Wall clock time and date at job start Tue Mar 31 2020 08:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50707 * 120.00171 * 2 1 4 4 C 1.52997 * 109.47624 * 124.99463 * 3 2 1 5 5 N 1.46490 * 109.47283 * 179.97438 * 4 3 2 6 6 C 1.34816 * 126.59588 * 124.99965 * 5 4 3 7 7 C 1.36597 * 106.84044 * 180.02562 * 6 5 4 8 8 C 1.47524 * 125.76932 * 179.97438 * 7 6 5 9 9 O 1.21590 * 119.99845 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99813 * 179.97438 * 8 7 6 11 11 C 1.47022 * 125.64810 * 0.03054 * 10 8 7 12 12 C 1.54322 * 107.27131 * 178.88877 * 11 10 8 13 13 C 1.55159 * 102.94499 * 337.80902 * 12 11 10 14 14 H 1.08997 * 111.00112 * 277.39164 * 13 12 11 15 15 N 1.46490 * 111.00840 * 153.57161 * 13 12 11 16 16 C 1.36935 * 120.00121 * 154.99548 * 15 13 12 17 17 H 1.07997 * 120.00139 * 0.02562 * 16 15 13 18 18 C 1.38816 * 120.00401 * 180.02562 * 16 15 13 19 19 N 1.31624 * 119.99569 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00172 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.46685 * 269.99637 * 20 18 16 22 22 H 1.48494 * 109.47357 * 29.99716 * 20 18 16 23 23 H 1.48502 * 109.47120 * 150.00435 * 20 18 16 24 24 C 1.47426 * 125.64833 * 179.97438 * 10 8 7 25 25 N 1.34398 * 108.45691 * 0.24146 * 7 6 5 26 26 N 1.28757 * 109.52560 * 359.58664 * 25 7 6 27 27 H 1.08004 * 120.00185 * 0.02562 * 1 2 3 28 28 H 1.07998 * 120.00312 * 180.02562 * 1 2 3 29 29 H 1.07998 * 120.00155 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.46845 * 4.98797 * 3 2 1 31 31 H 1.09005 * 109.46343 * 244.99774 * 3 2 1 32 32 H 1.09002 * 109.47010 * 59.99322 * 4 3 2 33 33 H 1.09005 * 109.47075 * 300.00229 * 4 3 2 34 34 H 1.08001 * 126.58072 * 0.02562 * 6 5 4 35 35 H 1.08997 * 109.88394 * 59.47296 * 11 10 8 36 36 H 1.08999 * 109.88459 * 298.30854 * 11 10 8 37 37 H 1.08998 * 110.72649 * 219.43940 * 12 11 10 38 38 H 1.09001 * 110.71965 * 96.16489 * 12 11 10 39 39 H 0.97000 * 120.00577 * 335.00148 * 15 13 12 40 40 H 0.97001 * 119.99885 * 359.97438 * 19 18 16 41 41 H 1.09006 * 110.36031 * 85.34171 * 24 10 8 42 42 H 1.08995 * 110.37034 * 323.02592 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3333 1.1816 5 7 3.7679 2.6017 1.1812 6 6 3.8494 3.4832 2.1980 7 6 4.6288 4.5174 1.7636 8 6 4.9893 5.7139 2.5476 9 8 4.5823 5.8399 3.6864 10 7 5.7698 6.6674 2.0015 11 6 6.3278 6.6429 0.6416 12 6 7.1274 7.9490 0.4508 13 6 6.5070 8.8946 1.5131 14 1 5.5912 9.3535 1.1404 15 7 7.4695 9.9159 1.9331 16 6 7.0254 11.1103 2.4346 17 1 5.9656 11.2992 2.5208 18 6 7.9375 12.0783 2.8321 19 7 9.2292 11.8484 2.7266 20 14 7.3317 13.7073 3.5169 21 1 7.1617 14.6785 2.4063 22 1 6.0290 13.5034 4.1999 23 1 8.3229 14.2351 4.4886 24 6 6.2044 7.9082 2.6686 25 7 5.0069 4.2633 0.4992 26 7 4.5191 3.1327 0.1231 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1316 0.0894 31 1 2.6213 1.4025 -0.9314 32 1 3.7399 0.5067 1.0922 33 1 2.4771 1.2358 2.1130 34 1 3.3871 3.3896 3.1696 35 1 5.5208 6.5922 -0.0894 36 1 6.9887 5.7837 0.5274 37 1 6.9810 8.3478 -0.5530 38 1 8.1862 7.7858 0.6514 39 1 8.4214 9.7463 1.8560 40 1 9.5437 11.0023 2.3713 41 1 7.1033 7.7271 3.2580 42 1 5.4071 8.2981 3.3013 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019493629.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:54 Heat of formation + Delta-G solvation = 101.391354 kcal Electronic energy + Delta-G solvation = -23964.142332 eV Core-core repulsion = 20368.597819 eV Total energy + Delta-G solvation = -3595.544513 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.39227 -39.49904 -37.26547 -36.85085 -34.45981 -34.07564 -31.70081 -31.09824 -29.77303 -29.42934 -27.37100 -25.01730 -24.43087 -23.13223 -22.23560 -21.89923 -20.48373 -20.28844 -19.48136 -17.74700 -17.40056 -16.52857 -16.46771 -15.99538 -15.74625 -15.33701 -14.87405 -14.67149 -14.43608 -13.96211 -13.66577 -13.51522 -13.31046 -13.14141 -12.91749 -12.52310 -12.32141 -12.18523 -12.05302 -11.74650 -11.56708 -11.12197 -11.03559 -10.69307 -10.65870 -10.55706 -10.20727 -10.01299 -10.00027 -9.95405 -9.45253 -9.20344 -8.98667 -8.31395 -7.11208 -6.13252 -3.15009 0.91848 1.54254 1.65684 1.82899 3.14960 3.36358 3.53137 3.57797 3.71834 3.89723 4.03394 4.13978 4.34265 4.51295 4.58565 4.64852 4.66407 4.76043 4.94113 5.02549 5.15370 5.27154 5.33748 5.36250 5.38260 5.55538 5.64624 5.75346 5.87692 5.98180 6.05572 6.06282 6.10655 6.12383 6.26628 6.40055 6.54378 6.59978 6.85566 7.69833 7.78861 7.80625 8.29611 8.72685 9.16780 10.03289 10.16576 11.34741 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.037580 B = 0.002312 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.893175 B =12106.825901 C =12351.325719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C -0.107 4.107 4 C 0.127 3.873 5 N -0.364 5.364 6 C 0.091 3.909 7 C -0.091 4.091 8 C 0.610 3.390 9 O -0.546 6.546 10 N -0.597 5.597 11 C 0.115 3.885 12 C -0.145 4.145 13 C 0.177 3.823 14 H 0.069 0.931 15 N -0.722 5.722 16 C -0.338 4.338 17 H 0.068 0.932 18 C -0.042 4.042 19 N -0.941 5.941 20 Si 1.083 2.917 21 H -0.295 1.295 22 H -0.294 1.294 23 H -0.287 1.287 24 C 0.084 3.916 25 N -0.199 5.199 26 N -0.069 5.069 27 H 0.098 0.902 28 H 0.102 0.898 29 H 0.115 0.885 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.204 0.796 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.370 0.630 40 H 0.256 0.744 41 H 0.067 0.933 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.986 -25.621 -5.599 30.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.178 4.178 3 C -0.145 4.145 4 C 0.006 3.994 5 N -0.149 5.149 6 C -0.066 4.066 7 C -0.230 4.230 8 C 0.396 3.604 9 O -0.424 6.424 10 N -0.329 5.329 11 C -0.009 4.009 12 C -0.184 4.184 13 C 0.065 3.935 14 H 0.087 0.913 15 N -0.363 5.363 16 C -0.469 4.469 17 H 0.086 0.914 18 C -0.239 4.239 19 N -0.586 5.586 20 Si 0.914 3.086 21 H -0.222 1.222 22 H -0.220 1.220 23 H -0.213 1.213 24 C -0.041 4.041 25 N -0.073 5.073 26 N -0.049 5.049 27 H 0.116 0.884 28 H 0.120 0.880 29 H 0.133 0.867 30 H 0.095 0.905 31 H 0.110 0.890 32 H 0.118 0.882 33 H 0.124 0.876 34 H 0.221 0.779 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.204 0.796 40 H 0.067 0.933 41 H 0.086 0.914 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.504 -24.269 -5.757 28.854 hybrid contribution -0.662 -1.748 0.357 1.903 sum -15.167 -26.017 -5.400 30.595 Atomic orbital electron populations 1.23973 0.95896 1.02347 0.99431 1.22736 0.96016 0.97629 1.01404 1.21030 0.98021 0.96786 0.98632 1.22011 0.94439 0.81434 1.01525 1.50532 1.35930 1.17444 1.11005 1.23366 0.98485 0.89384 0.95365 1.21516 1.08042 1.00114 0.93348 1.16393 0.78541 0.80583 0.84923 1.90800 1.55641 1.78337 1.17618 1.48291 1.48074 1.20594 1.15978 1.22037 0.97476 0.98342 0.82998 1.23012 0.99953 0.94545 1.00889 1.21254 0.93852 0.87899 0.90527 0.91252 1.42320 1.03672 1.14126 1.76203 1.20110 0.93966 0.93423 1.39368 0.91437 1.25815 0.94260 1.03283 1.00592 1.70860 1.13201 1.26158 1.48367 0.83191 0.74367 0.74808 0.76248 1.22247 1.22029 1.21349 1.23432 0.99790 0.82689 0.98217 1.74765 1.15102 1.07123 1.10288 1.81966 1.09313 1.05088 1.08529 0.88354 0.87986 0.86705 0.90524 0.88998 0.88188 0.87578 0.77922 0.91022 0.91294 0.90165 0.90796 0.79594 0.93289 0.91440 0.90792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.70 14.32 29.02 0.42 -0.28 16 2 C -0.16 -0.60 9.52 -36.02 -0.34 -0.95 16 3 C -0.11 -0.52 5.86 -27.88 -0.16 -0.68 16 4 C 0.13 0.59 6.52 -4.05 -0.03 0.56 16 5 N -0.36 -3.27 3.69 -61.07 -0.23 -3.50 16 6 C 0.09 0.93 11.27 -16.83 -0.19 0.74 16 7 C -0.09 -1.27 6.85 -83.55 -0.57 -1.85 16 8 C 0.61 10.46 7.85 -12.47 -0.10 10.36 16 9 O -0.55 -10.66 17.12 5.29 0.09 -10.57 16 10 N -0.60 -10.37 3.33 -171.75 -0.57 -10.94 16 11 C 0.11 1.74 5.51 -3.06 -0.02 1.72 16 12 C -0.14 -2.36 6.60 -24.90 -0.16 -2.52 16 13 C 0.18 3.56 3.71 -65.78 -0.24 3.32 16 14 H 0.07 1.43 8.09 -51.93 -0.42 1.01 16 15 N -0.72 -17.85 5.24 -51.35 -0.27 -18.12 16 16 C -0.34 -9.43 9.96 -15.06 -0.15 -9.58 16 17 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 18 C -0.04 -1.20 5.50 -17.43 -0.10 -1.30 16 19 N -0.94 -28.91 13.70 55.49 0.76 -28.15 16 20 Si 1.08 25.99 29.92 -169.99 -5.09 20.91 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 C 0.08 1.65 6.60 -2.52 -0.02 1.63 16 25 N -0.20 -2.80 9.78 32.85 0.32 -2.48 16 26 N -0.07 -0.84 13.65 60.35 0.82 -0.02 16 27 H 0.10 0.39 7.84 -52.48 -0.41 -0.03 16 28 H 0.10 0.30 8.06 -52.49 -0.42 -0.12 16 29 H 0.12 0.31 8.06 -52.49 -0.42 -0.12 16 30 H 0.08 0.43 7.79 -51.93 -0.40 0.02 16 31 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.11 0.25 8.08 -51.93 -0.42 -0.17 16 34 H 0.20 1.45 8.06 -52.49 -0.42 1.03 16 35 H 0.07 1.04 7.61 -51.93 -0.40 0.65 16 36 H 0.07 1.00 7.74 -51.93 -0.40 0.60 16 37 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 38 H 0.07 1.20 8.00 -51.93 -0.42 0.79 16 39 H 0.37 9.36 6.60 -40.82 -0.27 9.09 16 40 H 0.26 7.70 6.77 -40.82 -0.28 7.43 16 41 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.07 1.55 8.04 -51.93 -0.42 1.14 16 LS Contribution 358.95 15.07 5.41 5.41 Total: -1.00 -34.62 358.95 -6.41 -41.03 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -6.00 Total: 5.25 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -1.66 Total: 1.18 kcal Atomic # 7 Polarization: -64.04 SS G_CDS: 0.84 Total: -63.20 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.09 Total: -10.57 kcal Atomic # 14 Polarization: 25.99 SS G_CDS: -5.09 Total: 20.91 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.62 -6.41 -41.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019493629.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.420 kcal (2) G-P(sol) polarization free energy of solvation -34.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds