0.281 1.281 24 C 0.129 3.871 25 N -0.203 5.203 26 N -0.066 5.066 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.115 0.885 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.205 0.795 35 H 0.405 0.595 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.051 0.949 39 H 0.045 0.955 40 H 0.252 0.748 41 H 0.021 0.979 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.929 -26.882 -5.664 28.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.178 4.178 3 C -0.145 4.145 4 C 0.006 3.994 5 N -0.149 5.149 6 C -0.065 4.065 7 C -0.235 4.235 8 C 0.384 3.616 9 O -0.416 6.416 10 N -0.348 5.348 11 C 0.022 3.978 12 H 0.117 0.883 13 C -0.188 4.188 14 C 0.053 3.947 15 N -0.331 5.331 16 C -0.354 4.354 17 H 0.096 0.904 18 C -0.205 4.205 19 N -0.569 5.569 20 Si 0.742 3.258 21 H -0.216 1.216 22 H -0.218 1.218 23 H -0.206 1.206 24 C 0.001 3.999 25 N -0.077 5.077 26 N -0.046 5.046 27 H 0.120 0.880 28 H 0.117 0.883 29 H 0.133 0.867 30 H 0.095 0.905 31 H 0.110 0.890 32 H 0.118 0.882 33 H 0.125 0.875 34 H 0.222 0.778 35 H 0.241 0.759 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.038 0.962 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -8.666 -26.796 -6.212 28.839 hybrid contribution -0.629 0.730 0.867 1.296 sum -9.296 -26.066 -5.345 28.185 Atomic orbital electron populations 1.23979 0.95903 1.02362 0.99374 1.22732 0.96014 0.97615 1.01457 1.21035 0.98038 0.96817 0.98612 1.22020 0.94451 0.81374 1.01569 1.50534 1.36010 1.17477 1.10901 1.23402 0.98447 0.89250 0.95374 1.21607 1.08192 1.00163 0.93494 1.16762 0.78708 0.80912 0.85220 1.90819 1.54421 1.78728 1.17608 1.45819 1.50656 1.20050 1.18288 1.22378 0.96098 0.83080 0.96247 0.88285 1.23190 0.95621 0.99734 1.00305 1.21163 0.85599 0.87553 1.00359 1.44393 1.01593 1.06148 1.80943 1.19072 0.91564 0.87237 1.37562 0.90366 1.24826 0.95553 0.98472 1.01612 1.69966 1.02159 1.31698 1.53038 0.86100 0.78008 0.82694 0.78998 1.21608 1.21816 1.20649 1.21836 0.94193 0.86166 0.97661 1.74651 1.15268 1.07478 1.10331 1.81957 1.09119 1.05135 1.08438 0.87995 0.88328 0.86713 0.90478 0.89008 0.88174 0.87538 0.77846 0.75943 0.91512 0.91862 0.93064 0.93720 0.93758 0.96173 0.93777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.70 14.32 29.01 0.42 -0.29 16 2 C -0.16 -0.60 9.52 -36.03 -0.34 -0.95 16 3 C -0.11 -0.52 5.86 -27.88 -0.16 -0.68 16 4 C 0.13 0.57 6.52 -4.04 -0.03 0.54 16 5 N -0.36 -3.18 3.69 -61.06 -0.23 -3.40 16 6 C 0.09 0.90 11.27 -16.84 -0.19 0.71 16 7 C -0.10 -1.26 6.99 -83.55 -0.58 -1.85 16 8 C 0.60 9.60 7.82 -12.47 -0.10 9.50 16 9 O -0.54 -10.06 16.50 5.29 0.09 -9.97 16 10 N -0.70 -11.13 5.19 -52.77 -0.27 -11.40 16 11 C 0.13 2.39 3.42 -65.78 -0.23 2.17 16 12 H 0.10 2.01 7.54 -51.93 -0.39 1.62 16 13 C -0.15 -2.79 6.60 -24.90 -0.16 -2.96 16 14 C 0.18 4.37 5.38 -3.07 -0.02 4.35 16 15 N -0.60 -15.91 3.39 -170.08 -0.58 -16.49 16 16 C -0.23 -6.48 10.27 -15.06 -0.15 -6.64 16 17 H 0.08 2.18 7.84 -52.49 -0.41 1.77 16 18 C -0.01 -0.24 5.48 -17.43 -0.10 -0.34 16 19 N -0.92 -27.37 10.36 55.49 0.57 -26.79 16 20 Si 0.91 22.53 29.56 -169.99 -5.02 17.51 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 24 C 0.13 2.85 6.93 -2.53 -0.02 2.84 16 25 N -0.20 -2.77 12.04 32.85 0.40 -2.38 16 26 N -0.07 -0.79 13.65 60.35 0.82 0.03 16 27 H 0.10 0.30 8.06 -52.48 -0.42 -0.12 16 28 H 0.10 0.40 7.84 -52.49 -0.41 -0.02 16 29 H 0.11 0.30 8.06 -52.49 -0.42 -0.12 16 30 H 0.08 0.43 7.79 -51.93 -0.40 0.03 16 31 H 0.09 0.55 8.14 -51.92 -0.42 0.13 16 32 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.11 0.23 8.08 -51.93 -0.42 -0.19 16 34 H 0.20 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.41 5.78 8.25 -40.82 -0.34 5.44 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.06 1.07 8.00 -51.92 -0.42 0.66 16 38 H 0.05 1.38 7.30 -51.93 -0.38 1.00 16 39 H 0.04 1.19 7.61 -51.93 -0.40 0.80 16 40 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 359.53 15.07 5.42 5.42 Total: -1.00 -34.37 359.53 -6.55 -40.92 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -6.08 Total: 0.16 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: -1.66 Total: 6.41 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: 0.72 Total: -60.44 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.09 Total: -9.97 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.37 -6.55 -40.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015817578.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.103 kcal (2) G-P(sol) polarization free energy of solvation -34.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds