Wall clock time and date at job start Tue Mar 31 2020 09:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46760 * 2 1 4 4 C 1.50701 * 109.47237 * 240.00238 * 2 1 3 5 5 O 1.21278 * 120.00080 * 249.32220 * 4 2 1 6 6 N 1.34775 * 120.00148 * 69.32066 * 4 2 1 7 7 C 1.47171 * 120.70632 * 3.82868 * 6 4 2 8 8 C 1.53882 * 108.03159 * 132.73760 * 7 6 4 9 9 H 1.08991 * 112.09862 * 181.90474 * 8 7 6 10 10 C 1.54547 * 108.36852 * 306.24946 * 8 7 6 11 11 C 1.54828 * 104.74542 * 89.17193 * 10 8 7 12 12 C 1.54546 * 104.74416 * 0.02562 * 11 10 8 13 13 H 1.09004 * 112.68096 * 146.81111 * 12 11 10 14 14 C 1.47164 * 120.70980 * 183.80686 * 6 4 2 15 15 N 1.48309 * 107.21028 * 58.35374 * 8 7 6 16 16 C 1.36936 * 128.07836 * 106.09779 * 15 8 7 17 17 H 1.07991 * 120.00530 * 165.42434 * 16 15 8 18 18 C 1.38816 * 119.99841 * 345.42541 * 16 15 8 19 19 N 1.31619 * 120.00056 * 350.94544 * 18 16 15 20 20 Si 1.86799 * 120.00190 * 170.94323 * 18 16 15 21 21 H 1.48502 * 109.46890 * 270.00080 * 20 18 16 22 22 H 1.48496 * 109.47156 * 29.99956 * 20 18 16 23 23 H 1.48500 * 109.47070 * 150.00023 * 20 18 16 24 24 N 1.46502 * 109.47205 * 120.00374 * 2 1 3 25 25 C 1.34420 * 126.82476 * 34.99540 * 24 2 1 26 26 N 1.30834 * 108.07959 * 179.97438 * 25 24 2 27 27 C 1.33237 * 109.82792 * 0.02562 * 26 25 24 28 28 N 1.30716 * 108.94889 * 359.75330 * 27 26 25 29 29 H 1.08997 * 109.46872 * 293.36694 * 1 2 3 30 30 H 1.08994 * 109.47259 * 53.36856 * 1 2 3 31 31 H 1.08998 * 109.46815 * 173.36637 * 1 2 3 32 32 H 1.08991 * 109.75140 * 13.10211 * 7 6 4 33 33 H 1.09005 * 109.78793 * 252.39211 * 7 6 4 34 34 H 1.08998 * 110.36814 * 208.14207 * 10 8 7 35 35 H 1.09002 * 110.36312 * 330.45291 * 10 8 7 36 36 H 1.09000 * 110.30667 * 241.24718 * 11 10 8 37 37 H 1.09002 * 110.61173 * 118.91235 * 11 10 8 38 38 H 1.08996 * 109.75103 * 346.89732 * 14 6 4 39 39 H 1.08999 * 109.75045 * 107.58290 * 14 6 4 40 40 H 0.96996 * 120.00527 * 180.02562 * 19 18 16 41 41 H 1.08004 * 125.96431 * 0.02562 * 25 24 2 42 42 H 1.07999 * 125.53159 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.5842 -1.7854 -1.1273 6 7 1.8684 -0.1510 -2.4457 7 6 1.2769 1.1896 -2.5823 8 6 2.1605 2.0045 -3.5431 9 1 1.7990 3.0253 -3.6665 10 6 3.6153 1.9596 -3.0234 11 6 4.2322 0.7041 -3.6869 12 6 3.0910 0.1114 -4.5443 13 1 3.4536 -0.3646 -5.4554 14 6 2.2776 -0.8676 -3.6642 15 7 2.2065 1.2671 -4.8290 16 6 1.5751 1.5776 -6.0037 17 1 1.8751 1.0950 -6.9221 18 6 0.5494 2.5128 -6.0142 19 7 0.0628 2.9687 -4.8794 20 14 -0.1405 3.1245 -7.6388 21 1 0.6201 4.3211 -8.0804 22 1 -0.0189 2.0553 -8.6621 23 1 -1.5710 3.4834 -7.4654 24 7 2.0184 -0.6907 1.1961 25 6 1.4559 -1.7519 1.7998 26 7 2.1939 -2.0701 2.8322 27 6 3.2311 -1.2383 2.9199 28 7 3.1701 -0.3786 1.9370 29 1 -0.3633 0.4076 0.9434 30 1 -0.3633 0.6131 -0.8246 31 1 -0.3633 -1.0208 -0.1187 32 1 1.2434 1.6784 -1.6087 33 1 0.2686 1.1085 -2.9885 34 1 4.1547 2.8565 -3.3276 35 1 3.6274 1.8585 -1.9381 36 1 4.5457 -0.0106 -2.9259 37 1 5.0768 0.9796 -4.3184 38 1 2.8980 -1.7231 -3.3977 39 1 1.3947 -1.2074 -4.2057 40 1 -0.6542 3.6219 -4.8866 41 1 0.5528 -2.2547 1.4868 42 1 3.9998 -1.2713 3.6778 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029278319.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:32:02 Heat of formation + Delta-G solvation = 88.816267 kcal Electronic energy + Delta-G solvation = -26502.752772 eV Core-core repulsion = 22906.662962 eV Total energy + Delta-G solvation = -3596.089810 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.12285 -41.65281 -39.54267 -36.17887 -35.41389 -34.23635 -32.42448 -32.22327 -31.07439 -30.83059 -28.04661 -26.29321 -25.49797 -25.30685 -23.17813 -22.76104 -21.40090 -21.14658 -20.34395 -19.02658 -18.25513 -17.70801 -17.18819 -16.88427 -16.49427 -16.04205 -15.89579 -15.62076 -15.32366 -15.05762 -14.72873 -14.60806 -14.45021 -13.85453 -13.56227 -13.46218 -13.33234 -13.27720 -13.12263 -12.91138 -12.71827 -12.58078 -12.50821 -12.00195 -11.86474 -11.52313 -11.49286 -11.40936 -11.18130 -11.04338 -10.78796 -10.75705 -10.42929 -9.80679 -8.71664 -7.84666 -5.18619 0.60074 1.16185 1.42369 1.51499 1.54341 1.59749 1.99368 2.08467 2.52258 3.22591 3.35450 3.39798 3.46481 3.50302 3.72487 3.94268 4.05544 4.06301 4.17739 4.26845 4.28750 4.37668 4.48073 4.55925 4.59811 4.68973 4.77394 4.91964 4.97022 5.01191 5.03892 5.10778 5.21243 5.28381 5.30414 5.49312 5.55006 5.59111 5.78208 5.81423 6.23508 6.42531 6.99312 7.09749 7.09838 7.72598 8.51385 9.26812 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.026834 B = 0.004161 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.219067 B = 6727.770019 C = 7095.865381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.144 3.856 3 H 0.134 0.866 4 C 0.501 3.499 5 O -0.581 6.581 6 N -0.580 5.580 7 C 0.114 3.886 8 C 0.161 3.839 9 H 0.094 0.906 10 C -0.128 4.128 11 C -0.114 4.114 12 C 0.131 3.869 13 H 0.083 0.917 14 C 0.109 3.891 15 N -0.602 5.602 16 C -0.236 4.236 17 H 0.073 0.927 18 C -0.043 4.043 19 N -0.929 5.929 20 Si 0.966 3.034 21 H -0.292 1.292 22 H -0.278 1.278 23 H -0.295 1.295 24 N -0.365 5.365 25 C 0.271 3.729 26 N -0.571 5.571 27 C 0.195 3.805 28 N -0.351 5.351 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.054 0.946 40 H 0.251 0.749 41 H 0.243 0.757 42 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.703 -3.619 10.527 11.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.037 3.963 3 H 0.151 0.849 4 C 0.288 3.712 5 O -0.461 6.461 6 N -0.311 5.311 7 C -0.009 4.009 8 C 0.054 3.946 9 H 0.112 0.888 10 C -0.167 4.167 11 C -0.153 4.153 12 C 0.024 3.976 13 H 0.101 0.899 14 C -0.016 4.016 15 N -0.324 5.324 16 C -0.365 4.365 17 H 0.090 0.910 18 C -0.238 4.238 19 N -0.577 5.577 20 Si 0.796 3.204 21 H -0.220 1.220 22 H -0.203 1.203 23 H -0.222 1.222 24 N -0.155 5.155 25 C -0.025 4.025 26 N -0.299 5.299 27 C -0.107 4.107 28 N -0.178 5.178 29 H 0.121 0.879 30 H 0.117 0.883 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.072 0.928 40 H 0.060 0.940 41 H 0.259 0.741 42 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 1.231 -3.676 10.454 11.149 hybrid contribution -0.525 0.317 -1.321 1.456 sum 0.706 -3.359 9.132 9.756 Atomic orbital electron populations 1.22238 0.87372 1.05463 1.06385 1.21318 0.98372 0.97304 0.79261 0.84887 1.20910 0.79410 0.85742 0.85165 1.90684 1.45182 1.23783 1.86492 1.48121 1.59561 1.18477 1.04962 1.22514 0.97761 0.80523 1.00103 1.21858 0.91454 0.97007 0.84327 0.88816 1.22647 0.97591 0.97491 0.98948 1.22449 0.97463 0.97101 0.98287 1.22275 0.90763 0.88902 0.95703 0.89929 1.22385 0.98920 0.95127 0.85146 1.45322 1.54284 1.24117 1.08653 1.19227 1.11117 1.20501 0.85612 0.90952 1.25340 0.97736 1.01364 0.99377 1.69906 1.28901 1.34116 1.24741 0.85284 0.76879 0.78045 0.80221 1.21983 1.20340 1.22181 1.50170 1.18590 1.24976 1.21746 1.26498 0.99658 0.87216 0.89110 1.70585 1.08029 1.29392 1.21921 1.26619 0.97567 0.89406 0.97134 1.77991 1.03844 1.26864 1.09080 0.87928 0.88292 0.90039 0.89187 0.91640 0.92347 0.91895 0.92593 0.91663 0.90522 0.92812 0.93984 0.74123 0.73795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 8.43 71.98 0.61 -2.16 16 2 C 0.14 3.57 2.92 44.25 0.13 3.70 16 3 H 0.13 3.15 6.91 -2.39 -0.02 3.13 16 4 C 0.50 16.07 7.04 87.66 0.62 16.69 16 5 O -0.58 -22.59 15.81 -3.02 -0.05 -22.64 16 6 N -0.58 -19.36 2.28 -813.29 -1.86 -21.22 16 7 C 0.11 3.91 4.41 86.55 0.38 4.29 16 8 C 0.16 6.42 3.09 45.47 0.14 6.56 16 9 H 0.09 4.33 6.32 -2.39 -0.02 4.32 16 10 C -0.13 -4.40 6.23 31.74 0.20 -4.20 16 11 C -0.11 -3.87 6.24 31.74 0.20 -3.68 16 12 C 0.13 4.92 4.32 45.77 0.20 5.12 16 13 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 14 C 0.11 3.92 5.98 86.85 0.52 4.44 16 15 N -0.60 -26.66 2.79 -635.18 -1.77 -28.43 16 16 C -0.24 -11.71 10.37 84.03 0.87 -10.83 16 17 H 0.07 3.56 7.84 -2.91 -0.02 3.54 16 18 C -0.04 -2.15 5.42 84.86 0.46 -1.69 16 19 N -0.93 -46.93 10.36 21.65 0.22 -46.71 16 20 Si 0.97 41.64 29.56 68.60 2.03 43.67 16 21 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 22 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 23 H -0.30 -12.86 7.11 99.48 0.71 -12.15 16 24 N -0.37 -9.86 3.09 -335.01 -1.04 -10.90 16 25 C 0.27 6.62 11.67 180.36 2.10 8.73 16 26 N -0.57 -15.36 11.19 -204.01 -2.28 -17.65 16 27 C 0.20 4.96 13.03 180.77 2.36 7.32 16 28 N -0.35 -10.36 12.70 -61.25 -0.78 -11.14 16 29 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.10 1.85 6.31 -2.39 -0.02 1.84 16 31 H 0.08 1.31 7.57 -2.39 -0.02 1.29 16 32 H 0.09 2.49 5.33 -2.39 -0.01 2.48 16 33 H 0.07 2.60 7.77 -2.38 -0.02 2.58 16 34 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.06 1.98 7.86 -2.39 -0.02 1.96 16 36 H 0.06 1.90 7.87 -2.39 -0.02 1.88 16 37 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.08 2.74 7.09 -2.39 -0.02 2.72 16 39 H 0.05 2.05 8.14 -2.39 -0.02 2.04 16 40 H 0.25 12.49 8.31 -92.71 -0.77 11.72 16 41 H 0.24 3.97 7.51 -2.91 -0.02 3.95 16 42 H 0.25 4.09 8.06 -2.91 -0.02 4.06 16 Total: -1.00 -64.31 333.73 4.29 -60.01 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: 1.03 Total: 20.71 kcal Atomic # 6 Polarization: 25.51 SS G_CDS: 8.78 Total: 34.29 kcal Atomic # 7 Polarization: -128.55 SS G_CDS: -7.50 Total: -136.05 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.05 Total: -22.64 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -64.31 4.29 -60.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029278319.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.830 kcal (2) G-P(sol) polarization free energy of solvation -64.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds