Wall clock time and date at job start Tue Mar 31 2020 09:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46760 * 2 1 4 4 C 1.50701 * 109.47237 * 240.00238 * 2 1 3 5 5 O 1.21278 * 120.00080 * 249.32220 * 4 2 1 6 6 N 1.34775 * 120.00148 * 69.32066 * 4 2 1 7 7 C 1.47171 * 120.70632 * 3.82868 * 6 4 2 8 8 C 1.53882 * 108.03159 * 132.73760 * 7 6 4 9 9 H 1.08991 * 112.09862 * 181.90474 * 8 7 6 10 10 C 1.54547 * 108.36852 * 306.24946 * 8 7 6 11 11 C 1.54828 * 104.74542 * 89.17193 * 10 8 7 12 12 C 1.54546 * 104.74416 * 0.02562 * 11 10 8 13 13 H 1.09004 * 112.68096 * 146.81111 * 12 11 10 14 14 C 1.47164 * 120.70980 * 183.80686 * 6 4 2 15 15 N 1.48309 * 107.21028 * 58.35374 * 8 7 6 16 16 C 1.36936 * 128.07836 * 106.09779 * 15 8 7 17 17 H 1.07991 * 120.00530 * 165.42434 * 16 15 8 18 18 C 1.38816 * 119.99841 * 345.42541 * 16 15 8 19 19 N 1.31619 * 120.00056 * 350.94544 * 18 16 15 20 20 Si 1.86799 * 120.00190 * 170.94323 * 18 16 15 21 21 H 1.48502 * 109.46890 * 270.00080 * 20 18 16 22 22 H 1.48496 * 109.47156 * 29.99956 * 20 18 16 23 23 H 1.48500 * 109.47070 * 150.00023 * 20 18 16 24 24 N 1.46502 * 109.47205 * 120.00374 * 2 1 3 25 25 C 1.34420 * 126.82476 * 34.99540 * 24 2 1 26 26 N 1.30834 * 108.07959 * 179.97438 * 25 24 2 27 27 C 1.33237 * 109.82792 * 0.02562 * 26 25 24 28 28 N 1.30716 * 108.94889 * 359.75330 * 27 26 25 29 29 H 1.08997 * 109.46872 * 293.36694 * 1 2 3 30 30 H 1.08994 * 109.47259 * 53.36856 * 1 2 3 31 31 H 1.08998 * 109.46815 * 173.36637 * 1 2 3 32 32 H 1.08991 * 109.75140 * 13.10211 * 7 6 4 33 33 H 1.09005 * 109.78793 * 252.39211 * 7 6 4 34 34 H 1.08998 * 110.36814 * 208.14207 * 10 8 7 35 35 H 1.09002 * 110.36312 * 330.45291 * 10 8 7 36 36 H 1.09000 * 110.30667 * 241.24718 * 11 10 8 37 37 H 1.09002 * 110.61173 * 118.91235 * 11 10 8 38 38 H 1.08996 * 109.75103 * 346.89732 * 14 6 4 39 39 H 1.08999 * 109.75045 * 107.58290 * 14 6 4 40 40 H 0.96996 * 120.00527 * 180.02562 * 19 18 16 41 41 H 1.08004 * 125.96431 * 0.02562 * 25 24 2 42 42 H 1.07999 * 125.53159 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.5842 -1.7854 -1.1273 6 7 1.8684 -0.1510 -2.4457 7 6 1.2769 1.1896 -2.5823 8 6 2.1605 2.0045 -3.5431 9 1 1.7990 3.0253 -3.6665 10 6 3.6153 1.9596 -3.0234 11 6 4.2322 0.7041 -3.6869 12 6 3.0910 0.1114 -4.5443 13 1 3.4536 -0.3646 -5.4554 14 6 2.2776 -0.8676 -3.6642 15 7 2.2065 1.2671 -4.8290 16 6 1.5751 1.5776 -6.0037 17 1 1.8751 1.0950 -6.9221 18 6 0.5494 2.5128 -6.0142 19 7 0.0628 2.9687 -4.8794 20 14 -0.1405 3.1245 -7.6388 21 1 0.6201 4.3211 -8.0804 22 1 -0.0189 2.0553 -8.6621 23 1 -1.5710 3.4834 -7.4654 24 7 2.0184 -0.6907 1.1961 25 6 1.4559 -1.7519 1.7998 26 7 2.1939 -2.0701 2.8322 27 6 3.2311 -1.2383 2.9199 28 7 3.1701 -0.3786 1.9370 29 1 -0.3633 0.4076 0.9434 30 1 -0.3633 0.6131 -0.8246 31 1 -0.3633 -1.0208 -0.1187 32 1 1.2434 1.6784 -1.6087 33 1 0.2686 1.1085 -2.9885 34 1 4.1547 2.8565 -3.3276 35 1 3.6274 1.8585 -1.9381 36 1 4.5457 -0.0106 -2.9259 37 1 5.0768 0.9796 -4.3184 38 1 2.8980 -1.7231 -3.3977 39 1 1.3947 -1.2074 -4.2057 40 1 -0.6542 3.6219 -4.8866 41 1 0.5528 -2.2547 1.4868 42 1 3.9998 -1.2713 3.6778 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029278319.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:32:03 Heat of formation + Delta-G solvation = 104.488745 kcal Electronic energy + Delta-G solvation = -26502.073162 eV Core-core repulsion = 22906.662962 eV Total energy + Delta-G solvation = -3595.410200 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.07179 -40.23842 -38.08161 -35.02612 -33.89314 -32.55081 -31.31261 -30.82284 -29.80195 -29.33643 -26.60398 -25.05639 -24.05738 -23.74284 -22.03727 -21.69314 -19.93422 -19.75466 -18.80200 -17.62593 -17.10103 -16.16929 -15.77085 -15.62781 -14.92217 -14.90106 -14.57067 -14.20458 -14.06681 -13.76480 -13.33958 -13.14759 -12.94681 -12.72769 -12.44521 -12.33081 -11.88377 -11.84034 -11.71899 -11.54835 -11.17981 -10.97485 -10.88412 -10.48331 -10.25507 -10.12876 -9.98139 -9.95436 -9.72842 -9.70870 -9.69442 -9.30168 -8.89174 -8.26756 -6.98640 -5.97677 -3.32002 1.65411 2.19244 2.74005 3.03461 3.28199 3.34636 3.35523 3.39054 4.31018 4.33962 4.38689 4.52304 4.68885 4.84900 5.06292 5.21400 5.22138 5.34588 5.43747 5.55636 5.59871 5.68769 5.71178 5.80467 5.82913 5.97122 6.16683 6.23652 6.27105 6.42959 6.45641 6.49052 6.49753 6.58826 6.73795 6.76830 6.83643 7.08634 7.32481 7.53354 7.80610 8.00258 8.12234 8.36645 8.93481 9.55250 10.30879 11.15813 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.026834 B = 0.004161 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.219067 B = 6727.770019 C = 7095.865381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.139 3.861 3 H 0.128 0.872 4 C 0.498 3.502 5 O -0.549 6.549 6 N -0.581 5.581 7 C 0.098 3.902 8 C 0.166 3.834 9 H 0.123 0.877 10 C -0.136 4.136 11 C -0.124 4.124 12 C 0.135 3.865 13 H 0.080 0.920 14 C 0.102 3.898 15 N -0.584 5.584 16 C -0.224 4.224 17 H 0.078 0.922 18 C -0.002 4.002 19 N -0.918 5.918 20 Si 0.913 3.087 21 H -0.288 1.288 22 H -0.281 1.281 23 H -0.291 1.291 24 N -0.356 5.356 25 C 0.271 3.729 26 N -0.552 5.552 27 C 0.194 3.806 28 N -0.316 5.316 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.090 0.910 34 H 0.057 0.943 35 H 0.048 0.952 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.255 0.745 41 H 0.213 0.787 42 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.784 -3.413 9.393 10.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.032 3.968 3 H 0.145 0.855 4 C 0.283 3.717 5 O -0.427 6.427 6 N -0.313 5.313 7 C -0.025 4.025 8 C 0.058 3.942 9 H 0.140 0.860 10 C -0.175 4.175 11 C -0.163 4.163 12 C 0.026 3.974 13 H 0.098 0.902 14 C -0.022 4.022 15 N -0.305 5.305 16 C -0.352 4.352 17 H 0.095 0.905 18 C -0.199 4.199 19 N -0.564 5.564 20 Si 0.744 3.256 21 H -0.215 1.215 22 H -0.207 1.207 23 H -0.217 1.217 24 N -0.146 5.146 25 C -0.026 4.026 26 N -0.279 5.279 27 C -0.109 4.109 28 N -0.143 5.143 29 H 0.097 0.903 30 H 0.120 0.880 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.108 0.892 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.065 0.935 41 H 0.229 0.771 42 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 1.301 -3.467 9.308 10.018 hybrid contribution -0.592 0.310 -0.984 1.189 sum 0.709 -3.157 8.325 8.932 Atomic orbital electron populations 1.22217 0.90026 1.04659 1.05220 1.21265 0.96529 0.97906 0.81127 0.85451 1.20362 0.80499 0.86183 0.84651 1.90699 1.43819 1.22221 1.85996 1.48168 1.59557 1.18697 1.04860 1.22809 0.99822 0.80572 0.99324 1.21892 0.89774 0.98173 0.84320 0.85955 1.22730 0.99213 0.97331 0.98212 1.22544 0.97849 0.97399 0.98474 1.22147 0.90725 0.89442 0.95075 0.90229 1.22588 0.99588 0.95247 0.84789 1.45184 1.53944 1.22752 1.08594 1.19046 1.10995 1.20554 0.84642 0.90459 1.24791 0.97113 1.00811 0.97183 1.69780 1.28808 1.33966 1.23874 0.86103 0.78010 0.78848 0.82679 1.21546 1.20656 1.21682 1.50106 1.18519 1.24381 1.21564 1.25821 0.99161 0.87838 0.89756 1.70541 1.07396 1.28829 1.21154 1.25926 0.97365 0.90431 0.97178 1.78041 1.02767 1.25468 1.08013 0.90261 0.88037 0.90927 0.92271 0.89204 0.92459 0.93299 0.92726 0.92524 0.90706 0.91548 0.93461 0.77100 0.76869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 8.43 37.16 0.31 -1.35 16 2 C 0.14 1.87 2.92 -69.08 -0.20 1.67 16 3 H 0.13 1.67 6.91 -51.93 -0.36 1.31 16 4 C 0.50 8.39 7.04 -10.99 -0.08 8.31 16 5 O -0.55 -11.02 15.81 5.56 0.09 -10.93 16 6 N -0.58 -10.01 2.28 -170.99 -0.39 -10.40 16 7 C 0.10 1.72 4.41 -3.22 -0.01 1.71 16 8 C 0.17 3.35 3.09 -65.66 -0.20 3.14 16 9 H 0.12 2.81 6.32 -51.93 -0.33 2.48 16 10 C -0.14 -2.43 6.23 -24.96 -0.16 -2.58 16 11 C -0.12 -2.18 6.24 -24.96 -0.16 -2.34 16 12 C 0.13 2.56 4.32 -65.22 -0.28 2.27 16 13 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 14 C 0.10 1.86 5.98 -2.76 -0.02 1.84 16 15 N -0.58 -12.93 2.79 -152.12 -0.42 -13.35 16 16 C -0.22 -5.54 10.37 -15.06 -0.16 -5.69 16 17 H 0.08 1.89 7.84 -52.49 -0.41 1.48 16 18 C 0.00 -0.05 5.42 -17.43 -0.09 -0.15 16 19 N -0.92 -23.01 10.36 55.49 0.57 -22.43 16 20 Si 0.91 20.17 29.56 -169.99 -5.03 15.14 16 21 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 24 N -0.36 -5.19 3.09 -57.24 -0.18 -5.36 16 25 C 0.27 3.63 11.67 -90.66 -1.06 2.57 16 26 N -0.55 -7.98 11.19 -15.83 -0.18 -8.16 16 27 C 0.19 2.65 13.03 -91.81 -1.20 1.46 16 28 N -0.32 -4.95 12.70 29.29 0.37 -4.57 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.10 1.07 6.31 -51.93 -0.33 0.74 16 31 H 0.07 0.69 7.57 -51.93 -0.39 0.30 16 32 H 0.06 0.87 5.33 -51.93 -0.28 0.60 16 33 H 0.09 1.80 7.77 -51.93 -0.40 1.39 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.05 0.82 7.86 -51.93 -0.41 0.41 16 36 H 0.05 0.97 7.87 -51.93 -0.41 0.56 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.07 1.36 7.09 -51.93 -0.37 0.99 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.26 6.31 8.31 -40.82 -0.34 5.97 16 41 H 0.21 2.05 7.51 -52.48 -0.39 1.66 16 42 H 0.21 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 333.73 15.07 5.03 5.03 Total: -1.00 -30.19 333.73 -9.18 -39.37 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -5.75 Total: 4.80 kcal Atomic # 6 Polarization: 14.16 SS G_CDS: -3.30 Total: 10.87 kcal Atomic # 7 Polarization: -64.06 SS G_CDS: -0.22 Total: -64.28 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.03 Total: 15.14 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.19 -9.18 -39.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029278319.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.859 kcal (2) G-P(sol) polarization free energy of solvation -30.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds