Wall clock time and date at job start Tue Mar 31 2020 09:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.46712 * 2 1 4 4 N 1.28709 * 126.03571 * 275.28836 * 3 2 1 5 5 N 1.28518 * 110.63660 * 179.78212 * 4 3 2 6 6 C 1.33319 * 109.43996 * 0.39343 * 5 4 3 7 7 C 1.50701 * 126.81441 * 179.88240 * 6 5 4 8 8 C 1.37010 * 106.36854 * 359.62287 * 6 5 4 9 9 C 1.47237 * 127.18629 * 180.20454 * 8 6 5 10 10 O 1.21624 * 119.99642 * 84.14797 * 9 8 6 11 11 N 1.34775 * 120.00200 * 264.15182 * 9 8 6 12 12 C 1.47865 * 126.94011 * 355.44426 * 11 9 8 13 13 C 1.56026 * 105.10036 * 181.98580 * 12 11 9 14 14 H 1.08997 * 116.24994 * 158.83801 * 13 12 11 15 15 C 1.57078 * 99.60681 * 32.80634 * 13 12 11 16 16 C 1.49281 * 126.94451 * 175.13701 * 11 9 8 17 17 H 1.09003 * 116.15722 * 16.72301 * 16 11 9 18 18 C 1.56014 * 104.09352 * 246.71522 * 16 11 9 19 19 N 1.47361 * 105.15083 * 288.60864 * 18 16 11 20 20 C 1.36935 * 126.79459 * 182.06115 * 19 18 16 21 21 H 1.07995 * 119.99941 * 180.28238 * 20 19 18 22 22 C 1.38810 * 119.99822 * 0.28369 * 20 19 18 23 23 N 1.31617 * 120.00129 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00132 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47374 * 59.99344 * 24 22 20 26 26 H 1.48496 * 109.47199 * 180.02562 * 24 22 20 27 27 H 1.48508 * 109.46916 * 299.99567 * 24 22 20 28 28 H 1.09001 * 109.47219 * 184.91788 * 1 2 3 29 29 H 1.09001 * 109.47510 * 304.91739 * 1 2 3 30 30 H 1.09007 * 109.47413 * 64.92123 * 1 2 3 31 31 H 1.08997 * 109.47231 * 240.00233 * 2 1 3 32 32 H 1.08993 * 109.47045 * 119.99852 * 2 1 3 33 33 H 1.08996 * 109.46909 * 269.68665 * 7 6 5 34 34 H 1.08998 * 109.46575 * 29.68506 * 7 6 5 35 35 H 1.08997 * 109.47120 * 149.68597 * 7 6 5 36 36 H 1.09001 * 110.32078 * 300.89037 * 12 11 9 37 37 H 1.09004 * 110.31581 * 63.08201 * 12 11 9 38 38 H 1.08998 * 112.37073 * 64.27516 * 15 13 12 39 39 H 1.08997 * 112.36816 * 191.63000 * 15 13 12 40 40 H 1.09001 * 110.31631 * 47.67398 * 18 16 11 41 41 H 1.09003 * 110.31908 * 169.75653 * 18 16 11 42 42 H 0.97004 * 119.99957 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 7 2.1801 2.1272 -1.0364 5 7 2.6184 3.2864 -0.6961 6 6 2.7703 3.3324 0.6276 7 6 3.2634 4.5021 1.4399 8 6 2.3837 2.1071 1.1034 9 6 2.3651 1.6629 2.5070 10 8 1.4110 1.9236 3.2147 11 7 3.4055 0.9676 3.0076 12 6 4.5925 0.4883 2.2676 13 6 5.4393 -0.2930 3.3196 14 1 6.1539 -1.0144 2.9236 15 6 4.2821 -0.8696 4.2116 16 6 3.5953 0.5312 4.4226 17 1 2.7070 0.5485 5.0541 18 6 4.8257 1.3558 4.9126 19 7 5.9837 0.7730 4.2120 20 6 7.2956 1.1406 4.3494 21 1 8.0600 0.6389 3.7747 22 6 7.6429 2.1581 5.2275 23 7 6.7112 2.7698 5.9275 24 14 9.4324 2.6601 5.4146 25 1 9.9564 3.1225 4.1043 26 1 9.5368 3.7604 6.4063 27 1 10.2268 1.4958 5.8824 28 1 -0.3634 -1.0239 0.0881 29 1 -0.3634 0.5882 0.8426 30 1 -0.3634 0.4356 -0.9308 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 4.3470 4.4429 1.5413 34 1 2.9957 5.4317 0.9376 35 1 2.8040 4.4776 2.4280 36 1 4.2907 -0.1748 1.4568 37 1 5.1605 1.3322 1.8759 38 1 3.6472 -1.5683 3.6668 39 1 4.6506 -1.2961 5.1445 40 1 4.7084 2.4060 4.6452 41 1 4.9459 1.2518 5.9910 42 1 6.9539 3.4811 6.5409 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032441109.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:32:22 Heat of formation + Delta-G solvation = 122.946761 kcal Electronic energy + Delta-G solvation = -26382.960930 eV Core-core repulsion = 22788.351130 eV Total energy + Delta-G solvation = -3594.609800 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.19814 -40.16992 -37.96015 -35.72741 -33.80827 -32.65253 -31.66665 -30.85574 -29.21323 -28.72702 -27.65879 -25.38226 -24.93682 -24.06400 -22.73480 -21.13958 -20.54249 -20.00360 -18.78780 -17.94745 -16.85310 -16.56909 -16.21099 -15.79827 -15.29798 -14.90525 -14.46314 -14.06576 -13.76723 -13.61846 -13.48222 -13.12196 -12.73875 -12.54133 -12.39325 -12.27318 -12.07974 -11.88656 -11.78825 -11.74319 -11.45373 -11.18493 -10.96797 -10.88393 -10.85958 -10.72178 -10.40998 -10.19471 -10.08197 -9.92992 -9.73521 -9.02935 -8.79293 -8.27846 -7.03672 -5.84965 -3.20267 1.34393 1.96425 2.49838 2.65674 3.15883 3.33599 3.38397 3.40064 4.18251 4.32907 4.35417 4.53506 4.63644 4.79724 4.92429 4.99817 5.02657 5.18545 5.22625 5.26355 5.43902 5.48932 5.55300 5.59308 5.72331 5.73232 5.81314 5.86541 5.99399 6.01481 6.08037 6.22579 6.29620 6.35717 6.43792 6.45291 6.52071 7.31391 7.34969 7.62122 7.73668 8.01330 8.17874 8.46388 9.02330 9.62543 10.29477 11.26898 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.018437 B = 0.004818 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.317425 B = 5810.579271 C = 6390.510829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.109 3.891 3 N -0.271 5.271 4 N -0.072 5.072 5 N -0.270 5.270 6 C 0.030 3.970 7 C -0.073 4.073 8 C -0.047 4.047 9 C 0.607 3.393 10 O -0.531 6.531 11 N -0.590 5.590 12 C 0.082 3.918 13 C 0.143 3.857 14 H 0.109 0.891 15 C -0.151 4.151 16 C 0.098 3.902 17 H 0.118 0.882 18 C 0.175 3.825 19 N -0.594 5.594 20 C -0.236 4.236 21 H 0.080 0.920 22 C -0.002 4.002 23 N -0.919 5.919 24 Si 0.913 3.087 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.284 1.284 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.048 0.952 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.088 0.912 40 H 0.049 0.951 41 H 0.060 0.940 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.050 -7.559 -8.361 14.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.011 4.011 3 N -0.069 5.069 4 N -0.051 5.051 5 N -0.135 5.135 6 C -0.110 4.110 7 C -0.132 4.132 8 C -0.182 4.182 9 C 0.390 3.610 10 O -0.407 6.407 11 N -0.323 5.323 12 C -0.043 4.043 13 C 0.034 3.966 14 H 0.126 0.874 15 C -0.191 4.191 16 C -0.004 4.004 17 H 0.136 0.864 18 C 0.050 3.950 19 N -0.318 5.318 20 C -0.364 4.364 21 H 0.098 0.902 22 C -0.199 4.199 23 N -0.565 5.565 24 Si 0.743 3.257 25 H -0.211 1.211 26 H -0.215 1.215 27 H -0.211 1.211 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.129 0.871 32 H 0.120 0.880 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.067 0.933 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.106 0.894 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.591 -7.123 -9.385 15.192 hybrid contribution 0.992 0.189 1.060 1.464 sum -8.599 -6.934 -8.325 13.832 Atomic orbital electron populations 1.22162 0.92626 1.03987 1.03985 1.22169 0.96802 0.76355 1.05798 1.47734 1.42119 1.13198 1.03876 1.78094 1.17240 0.98043 1.11678 1.74789 1.15789 1.10981 1.11976 1.22137 1.02548 0.95260 0.91020 1.20184 1.02048 0.92967 0.97961 1.21913 1.11221 0.94772 0.90247 1.16332 0.82275 0.78462 0.83898 1.90823 1.33780 1.56412 1.59728 1.49220 1.19385 1.51752 1.11961 1.23402 0.86451 0.99061 0.95380 1.23153 0.92472 0.90913 0.90055 0.87360 1.24237 0.98215 0.95173 1.01460 1.24594 0.99244 0.95243 0.81274 0.86400 1.21853 0.81782 0.94832 0.96570 1.45090 1.03083 1.37579 1.46048 1.18987 0.81662 1.15125 1.20608 0.90183 1.24803 0.97830 0.98441 0.98813 1.69886 1.30963 1.26475 1.29162 0.86195 0.84025 0.77959 0.77520 1.21083 1.21534 1.21077 0.89589 0.91181 0.91092 0.87149 0.87979 0.89696 0.90122 0.90293 0.93334 0.90765 0.91626 0.89367 0.93274 0.92172 0.93400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.46 10.24 37.16 0.38 -1.08 16 2 C 0.11 1.08 6.99 -4.04 -0.03 1.05 16 3 N -0.27 -3.90 3.39 -57.37 -0.19 -4.09 16 4 N -0.07 -1.15 13.14 60.35 0.79 -0.36 16 5 N -0.27 -4.71 12.35 33.51 0.41 -4.30 16 6 C 0.03 0.51 7.30 -82.39 -0.60 -0.09 16 7 C -0.07 -1.11 10.28 36.01 0.37 -0.74 16 8 C -0.05 -0.79 6.01 -82.33 -0.50 -1.28 16 9 C 0.61 10.79 6.91 -12.61 -0.09 10.70 16 10 O -0.53 -10.77 17.45 5.26 0.09 -10.67 16 11 N -0.59 -10.11 2.95 -157.88 -0.47 -10.58 16 12 C 0.08 1.34 5.99 -1.67 -0.01 1.33 16 13 C 0.14 2.45 5.53 -62.55 -0.35 2.11 16 14 H 0.11 1.66 8.14 -51.93 -0.42 1.23 16 15 C -0.15 -2.28 6.84 -22.10 -0.15 -2.43 16 16 C 0.10 1.73 5.26 -62.36 -0.33 1.40 16 17 H 0.12 1.98 8.04 -51.93 -0.42 1.56 16 18 C 0.17 3.90 4.74 -1.96 -0.01 3.89 16 19 N -0.59 -13.40 3.01 -156.74 -0.47 -13.87 16 20 C -0.24 -6.00 10.37 -15.06 -0.16 -6.15 16 21 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 22 C 0.00 -0.05 5.49 -17.43 -0.10 -0.14 16 23 N -0.92 -25.56 10.53 55.49 0.58 -24.97 16 24 Si 0.91 21.03 29.55 -169.99 -5.02 16.01 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 31 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.10 0.95 7.75 -51.93 -0.40 0.55 16 33 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.08 1.24 8.02 -51.93 -0.42 0.83 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.05 1.27 7.68 -51.93 -0.40 0.87 16 41 H 0.06 1.49 7.42 -51.93 -0.39 1.10 16 42 H 0.26 7.01 8.31 -40.82 -0.34 6.68 16 LS Contribution 350.25 15.07 5.28 5.28 Total: -1.00 -31.37 350.25 -6.77 -38.14 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -6.22 Total: 0.88 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: -1.56 Total: 8.54 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: 0.66 Total: -58.18 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.37 -6.77 -38.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032441109.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.088 kcal (2) G-P(sol) polarization free energy of solvation -31.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds