Wall clock time and date at job start Tue Mar 31 2020 08:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 119.99650 * 2 1 4 4 C 1.53007 * 109.47104 * 125.00593 * 3 2 1 5 5 N 1.46494 * 109.47060 * 180.02562 * 4 3 2 6 6 C 1.34813 * 126.59932 * 125.00005 * 5 4 3 7 7 C 1.36591 * 106.84298 * 180.23722 * 6 5 4 8 8 C 1.47525 * 125.76871 * 179.71386 * 7 6 5 9 9 O 1.21591 * 120.00050 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99807 * 179.97438 * 8 7 6 11 11 C 1.46494 * 119.99955 * 179.97438 * 10 8 7 12 12 H 1.08997 * 110.88806 * 31.12065 * 11 10 8 13 13 C 1.55156 * 111.00529 * 154.99947 * 11 10 8 14 14 C 1.54326 * 102.94251 * 153.57349 * 13 11 10 15 15 N 1.47016 * 107.27144 * 337.81079 * 14 13 11 16 16 C 1.36945 * 125.64813 * 178.89232 * 15 14 13 17 17 H 1.07999 * 119.99840 * 174.87722 * 16 15 14 18 18 C 1.38807 * 119.99837 * 354.88486 * 16 15 14 19 19 N 1.31627 * 120.00274 * 7.06133 * 18 16 15 20 20 Si 1.86802 * 120.00059 * 187.06450 * 18 16 15 21 21 H 1.48504 * 109.47161 * 94.98597 * 20 18 16 22 22 H 1.48506 * 109.47110 * 214.98569 * 20 18 16 23 23 H 1.48496 * 109.46865 * 334.98323 * 20 18 16 24 24 C 1.47425 * 108.70665 * 358.93579 * 15 14 13 25 25 N 1.34400 * 108.45943 * 359.56708 * 7 6 5 26 26 N 1.28764 * 109.52094 * 0.44442 * 25 7 6 27 27 H 1.08003 * 119.99841 * 180.02562 * 1 2 3 28 28 H 1.07998 * 120.00192 * 359.97438 * 1 2 3 29 29 H 1.07997 * 119.99984 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.47564 * 5.00467 * 3 2 1 31 31 H 1.09007 * 109.47042 * 244.99717 * 3 2 1 32 32 H 1.08996 * 109.47013 * 59.99537 * 4 3 2 33 33 H 1.08998 * 109.46387 * 299.99472 * 4 3 2 34 34 H 1.08001 * 126.57718 * 359.97438 * 6 5 4 35 35 H 0.97005 * 120.00009 * 359.97438 * 10 8 7 36 36 H 1.08992 * 110.72258 * 271.93974 * 13 11 10 37 37 H 1.09007 * 110.71690 * 35.21553 * 13 11 10 38 38 H 1.08995 * 109.87991 * 97.22791 * 14 13 11 39 39 H 1.09005 * 109.88369 * 218.39104 * 14 13 11 40 40 H 0.96996 * 120.00136 * 180.02562 * 19 18 16 41 41 H 1.08990 * 110.36651 * 265.29490 * 24 15 14 42 42 H 1.09001 * 110.36815 * 142.96416 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 7 3.7671 2.6021 1.1819 6 6 3.8481 3.4830 2.1993 7 6 4.6228 4.5203 1.7638 8 6 4.9766 5.7199 2.5462 9 8 4.5680 5.8458 3.6844 10 7 5.7528 6.6764 1.9992 11 6 6.1037 7.8679 2.7758 12 1 6.1669 7.6344 3.8386 13 6 7.4277 8.4950 2.2646 14 6 7.2811 9.9801 2.6578 15 7 5.8447 10.2498 2.8170 16 6 5.2935 11.4487 3.1836 17 1 4.2204 11.5692 3.1931 18 6 6.1143 12.5089 3.5428 19 7 7.4189 12.4095 3.3989 20 14 5.3674 14.0770 4.2304 21 1 5.3836 14.0236 5.7144 22 1 6.1582 15.2460 3.7684 23 1 3.9667 14.2078 3.7550 24 6 5.0959 9.0157 2.5176 25 7 5.0107 4.2618 0.5033 26 7 4.5186 3.1338 0.1244 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1317 0.0896 31 1 2.6213 1.4026 -0.9314 32 1 3.7400 0.5066 1.0920 33 1 2.4773 1.2356 2.1129 34 1 3.3854 3.3887 3.1706 35 1 6.0791 6.5758 1.0912 36 1 8.2855 8.0463 2.7654 37 1 7.5122 8.3890 1.1830 38 1 7.7999 10.1676 3.5979 39 1 7.6925 10.6140 1.8722 40 1 7.9924 13.1502 3.6503 41 1 4.7738 9.0106 1.4764 42 1 4.2367 8.9227 3.1819 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015817578.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:08 Heat of formation + Delta-G solvation = 82.936922 kcal Electronic energy + Delta-G solvation = -23813.035787 eV Core-core repulsion = 20216.691030 eV Total energy + Delta-G solvation = -3596.344757 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.24305 -40.69982 -38.84074 -37.30932 -35.65010 -34.72096 -33.72790 -32.09333 -31.03170 -30.27802 -28.79233 -26.56388 -25.55785 -24.61242 -22.79832 -22.16533 -21.87102 -21.30061 -20.74780 -19.27733 -18.74033 -17.49139 -17.19568 -17.15336 -16.68326 -16.25056 -16.10931 -15.70990 -15.64724 -15.48294 -14.92802 -14.53619 -14.16880 -14.00176 -13.92226 -13.67134 -13.65745 -13.12635 -12.94952 -12.78370 -12.64879 -12.42108 -12.20009 -12.11192 -12.01922 -12.01143 -11.81965 -11.57786 -11.32103 -11.22241 -10.68924 -10.43411 -10.27830 -10.05320 -8.91030 -7.86527 -5.21559 0.14117 0.60662 1.03545 1.41658 1.46410 1.49095 1.57731 2.05821 2.22847 2.51061 3.15971 3.32010 3.36942 3.68544 3.74360 3.79928 3.90081 3.98103 4.05708 4.06404 4.21744 4.23504 4.37826 4.41086 4.57634 4.64013 4.72613 4.83823 4.88644 4.98286 4.99271 5.07333 5.08264 5.42960 5.44308 5.50516 5.64495 5.73173 5.74240 5.83672 6.19013 6.43998 6.90281 7.09302 7.14162 7.74985 8.39340 9.24183 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.031873 B = 0.002290 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.264524 B =12221.860302 C =12677.604051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.157 4.157 3 C -0.103 4.103 4 C 0.118 3.882 5 N -0.349 5.349 6 C 0.113 3.887 7 C -0.122 4.122 8 C 0.604 3.396 9 O -0.569 6.569 10 N -0.692 5.692 11 C 0.147 3.853 12 H 0.086 0.914 13 C -0.130 4.130 14 C 0.184 3.816 15 N -0.625 5.625 16 C -0.246 4.246 17 H 0.079 0.921 18 C -0.063 4.063 19 N -0.947 5.947 20 Si 0.980 3.020 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.269 1.269 24 C 0.128 3.872 25 N -0.224 5.224 26 N -0.083 5.083 27 H 0.112 0.888 28 H 0.093 0.907 29 H 0.130 0.870 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.120 0.880 33 H 0.138 0.862 34 H 0.237 0.763 35 H 0.416 0.584 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.019 0.981 39 H 0.015 0.985 40 H 0.249 0.751 41 H 0.027 0.973 42 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.010 -29.180 -5.647 31.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.176 4.176 3 C -0.141 4.141 4 C -0.001 4.001 5 N -0.133 5.133 6 C -0.045 4.045 7 C -0.262 4.262 8 C 0.390 3.610 9 O -0.448 6.448 10 N -0.342 5.342 11 C 0.041 3.959 12 H 0.104 0.896 13 C -0.169 4.169 14 C 0.059 3.941 15 N -0.352 5.352 16 C -0.375 4.375 17 H 0.097 0.903 18 C -0.257 4.257 19 N -0.596 5.596 20 Si 0.808 3.192 21 H -0.213 1.213 22 H -0.218 1.218 23 H -0.194 1.194 24 C 0.001 3.999 25 N -0.097 5.097 26 N -0.063 5.063 27 H 0.130 0.870 28 H 0.112 0.888 29 H 0.148 0.852 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.138 0.862 33 H 0.156 0.844 34 H 0.253 0.747 35 H 0.253 0.747 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.037 0.963 39 H 0.033 0.967 40 H 0.058 0.942 41 H 0.045 0.955 42 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -9.768 -29.156 -6.244 31.377 hybrid contribution -0.393 1.322 0.826 1.608 sum -10.161 -27.834 -5.418 30.122 Atomic orbital electron populations 1.24103 0.96158 1.02683 0.99385 1.22764 0.95917 0.97552 1.01363 1.20963 0.97802 0.97182 0.98185 1.22500 0.94771 0.79881 1.02902 1.50812 1.34738 1.18081 1.09669 1.23839 0.96550 0.87881 0.96278 1.21329 1.10630 1.00382 0.93850 1.17050 0.77705 0.81330 0.84950 1.90800 1.55485 1.79517 1.18993 1.45620 1.50982 1.19137 1.18511 1.21894 0.94892 0.83162 0.95975 0.89591 1.23013 0.96400 0.95453 1.02001 1.20950 0.84434 0.90942 0.97793 1.44676 1.02790 1.06847 1.80902 1.19424 0.91895 0.88552 1.37654 0.90322 1.25683 0.96097 1.01765 1.02134 1.70172 1.03262 1.32387 1.53733 0.85044 0.77663 0.78525 0.77994 1.21348 1.21819 1.19379 1.21932 0.94408 0.86047 0.97482 1.74623 1.16119 1.08351 1.10624 1.81883 1.09893 1.04918 1.09656 0.87014 0.88833 0.85206 0.91496 0.90422 0.86214 0.84390 0.74714 0.74737 0.89078 0.89534 0.96300 0.96710 0.94190 0.95501 0.94930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.12 14.32 67.78 0.97 -0.14 16 2 C -0.16 -0.82 9.52 25.64 0.24 -0.58 16 3 C -0.10 -0.78 5.86 29.85 0.17 -0.61 16 4 C 0.12 0.67 6.52 86.38 0.56 1.23 16 5 N -0.35 -5.17 3.69 -347.11 -1.28 -6.45 16 6 C 0.11 1.91 11.27 83.85 0.95 2.85 16 7 C -0.12 -3.06 6.99 40.82 0.29 -2.77 16 8 C 0.60 18.69 7.82 86.69 0.68 19.37 16 9 O -0.57 -20.79 16.50 -4.00 -0.07 -20.86 16 10 N -0.69 -21.33 5.19 -439.12 -2.28 -23.61 16 11 C 0.15 5.46 3.42 46.39 0.16 5.62 16 12 H 0.09 3.48 7.54 -2.39 -0.02 3.46 16 13 C -0.13 -4.74 6.60 31.78 0.21 -4.53 16 14 C 0.18 9.24 5.38 86.73 0.47 9.70 16 15 N -0.63 -33.67 3.39 -692.00 -2.35 -36.02 16 16 C -0.25 -14.41 10.27 84.03 0.86 -13.55 16 17 H 0.08 4.45 7.84 -2.91 -0.02 4.43 16 18 C -0.06 -3.71 5.48 84.86 0.46 -3.25 16 19 N -0.95 -57.80 10.36 21.65 0.22 -57.57 16 20 Si 0.98 46.92 29.56 68.60 2.03 48.95 16 21 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 22 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 23 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 24 C 0.13 5.71 6.93 86.86 0.60 6.31 16 25 N -0.22 -5.82 12.04 -50.00 -0.60 -6.42 16 26 N -0.08 -1.86 13.65 37.02 0.51 -1.36 16 27 H 0.11 0.44 8.06 -2.91 -0.02 0.42 16 28 H 0.09 0.64 7.84 -2.91 -0.02 0.61 16 29 H 0.13 0.29 8.06 -2.91 -0.02 0.27 16 30 H 0.07 0.65 7.79 -2.39 -0.02 0.63 16 31 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.14 -0.01 8.08 -2.39 -0.02 -0.02 16 34 H 0.24 2.33 8.06 -2.91 -0.02 2.31 16 35 H 0.42 11.26 8.25 -92.70 -0.77 10.50 16 36 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 37 H 0.09 2.78 8.00 -2.38 -0.02 2.76 16 38 H 0.02 1.05 7.30 -2.39 -0.02 1.03 16 39 H 0.01 0.81 7.61 -2.38 -0.02 0.80 16 40 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 41 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -76.54 359.53 3.06 -73.47 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: 0.26 Total: 10.21 kcal Atomic # 6 Polarization: 13.04 SS G_CDS: 6.63 Total: 19.66 kcal Atomic # 7 Polarization: -125.65 SS G_CDS: -5.78 Total: -131.44 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.07 Total: -20.86 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -76.54 3.06 -73.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015817578.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.409 kcal (2) G-P(sol) polarization free energy of solvation -76.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds