Wall clock time and date at job start Tue Mar 31 2020 09:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.46944 * 2 1 4 4 C 1.50695 * 109.46879 * 119.99809 * 2 1 3 5 5 O 1.21285 * 120.00351 * 89.73974 * 4 2 1 6 6 N 1.34781 * 120.00015 * 269.72974 * 4 2 1 7 7 C 1.47616 * 120.90104 * 4.39910 * 6 4 2 8 8 C 1.53888 * 107.50504 * 132.48866 * 7 6 4 9 9 H 1.08997 * 112.10041 * 182.66499 * 8 7 6 10 10 C 1.54553 * 108.36752 * 307.00850 * 8 7 6 11 11 C 1.54276 * 104.85153 * 89.29261 * 10 8 7 12 12 C 1.54968 * 104.80836 * 359.81459 * 11 10 8 13 13 H 1.08998 * 112.25864 * 146.60358 * 12 11 10 14 14 C 1.47166 * 120.70978 * 185.08229 * 6 4 2 15 15 N 1.48308 * 107.20558 * 59.10920 * 8 7 6 16 16 C 1.36940 * 128.07103 * 106.10372 * 15 8 7 17 17 H 1.07996 * 120.00422 * 16.97176 * 16 15 8 18 18 C 1.38815 * 119.99625 * 196.97432 * 16 15 8 19 19 N 1.31618 * 119.99933 * 9.56801 * 18 16 15 20 20 Si 1.86799 * 119.99816 * 189.56556 * 18 16 15 21 21 H 1.48495 * 109.47229 * 179.97438 * 20 18 16 22 22 H 1.48493 * 109.47257 * 300.00037 * 20 18 16 23 23 H 1.48503 * 109.47104 * 60.00002 * 20 18 16 24 24 N 1.46495 * 109.47188 * 240.00009 * 2 1 3 25 25 C 1.34429 * 126.82225 * 324.70504 * 24 2 1 26 26 N 1.30841 * 108.07885 * 179.89635 * 25 24 2 27 27 C 1.33237 * 109.82510 * 0.38067 * 26 25 24 28 28 N 1.30715 * 108.94864 * 359.76565 * 27 26 25 29 29 H 1.09000 * 109.47021 * 305.88101 * 1 2 3 30 30 H 1.09002 * 109.46768 * 65.88199 * 1 2 3 31 31 H 1.09002 * 109.46981 * 185.87952 * 1 2 3 32 32 H 1.08999 * 109.38344 * 13.37522 * 7 6 4 33 33 H 1.08997 * 110.63882 * 252.31093 * 7 6 4 34 34 H 1.09002 * 110.36461 * 208.14184 * 10 8 7 35 35 H 1.09005 * 110.36004 * 330.45579 * 10 8 7 36 36 H 1.09003 * 110.36377 * 118.84129 * 11 10 8 37 37 H 1.08998 * 110.36368 * 241.05579 * 11 10 8 38 38 H 1.08994 * 109.75282 * 107.61244 * 14 6 4 39 39 H 1.08997 * 109.74919 * 346.87419 * 14 6 4 40 40 H 0.97007 * 119.99593 * 180.02562 * 19 18 16 41 41 H 1.08003 * 125.96194 * 0.04720 * 25 24 2 42 42 H 1.07998 * 125.52632 * 179.72751 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.2299 -1.9066 1.2019 6 7 2.2621 -0.0162 2.3627 7 6 1.9380 1.4213 2.4496 8 6 1.1701 1.6440 3.7645 9 1 0.8515 2.6796 3.8829 10 6 -0.0201 0.6589 3.8061 11 6 0.5420 -0.6125 4.4752 12 6 2.0261 -0.2801 4.7731 13 1 2.3812 -0.7589 5.6856 14 6 2.8569 -0.6717 3.5385 15 7 2.0539 1.1996 4.8694 16 6 2.7402 1.9748 5.7656 17 1 2.4706 3.0119 5.9002 18 6 3.7826 1.4276 6.5012 19 7 4.2355 0.2271 6.2081 20 14 4.5423 2.3952 7.9069 21 1 5.6284 1.5954 8.5282 22 1 5.1007 3.6688 7.3863 23 1 3.5015 2.6902 8.9242 24 7 2.0184 -0.6906 -1.1961 25 6 1.4589 -1.7552 -1.7966 26 7 2.1942 -2.0704 -2.8320 27 6 3.2314 -1.2386 -2.9196 28 7 3.1675 -0.3758 -1.9397 29 1 -0.3633 0.6023 0.8327 30 1 -0.3633 0.4199 -0.9380 31 1 -0.3633 -1.0223 0.1053 32 1 1.3101 1.7023 1.6042 33 1 2.8482 2.0210 2.4487 34 1 -0.8342 1.0726 4.4014 35 1 -0.3632 0.4357 2.7959 36 1 0.0045 -0.8240 5.3996 37 1 0.4736 -1.4611 3.7946 38 1 3.8862 -0.3365 3.6657 39 1 2.8346 -1.7536 3.4076 40 1 4.9637 -0.1554 6.7224 41 1 0.5581 -2.2606 -1.4811 42 1 4.0006 -1.2723 -3.6769 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029278318.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:31:59 Heat of formation + Delta-G solvation = 86.718773 kcal Electronic energy + Delta-G solvation = -26461.942802 eV Core-core repulsion = 22865.762038 eV Total energy + Delta-G solvation = -3596.180764 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.14276 -41.65632 -39.53865 -36.11574 -35.43097 -34.18576 -32.47491 -32.24696 -31.20959 -30.75274 -28.03474 -26.38514 -25.52389 -25.16171 -23.16034 -22.78187 -21.30576 -21.24409 -20.32563 -18.97150 -18.19874 -18.00465 -17.04002 -16.68128 -16.63311 -16.05679 -15.94505 -15.52761 -15.34692 -15.07190 -14.70750 -14.61497 -14.50751 -13.78712 -13.62142 -13.38704 -13.34362 -13.30396 -13.14744 -12.83308 -12.69964 -12.55833 -12.49471 -12.01680 -11.84702 -11.60196 -11.46710 -11.33961 -11.12376 -11.06553 -10.80057 -10.76201 -10.42139 -9.82532 -8.72080 -7.87319 -5.22869 0.55814 1.07684 1.48622 1.49974 1.55986 1.56266 1.96788 2.06651 2.50416 3.21488 3.33853 3.44472 3.46501 3.50967 3.73641 3.94309 4.06316 4.12506 4.25209 4.27550 4.30615 4.34066 4.54547 4.54949 4.66849 4.72603 4.85515 4.95964 4.97081 5.06662 5.09914 5.19290 5.24273 5.25574 5.42532 5.46074 5.53928 5.58006 5.77752 5.81543 6.21884 6.44610 6.99146 7.04698 7.08138 7.72788 8.51033 9.24553 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.025330 B = 0.004102 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.134590 B = 6823.900395 C = 7188.287972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.143 3.857 3 H 0.135 0.865 4 C 0.498 3.502 5 O -0.583 6.583 6 N -0.583 5.583 7 C 0.092 3.908 8 C 0.127 3.873 9 H 0.099 0.901 10 C -0.111 4.111 11 C -0.128 4.128 12 C 0.168 3.832 13 H 0.072 0.928 14 C 0.129 3.871 15 N -0.605 5.605 16 C -0.232 4.232 17 H 0.084 0.916 18 C -0.055 4.055 19 N -0.939 5.939 20 Si 0.969 3.031 21 H -0.303 1.303 22 H -0.278 1.278 23 H -0.280 1.280 24 N -0.370 5.370 25 C 0.277 3.723 26 N -0.573 5.573 27 C 0.196 3.804 28 N -0.357 5.357 29 H 0.113 0.887 30 H 0.104 0.896 31 H 0.080 0.920 32 H 0.118 0.882 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.038 0.962 39 H 0.054 0.946 40 H 0.245 0.755 41 H 0.245 0.755 42 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.955 2.304 -13.324 18.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.037 3.963 3 H 0.152 0.848 4 C 0.285 3.715 5 O -0.463 6.463 6 N -0.314 5.314 7 C -0.032 4.032 8 C 0.020 3.980 9 H 0.117 0.883 10 C -0.149 4.149 11 C -0.167 4.167 12 C 0.060 3.940 13 H 0.090 0.910 14 C 0.005 3.995 15 N -0.326 5.326 16 C -0.361 4.361 17 H 0.101 0.899 18 C -0.250 4.250 19 N -0.587 5.587 20 Si 0.798 3.202 21 H -0.229 1.229 22 H -0.204 1.204 23 H -0.206 1.206 24 N -0.160 5.160 25 C -0.019 4.019 26 N -0.301 5.301 27 C -0.106 4.106 28 N -0.184 5.184 29 H 0.131 0.869 30 H 0.123 0.877 31 H 0.099 0.901 32 H 0.135 0.865 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.056 0.944 39 H 0.072 0.928 40 H 0.054 0.946 41 H 0.261 0.739 42 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -11.220 2.085 -13.170 17.426 hybrid contribution 1.361 -0.016 1.387 1.943 sum -9.859 2.069 -11.783 15.502 Atomic orbital electron populations 1.22302 0.86402 1.05821 1.06876 1.21472 0.99179 0.97077 0.78583 0.84779 1.21112 0.78181 0.87339 0.84911 1.90684 1.54887 1.16363 1.84381 1.48281 1.59807 1.11260 1.12078 1.22835 1.00361 0.79034 1.00954 1.22274 0.90578 0.98757 0.86353 0.88270 1.22474 0.97015 0.94451 1.01004 1.22577 0.96325 0.98155 0.99668 1.21716 0.92090 0.85487 0.94725 0.91025 1.21947 0.96580 0.95427 0.85593 1.45369 1.53294 1.01367 1.32613 1.19286 1.08767 0.94484 1.13553 0.89863 1.25553 0.98128 0.98288 1.02992 1.70043 1.28932 1.17710 1.41985 0.85303 0.77445 0.77653 0.79756 1.22942 1.20445 1.20580 1.50276 1.18881 1.24978 1.21899 1.26542 0.99627 0.87010 0.88702 1.70602 1.08077 1.29498 1.21958 1.26622 0.97520 0.89348 0.97133 1.78011 1.04093 1.26980 1.09311 0.86851 0.87691 0.90060 0.86452 0.92992 0.90834 0.89461 0.92772 0.92510 0.94399 0.92763 0.94551 0.73910 0.73885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 8.59 71.98 0.62 -1.28 16 2 C 0.14 3.19 2.91 44.25 0.13 3.31 16 3 H 0.13 2.69 6.56 -2.38 -0.02 2.67 16 4 C 0.50 16.01 6.87 87.65 0.60 16.61 16 5 O -0.58 -23.45 15.89 -3.04 -0.05 -23.50 16 6 N -0.58 -20.05 2.24 -813.83 -1.82 -21.87 16 7 C 0.09 2.63 5.62 86.47 0.49 3.12 16 8 C 0.13 4.03 4.27 45.47 0.19 4.22 16 9 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 10 C -0.11 -2.94 6.18 31.56 0.20 -2.75 16 11 C -0.13 -4.39 6.21 31.70 0.20 -4.19 16 12 C 0.17 7.39 3.12 45.62 0.14 7.53 16 13 H 0.07 3.78 6.49 -2.39 -0.02 3.77 16 14 C 0.13 5.68 5.82 86.55 0.50 6.19 16 15 N -0.60 -26.82 2.80 -635.90 -1.78 -28.60 16 16 C -0.23 -11.66 10.36 84.03 0.87 -10.79 16 17 H 0.08 3.97 7.85 -2.91 -0.02 3.95 16 18 C -0.06 -2.92 5.41 84.86 0.46 -2.46 16 19 N -0.94 -53.16 10.37 21.65 0.22 -52.94 16 20 Si 0.97 43.52 29.56 68.60 2.03 45.55 16 21 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 22 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 23 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 24 N -0.37 -9.67 3.30 -335.01 -1.11 -10.78 16 25 C 0.28 6.60 11.48 180.36 2.07 8.67 16 26 N -0.57 -15.35 11.19 -204.00 -2.28 -17.63 16 27 C 0.20 5.02 13.03 180.77 2.36 7.37 16 28 N -0.36 -10.53 12.70 -61.25 -0.78 -11.31 16 29 H 0.11 1.01 5.79 -2.39 -0.01 0.99 16 30 H 0.10 0.84 8.14 -2.39 -0.02 0.83 16 31 H 0.08 0.98 7.53 -2.39 -0.02 0.96 16 32 H 0.12 2.11 5.15 -2.39 -0.01 2.10 16 33 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.09 1.72 6.24 -2.38 -0.01 1.71 16 36 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.06 1.90 7.85 -2.39 -0.02 1.88 16 38 H 0.04 1.99 7.69 -2.39 -0.02 1.97 16 39 H 0.05 2.49 7.08 -2.39 -0.02 2.48 16 40 H 0.25 13.88 8.31 -92.70 -0.77 13.11 16 41 H 0.25 3.84 7.50 -2.91 -0.02 3.82 16 42 H 0.25 4.17 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -73.61 332.05 4.30 -69.31 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 1.04 Total: 16.20 kcal Atomic # 6 Polarization: 26.74 SS G_CDS: 8.82 Total: 35.56 kcal Atomic # 7 Polarization: -135.58 SS G_CDS: -7.54 Total: -143.12 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.05 Total: -23.50 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -73.61 4.30 -69.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029278318.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.031 kcal (2) G-P(sol) polarization free energy of solvation -73.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds