Wall clock time and date at job start Tue Mar 31 2020 09:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.46944 * 2 1 4 4 C 1.50695 * 109.46879 * 119.99809 * 2 1 3 5 5 O 1.21285 * 120.00351 * 89.73974 * 4 2 1 6 6 N 1.34781 * 120.00015 * 269.72974 * 4 2 1 7 7 C 1.47616 * 120.90104 * 4.39910 * 6 4 2 8 8 C 1.53888 * 107.50504 * 132.48866 * 7 6 4 9 9 H 1.08997 * 112.10041 * 182.66499 * 8 7 6 10 10 C 1.54553 * 108.36752 * 307.00850 * 8 7 6 11 11 C 1.54276 * 104.85153 * 89.29261 * 10 8 7 12 12 C 1.54968 * 104.80836 * 359.81459 * 11 10 8 13 13 H 1.08998 * 112.25864 * 146.60358 * 12 11 10 14 14 C 1.47166 * 120.70978 * 185.08229 * 6 4 2 15 15 N 1.48308 * 107.20558 * 59.10920 * 8 7 6 16 16 C 1.36940 * 128.07103 * 106.10372 * 15 8 7 17 17 H 1.07996 * 120.00422 * 16.97176 * 16 15 8 18 18 C 1.38815 * 119.99625 * 196.97432 * 16 15 8 19 19 N 1.31618 * 119.99933 * 9.56801 * 18 16 15 20 20 Si 1.86799 * 119.99816 * 189.56556 * 18 16 15 21 21 H 1.48495 * 109.47229 * 179.97438 * 20 18 16 22 22 H 1.48493 * 109.47257 * 300.00037 * 20 18 16 23 23 H 1.48503 * 109.47104 * 60.00002 * 20 18 16 24 24 N 1.46495 * 109.47188 * 240.00009 * 2 1 3 25 25 C 1.34429 * 126.82225 * 324.70504 * 24 2 1 26 26 N 1.30841 * 108.07885 * 179.89635 * 25 24 2 27 27 C 1.33237 * 109.82510 * 0.38067 * 26 25 24 28 28 N 1.30715 * 108.94864 * 359.76565 * 27 26 25 29 29 H 1.09000 * 109.47021 * 305.88101 * 1 2 3 30 30 H 1.09002 * 109.46768 * 65.88199 * 1 2 3 31 31 H 1.09002 * 109.46981 * 185.87952 * 1 2 3 32 32 H 1.08999 * 109.38344 * 13.37522 * 7 6 4 33 33 H 1.08997 * 110.63882 * 252.31093 * 7 6 4 34 34 H 1.09002 * 110.36461 * 208.14184 * 10 8 7 35 35 H 1.09005 * 110.36004 * 330.45579 * 10 8 7 36 36 H 1.09003 * 110.36377 * 118.84129 * 11 10 8 37 37 H 1.08998 * 110.36368 * 241.05579 * 11 10 8 38 38 H 1.08994 * 109.75282 * 107.61244 * 14 6 4 39 39 H 1.08997 * 109.74919 * 346.87419 * 14 6 4 40 40 H 0.97007 * 119.99593 * 180.02562 * 19 18 16 41 41 H 1.08003 * 125.96194 * 0.04720 * 25 24 2 42 42 H 1.07998 * 125.52632 * 179.72751 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.2299 -1.9066 1.2019 6 7 2.2621 -0.0162 2.3627 7 6 1.9380 1.4213 2.4496 8 6 1.1701 1.6440 3.7645 9 1 0.8515 2.6796 3.8829 10 6 -0.0201 0.6589 3.8061 11 6 0.5420 -0.6125 4.4752 12 6 2.0261 -0.2801 4.7731 13 1 2.3812 -0.7589 5.6856 14 6 2.8569 -0.6717 3.5385 15 7 2.0539 1.1996 4.8694 16 6 2.7402 1.9748 5.7656 17 1 2.4706 3.0119 5.9002 18 6 3.7826 1.4276 6.5012 19 7 4.2355 0.2271 6.2081 20 14 4.5423 2.3952 7.9069 21 1 5.6284 1.5954 8.5282 22 1 5.1007 3.6688 7.3863 23 1 3.5015 2.6902 8.9242 24 7 2.0184 -0.6906 -1.1961 25 6 1.4589 -1.7552 -1.7966 26 7 2.1942 -2.0704 -2.8320 27 6 3.2314 -1.2386 -2.9196 28 7 3.1675 -0.3758 -1.9397 29 1 -0.3633 0.6023 0.8327 30 1 -0.3633 0.4199 -0.9380 31 1 -0.3633 -1.0223 0.1053 32 1 1.3101 1.7023 1.6042 33 1 2.8482 2.0210 2.4487 34 1 -0.8342 1.0726 4.4014 35 1 -0.3632 0.4357 2.7959 36 1 0.0045 -0.8240 5.3996 37 1 0.4736 -1.4611 3.7946 38 1 3.8862 -0.3365 3.6657 39 1 2.8346 -1.7536 3.4076 40 1 4.9637 -0.1554 6.7224 41 1 0.5581 -2.2606 -1.4811 42 1 4.0006 -1.2723 -3.6769 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029278318.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:32:00 Heat of formation + Delta-G solvation = 105.034651 kcal Electronic energy + Delta-G solvation = -26461.148566 eV Core-core repulsion = 22865.762038 eV Total energy + Delta-G solvation = -3595.386528 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.11078 -40.25154 -38.09973 -35.01201 -33.88867 -32.48472 -31.37490 -30.85295 -29.97908 -29.30122 -26.60509 -25.20402 -24.01525 -23.68809 -22.02170 -21.71733 -19.98097 -19.78196 -18.80753 -17.60483 -17.10505 -16.40581 -15.73309 -15.46827 -15.02753 -14.79168 -14.61960 -14.24664 -14.06570 -13.79671 -13.36534 -13.22420 -12.99116 -12.71334 -12.58684 -12.38338 -11.92257 -11.86883 -11.73835 -11.51295 -11.12840 -10.94696 -10.88562 -10.48967 -10.29668 -10.12707 -10.01392 -9.98577 -9.77924 -9.73424 -9.68716 -9.22281 -8.86213 -8.24254 -6.95183 -5.94097 -3.30709 1.60666 2.10443 2.80067 3.00175 3.30517 3.35236 3.37311 3.38526 4.30094 4.32807 4.35480 4.45693 4.61520 4.80567 4.99063 5.16727 5.20702 5.22813 5.33921 5.44211 5.51369 5.59337 5.62839 5.68794 5.81715 6.07526 6.17519 6.20083 6.25869 6.40463 6.43985 6.48559 6.55113 6.67485 6.70521 6.77218 6.82361 7.16744 7.38014 7.58822 7.81977 8.03278 8.08797 8.37659 8.95258 9.57873 10.33513 11.19127 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.025330 B = 0.004102 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.134590 B = 6823.900395 C = 7188.287972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.137 3.863 3 H 0.124 0.876 4 C 0.499 3.501 5 O -0.544 6.544 6 N -0.581 5.581 7 C 0.089 3.911 8 C 0.134 3.866 9 H 0.080 0.920 10 C -0.123 4.123 11 C -0.137 4.137 12 C 0.170 3.830 13 H 0.116 0.884 14 C 0.112 3.888 15 N -0.582 5.582 16 C -0.233 4.233 17 H 0.076 0.924 18 C 0.001 3.999 19 N -0.912 5.912 20 Si 0.913 3.087 21 H -0.290 1.290 22 H -0.284 1.284 23 H -0.284 1.284 24 N -0.360 5.360 25 C 0.276 3.724 26 N -0.552 5.552 27 C 0.196 3.804 28 N -0.319 5.319 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.257 0.743 41 H 0.214 0.786 42 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.117 0.822 -11.398 14.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.029 3.971 3 H 0.141 0.859 4 C 0.283 3.717 5 O -0.422 6.422 6 N -0.313 5.313 7 C -0.037 4.037 8 C 0.025 3.975 9 H 0.098 0.902 10 C -0.162 4.162 11 C -0.176 4.176 12 C 0.063 3.937 13 H 0.134 0.866 14 C -0.011 4.011 15 N -0.303 5.303 16 C -0.361 4.361 17 H 0.094 0.906 18 C -0.197 4.197 19 N -0.557 5.557 20 Si 0.743 3.257 21 H -0.216 1.216 22 H -0.210 1.210 23 H -0.211 1.211 24 N -0.151 5.151 25 C -0.021 4.021 26 N -0.280 5.280 27 C -0.107 4.107 28 N -0.146 5.146 29 H 0.114 0.886 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.230 0.770 42 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -8.339 0.558 -11.211 13.983 hybrid contribution 0.467 0.491 0.849 1.086 sum -7.872 1.049 -10.362 13.055 Atomic orbital electron populations 1.22192 0.90200 1.04771 1.04728 1.21325 0.96542 0.97815 0.81373 0.85854 1.20309 0.79432 0.87698 0.84265 1.90702 1.53475 1.14347 1.83722 1.48315 1.59838 1.10437 1.12686 1.22789 1.00526 0.80727 0.99609 1.21952 0.90816 0.97162 0.87585 0.90161 1.22511 0.97828 0.96938 0.98964 1.22710 0.99256 0.96459 0.99210 1.21912 0.89699 0.85593 0.96501 0.86601 1.22522 0.98660 0.96338 0.83582 1.45175 1.52889 1.01152 1.31107 1.18935 1.09454 0.94064 1.13678 0.90581 1.24877 0.96872 0.97373 1.00558 1.69835 1.28470 1.16239 1.41117 0.86201 0.78576 0.78923 0.82016 1.21553 1.21022 1.21081 1.50153 1.18952 1.24335 1.21621 1.25867 0.99166 0.87644 0.89406 1.70567 1.07432 1.28938 1.21025 1.25958 0.97292 0.90292 0.97149 1.78065 1.02864 1.25508 1.08209 0.88633 0.90244 0.90539 0.91853 0.90914 0.92399 0.93032 0.92677 0.92829 0.89812 0.91209 0.93291 0.76959 0.76781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 8.59 37.16 0.32 -1.09 16 2 C 0.14 1.75 2.91 -69.09 -0.20 1.55 16 3 H 0.12 1.49 6.56 -51.93 -0.34 1.15 16 4 C 0.50 8.44 6.87 -10.99 -0.08 8.37 16 5 O -0.54 -11.09 15.89 5.55 0.09 -11.00 16 6 N -0.58 -10.27 2.24 -171.17 -0.38 -10.65 16 7 C 0.09 1.38 5.62 -2.97 -0.02 1.37 16 8 C 0.13 2.30 4.27 -65.66 -0.28 2.02 16 9 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 10 C -0.12 -1.88 6.18 -25.25 -0.16 -2.04 16 11 C -0.14 -2.44 6.21 -25.02 -0.16 -2.59 16 12 C 0.17 3.65 3.12 -65.43 -0.20 3.45 16 13 H 0.12 2.87 6.49 -51.93 -0.34 2.53 16 14 C 0.11 2.35 5.82 -3.22 -0.02 2.33 16 15 N -0.58 -12.93 2.80 -152.34 -0.43 -13.36 16 16 C -0.23 -5.82 10.36 -15.06 -0.16 -5.98 16 17 H 0.08 1.84 7.85 -52.49 -0.41 1.43 16 18 C 0.00 0.03 5.41 -17.43 -0.09 -0.07 16 19 N -0.91 -24.38 10.37 55.49 0.58 -23.80 16 20 Si 0.91 20.63 29.56 -169.99 -5.03 15.60 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 N -0.36 -5.16 3.30 -57.24 -0.19 -5.35 16 25 C 0.28 3.64 11.48 -90.65 -1.04 2.60 16 26 N -0.55 -7.93 11.19 -15.83 -0.18 -8.11 16 27 C 0.20 2.67 13.03 -91.81 -1.20 1.47 16 28 N -0.32 -4.97 12.70 29.29 0.37 -4.59 16 29 H 0.10 0.75 5.79 -51.93 -0.30 0.45 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.65 7.53 -51.93 -0.39 0.26 16 32 H 0.06 0.73 5.15 -51.93 -0.27 0.47 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.05 0.66 6.24 -51.93 -0.32 0.34 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.05 0.93 7.85 -51.93 -0.41 0.53 16 38 H 0.08 2.05 7.69 -51.93 -0.40 1.65 16 39 H 0.07 1.51 7.08 -51.93 -0.37 1.14 16 40 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 41 H 0.21 2.05 7.50 -52.48 -0.39 1.66 16 42 H 0.22 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 332.05 15.07 5.00 5.00 Total: -1.00 -31.58 332.05 -9.05 -40.63 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -5.61 Total: 4.23 kcal Atomic # 6 Polarization: 14.67 SS G_CDS: -3.28 Total: 11.39 kcal Atomic # 7 Polarization: -65.63 SS G_CDS: -0.23 Total: -65.86 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.09 Total: -11.00 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.58 -9.05 -40.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029278318.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.665 kcal (2) G-P(sol) polarization free energy of solvation -31.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds