Wall clock time and date at job start Tue Mar 31 2020 08:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50707 * 120.00171 * 2 1 4 4 C 1.52997 * 109.47624 * 124.99463 * 3 2 1 5 5 N 1.46490 * 109.47283 * 179.97438 * 4 3 2 6 6 C 1.34816 * 126.59588 * 124.99965 * 5 4 3 7 7 C 1.36597 * 106.84044 * 180.02562 * 6 5 4 8 8 C 1.47524 * 125.76932 * 179.97438 * 7 6 5 9 9 O 1.21590 * 119.99845 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99813 * 179.97438 * 8 7 6 11 11 C 1.47022 * 125.64810 * 0.03054 * 10 8 7 12 12 C 1.54322 * 107.27131 * 178.88877 * 11 10 8 13 13 C 1.55159 * 102.94499 * 337.80902 * 12 11 10 14 14 H 1.08997 * 111.00112 * 277.39164 * 13 12 11 15 15 N 1.46490 * 111.00840 * 153.57161 * 13 12 11 16 16 C 1.36935 * 120.00121 * 154.99548 * 15 13 12 17 17 H 1.07997 * 120.00139 * 0.02562 * 16 15 13 18 18 C 1.38816 * 120.00401 * 180.02562 * 16 15 13 19 19 N 1.31624 * 119.99569 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00172 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.46685 * 269.99637 * 20 18 16 22 22 H 1.48494 * 109.47357 * 29.99716 * 20 18 16 23 23 H 1.48502 * 109.47120 * 150.00435 * 20 18 16 24 24 C 1.47426 * 125.64833 * 179.97438 * 10 8 7 25 25 N 1.34398 * 108.45691 * 0.24146 * 7 6 5 26 26 N 1.28757 * 109.52560 * 359.58664 * 25 7 6 27 27 H 1.08004 * 120.00185 * 0.02562 * 1 2 3 28 28 H 1.07998 * 120.00312 * 180.02562 * 1 2 3 29 29 H 1.07998 * 120.00155 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.46845 * 4.98797 * 3 2 1 31 31 H 1.09005 * 109.46343 * 244.99774 * 3 2 1 32 32 H 1.09002 * 109.47010 * 59.99322 * 4 3 2 33 33 H 1.09005 * 109.47075 * 300.00229 * 4 3 2 34 34 H 1.08001 * 126.58072 * 0.02562 * 6 5 4 35 35 H 1.08997 * 109.88394 * 59.47296 * 11 10 8 36 36 H 1.08999 * 109.88459 * 298.30854 * 11 10 8 37 37 H 1.08998 * 110.72649 * 219.43940 * 12 11 10 38 38 H 1.09001 * 110.71965 * 96.16489 * 12 11 10 39 39 H 0.97000 * 120.00577 * 335.00148 * 15 13 12 40 40 H 0.97001 * 119.99885 * 359.97438 * 19 18 16 41 41 H 1.09006 * 110.36031 * 85.34171 * 24 10 8 42 42 H 1.08995 * 110.37034 * 323.02592 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3333 1.1816 5 7 3.7679 2.6017 1.1812 6 6 3.8494 3.4832 2.1980 7 6 4.6288 4.5174 1.7636 8 6 4.9893 5.7139 2.5476 9 8 4.5823 5.8399 3.6864 10 7 5.7698 6.6674 2.0015 11 6 6.3278 6.6429 0.6416 12 6 7.1274 7.9490 0.4508 13 6 6.5070 8.8946 1.5131 14 1 5.5912 9.3535 1.1404 15 7 7.4695 9.9159 1.9331 16 6 7.0254 11.1103 2.4346 17 1 5.9656 11.2992 2.5208 18 6 7.9375 12.0783 2.8321 19 7 9.2292 11.8484 2.7266 20 14 7.3317 13.7073 3.5169 21 1 7.1617 14.6785 2.4063 22 1 6.0290 13.5034 4.1999 23 1 8.3229 14.2351 4.4886 24 6 6.2044 7.9082 2.6686 25 7 5.0069 4.2633 0.4992 26 7 4.5191 3.1327 0.1231 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1316 0.0894 31 1 2.6213 1.4025 -0.9314 32 1 3.7399 0.5067 1.0922 33 1 2.4771 1.2358 2.1130 34 1 3.3871 3.3896 3.1696 35 1 5.5208 6.5922 -0.0894 36 1 6.9887 5.7837 0.5274 37 1 6.9810 8.3478 -0.5530 38 1 8.1862 7.7858 0.6514 39 1 8.4214 9.7463 1.8560 40 1 9.5437 11.0023 2.3713 41 1 7.1033 7.7271 3.2580 42 1 5.4071 8.2981 3.3013 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019493629.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:54 Heat of formation + Delta-G solvation = 77.690474 kcal Electronic energy + Delta-G solvation = -23965.170080 eV Core-core repulsion = 20368.597819 eV Total energy + Delta-G solvation = -3596.572260 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.29222 -40.88741 -38.75978 -37.33833 -36.28908 -34.76085 -33.39882 -32.09579 -31.06122 -30.40881 -28.92928 -26.09791 -25.57564 -24.82960 -23.34886 -22.75539 -21.86814 -20.78572 -20.64282 -19.55885 -18.71657 -17.54416 -17.47763 -17.04335 -16.75512 -16.45976 -16.09073 -15.75656 -15.68495 -15.46624 -14.94161 -14.80573 -14.41005 -14.05831 -13.93936 -13.79359 -13.60978 -13.17444 -12.98568 -12.78825 -12.70901 -12.49249 -12.35691 -12.10716 -12.02839 -11.86817 -11.75964 -11.35797 -11.34099 -11.24639 -10.99091 -10.44330 -10.28364 -9.74723 -9.18587 -8.40350 -5.36472 0.09297 0.56535 1.00237 1.39984 1.59882 1.70166 1.83414 1.85687 2.13507 2.70835 3.04815 3.29973 3.37147 3.53126 3.66387 3.77805 3.85185 3.90342 3.97843 4.03257 4.16852 4.20507 4.30070 4.34772 4.38453 4.42198 4.53279 4.68607 4.80459 4.86165 4.93193 4.97162 5.06228 5.07738 5.15210 5.28627 5.41063 5.60422 5.71877 5.82217 6.38587 6.49269 6.76650 7.01003 7.05649 7.94831 8.05308 9.11242 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.037580 B = 0.002312 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.893175 B =12106.825901 C =12351.325719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.158 4.158 3 C -0.102 4.102 4 C 0.118 3.882 5 N -0.348 5.348 6 C 0.114 3.886 7 C -0.121 4.121 8 C 0.609 3.391 9 O -0.577 6.577 10 N -0.602 5.602 11 C 0.126 3.874 12 C -0.132 4.132 13 C 0.172 3.828 14 H 0.065 0.935 15 N -0.734 5.734 16 C -0.336 4.336 17 H 0.067 0.933 18 C -0.100 4.100 19 N -0.972 5.972 20 Si 1.129 2.871 21 H -0.282 1.282 22 H -0.276 1.276 23 H -0.293 1.293 24 C 0.096 3.904 25 N -0.218 5.218 26 N -0.082 5.082 27 H 0.094 0.906 28 H 0.112 0.888 29 H 0.130 0.870 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.119 0.881 33 H 0.138 0.862 34 H 0.236 0.764 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.074 0.926 39 H 0.365 0.635 40 H 0.246 0.754 41 H 0.052 0.948 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.619 -27.673 -5.956 32.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.177 4.177 3 C -0.140 4.140 4 C -0.001 4.001 5 N -0.132 5.132 6 C -0.044 4.044 7 C -0.261 4.261 8 C 0.397 3.603 9 O -0.457 6.457 10 N -0.334 5.334 11 C 0.003 3.997 12 C -0.171 4.171 13 C 0.061 3.939 14 H 0.083 0.917 15 N -0.374 5.374 16 C -0.468 4.468 17 H 0.085 0.915 18 C -0.291 4.291 19 N -0.620 5.620 20 Si 0.954 3.046 21 H -0.209 1.209 22 H -0.201 1.201 23 H -0.220 1.220 24 C -0.030 4.030 25 N -0.091 5.091 26 N -0.063 5.063 27 H 0.112 0.888 28 H 0.130 0.870 29 H 0.147 0.853 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.137 0.863 33 H 0.156 0.844 34 H 0.252 0.748 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.116 0.884 38 H 0.093 0.907 39 H 0.198 0.802 40 H 0.057 0.943 41 H 0.070 0.930 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.181 -26.400 -6.169 31.573 hybrid contribution -0.278 -1.304 0.439 1.403 sum -16.459 -27.704 -5.730 32.730 Atomic orbital electron populations 1.24102 0.96126 1.02707 0.99320 1.22761 0.95937 0.97532 1.01420 1.20956 0.97768 0.97200 0.98124 1.22507 0.94767 0.79829 1.02963 1.50815 1.34627 1.18047 1.09709 1.23784 0.96439 0.87915 0.96285 1.21200 1.10764 1.00273 0.93846 1.16800 0.77613 0.81085 0.84794 1.90770 1.56730 1.79172 1.19031 1.48313 1.48564 1.19968 1.16561 1.22039 0.97710 0.97890 0.82022 1.22933 0.99871 0.93911 1.00351 1.21375 0.93155 0.87619 0.91745 0.91745 1.42430 1.04133 1.14417 1.76468 1.20411 0.93952 0.94375 1.38024 0.91488 1.27185 0.93976 1.06643 1.01318 1.70963 1.14344 1.26096 1.50571 0.82601 0.74473 0.71563 0.75965 1.20889 1.20090 1.21960 1.22984 0.98420 0.83958 0.97602 1.74717 1.15932 1.08050 1.10420 1.81887 1.09958 1.04745 1.09680 0.88775 0.87011 0.85268 0.91431 0.90402 0.86275 0.84391 0.74764 0.89924 0.90178 0.88401 0.90700 0.80200 0.94333 0.93003 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.06 14.32 67.79 0.97 -0.09 16 2 C -0.16 -0.80 9.52 25.65 0.24 -0.56 16 3 C -0.10 -0.76 5.86 29.85 0.17 -0.59 16 4 C 0.12 0.68 6.52 86.38 0.56 1.25 16 5 N -0.35 -5.29 3.69 -347.11 -1.28 -6.57 16 6 C 0.11 2.03 11.27 83.85 0.95 2.98 16 7 C -0.12 -3.24 6.85 40.82 0.28 -2.96 16 8 C 0.61 20.68 7.85 86.69 0.68 21.36 16 9 O -0.58 -22.54 17.12 -4.00 -0.07 -22.60 16 10 N -0.60 -20.86 3.33 -815.54 -2.71 -23.57 16 11 C 0.13 3.69 5.51 86.73 0.48 4.17 16 12 C -0.13 -4.19 6.60 31.78 0.21 -3.98 16 13 C 0.17 6.97 3.71 46.39 0.17 7.14 16 14 H 0.06 2.68 8.09 -2.39 -0.02 2.66 16 15 N -0.73 -36.89 5.24 -316.38 -1.66 -38.55 16 16 C -0.34 -18.96 9.96 84.03 0.84 -18.12 16 17 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 18 C -0.10 -5.80 5.50 84.86 0.47 -5.33 16 19 N -0.97 -60.77 13.70 21.65 0.30 -60.48 16 20 Si 1.13 52.47 29.92 68.60 2.05 54.52 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 22 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 23 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 24 C 0.10 3.87 6.60 86.86 0.57 4.44 16 25 N -0.22 -5.82 9.78 -49.99 -0.49 -6.31 16 26 N -0.08 -1.87 13.65 37.02 0.51 -1.36 16 27 H 0.09 0.60 7.84 -2.91 -0.02 0.58 16 28 H 0.11 0.41 8.06 -2.91 -0.02 0.39 16 29 H 0.13 0.29 8.06 -2.91 -0.02 0.27 16 30 H 0.07 0.63 7.79 -2.39 -0.02 0.61 16 31 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.14 0.01 8.08 -2.38 -0.02 -0.01 16 34 H 0.24 2.52 8.06 -2.91 -0.02 2.49 16 35 H 0.08 2.28 7.61 -2.39 -0.02 2.26 16 36 H 0.08 2.22 7.74 -2.39 -0.02 2.20 16 37 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 38 H 0.07 2.39 8.00 -2.39 -0.02 2.37 16 39 H 0.37 18.93 6.60 -92.71 -0.61 18.32 16 40 H 0.25 15.25 6.77 -92.71 -0.63 14.62 16 41 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 42 H 0.05 2.36 8.04 -2.39 -0.02 2.34 16 Total: -1.00 -76.07 358.95 3.80 -72.28 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: 0.56 Total: 22.93 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 6.60 Total: 9.72 kcal Atomic # 7 Polarization: -131.50 SS G_CDS: -5.34 Total: -136.84 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.07 Total: -22.60 kcal Atomic # 14 Polarization: 52.47 SS G_CDS: 2.05 Total: 54.52 kcal Total: -76.07 3.80 -72.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019493629.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.966 kcal (2) G-P(sol) polarization free energy of solvation -76.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds