Wall clock time and date at job start Tue Mar 31 2020 09:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.46712 * 2 1 4 4 N 1.28709 * 126.03571 * 275.28836 * 3 2 1 5 5 N 1.28518 * 110.63660 * 179.78212 * 4 3 2 6 6 C 1.33319 * 109.43996 * 0.39343 * 5 4 3 7 7 C 1.50701 * 126.81441 * 179.88240 * 6 5 4 8 8 C 1.37010 * 106.36854 * 359.62287 * 6 5 4 9 9 C 1.47237 * 127.18629 * 180.20454 * 8 6 5 10 10 O 1.21624 * 119.99642 * 84.14797 * 9 8 6 11 11 N 1.34775 * 120.00200 * 264.15182 * 9 8 6 12 12 C 1.47865 * 126.94011 * 355.44426 * 11 9 8 13 13 C 1.56026 * 105.10036 * 181.98580 * 12 11 9 14 14 H 1.08997 * 116.24994 * 158.83801 * 13 12 11 15 15 C 1.57078 * 99.60681 * 32.80634 * 13 12 11 16 16 C 1.49281 * 126.94451 * 175.13701 * 11 9 8 17 17 H 1.09003 * 116.15722 * 16.72301 * 16 11 9 18 18 C 1.56014 * 104.09352 * 246.71522 * 16 11 9 19 19 N 1.47361 * 105.15083 * 288.60864 * 18 16 11 20 20 C 1.36935 * 126.79459 * 182.06115 * 19 18 16 21 21 H 1.07995 * 119.99941 * 180.28238 * 20 19 18 22 22 C 1.38810 * 119.99822 * 0.28369 * 20 19 18 23 23 N 1.31617 * 120.00129 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00132 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47374 * 59.99344 * 24 22 20 26 26 H 1.48496 * 109.47199 * 180.02562 * 24 22 20 27 27 H 1.48508 * 109.46916 * 299.99567 * 24 22 20 28 28 H 1.09001 * 109.47219 * 184.91788 * 1 2 3 29 29 H 1.09001 * 109.47510 * 304.91739 * 1 2 3 30 30 H 1.09007 * 109.47413 * 64.92123 * 1 2 3 31 31 H 1.08997 * 109.47231 * 240.00233 * 2 1 3 32 32 H 1.08993 * 109.47045 * 119.99852 * 2 1 3 33 33 H 1.08996 * 109.46909 * 269.68665 * 7 6 5 34 34 H 1.08998 * 109.46575 * 29.68506 * 7 6 5 35 35 H 1.08997 * 109.47120 * 149.68597 * 7 6 5 36 36 H 1.09001 * 110.32078 * 300.89037 * 12 11 9 37 37 H 1.09004 * 110.31581 * 63.08201 * 12 11 9 38 38 H 1.08998 * 112.37073 * 64.27516 * 15 13 12 39 39 H 1.08997 * 112.36816 * 191.63000 * 15 13 12 40 40 H 1.09001 * 110.31631 * 47.67398 * 18 16 11 41 41 H 1.09003 * 110.31908 * 169.75653 * 18 16 11 42 42 H 0.97004 * 119.99957 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 7 2.1801 2.1272 -1.0364 5 7 2.6184 3.2864 -0.6961 6 6 2.7703 3.3324 0.6276 7 6 3.2634 4.5021 1.4399 8 6 2.3837 2.1071 1.1034 9 6 2.3651 1.6629 2.5070 10 8 1.4110 1.9236 3.2147 11 7 3.4055 0.9676 3.0076 12 6 4.5925 0.4883 2.2676 13 6 5.4393 -0.2930 3.3196 14 1 6.1539 -1.0144 2.9236 15 6 4.2821 -0.8696 4.2116 16 6 3.5953 0.5312 4.4226 17 1 2.7070 0.5485 5.0541 18 6 4.8257 1.3558 4.9126 19 7 5.9837 0.7730 4.2120 20 6 7.2956 1.1406 4.3494 21 1 8.0600 0.6389 3.7747 22 6 7.6429 2.1581 5.2275 23 7 6.7112 2.7698 5.9275 24 14 9.4324 2.6601 5.4146 25 1 9.9564 3.1225 4.1043 26 1 9.5368 3.7604 6.4063 27 1 10.2268 1.4958 5.8824 28 1 -0.3634 -1.0239 0.0881 29 1 -0.3634 0.5882 0.8426 30 1 -0.3634 0.4356 -0.9308 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 4.3470 4.4429 1.5413 34 1 2.9957 5.4317 0.9376 35 1 2.8040 4.4776 2.4280 36 1 4.2907 -0.1748 1.4568 37 1 5.1605 1.3322 1.8759 38 1 3.6472 -1.5683 3.6668 39 1 4.6506 -1.2961 5.1445 40 1 4.7084 2.4060 4.6452 41 1 4.9459 1.2518 5.9910 42 1 6.9539 3.4811 6.5409 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032441109.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:32:21 Heat of formation + Delta-G solvation = 102.477673 kcal Electronic energy + Delta-G solvation = -26383.848536 eV Core-core repulsion = 22788.351130 eV Total energy + Delta-G solvation = -3595.497407 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.43092 -41.63126 -39.45741 -36.74640 -35.53837 -34.01214 -33.19092 -31.93803 -30.74794 -30.32676 -28.92554 -27.01333 -26.10848 -25.40960 -24.17409 -22.31381 -21.90014 -21.47618 -20.24886 -19.35800 -18.38517 -17.89540 -17.55268 -17.21006 -16.79496 -16.27847 -15.78708 -15.53928 -15.18036 -14.90785 -14.71304 -14.42528 -13.91947 -13.81312 -13.63519 -13.59968 -13.44774 -13.22436 -13.09592 -13.04162 -12.88340 -12.68152 -12.58212 -12.37339 -12.18174 -12.10916 -12.03093 -11.91818 -11.54865 -11.41733 -11.20259 -10.72651 -10.32035 -9.75322 -8.91051 -7.83591 -5.18841 0.10070 0.79379 1.18804 1.30490 1.49034 1.50577 1.56623 1.86015 2.49455 2.99193 3.25334 3.33917 3.41962 3.50286 3.71411 3.79520 3.81747 3.83543 3.98899 4.10994 4.18015 4.21051 4.42767 4.51200 4.55729 4.57088 4.60776 4.70153 4.72515 4.85339 4.87336 4.99796 5.07004 5.09102 5.10285 5.22309 5.36578 5.45531 5.50784 5.68110 6.12018 6.32786 6.75695 7.05730 7.20312 7.72536 8.40855 9.26891 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.018437 B = 0.004818 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.317425 B = 5810.579271 C = 6390.510829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.255 5.255 4 N -0.071 5.071 5 N -0.292 5.292 6 C 0.017 3.983 7 C -0.069 4.069 8 C -0.060 4.060 9 C 0.614 3.386 10 O -0.560 6.560 11 N -0.588 5.588 12 C 0.091 3.909 13 C 0.138 3.862 14 H 0.137 0.863 15 C -0.126 4.126 16 C 0.104 3.896 17 H 0.127 0.873 18 C 0.185 3.815 19 N -0.614 5.614 20 C -0.233 4.233 21 H 0.092 0.908 22 C -0.063 4.063 23 N -0.952 5.952 24 Si 0.972 3.028 25 H -0.280 1.280 26 H -0.302 1.302 27 H -0.274 1.274 28 H 0.119 0.881 29 H 0.043 0.957 30 H 0.068 0.932 31 H 0.142 0.858 32 H 0.114 0.886 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.044 0.956 38 H 0.109 0.891 39 H 0.087 0.913 40 H 0.000 1.000 41 H 0.025 0.975 42 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.358 -10.559 -10.232 17.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.024 4.024 3 N -0.054 5.054 4 N -0.050 5.050 5 N -0.157 5.157 6 C -0.123 4.123 7 C -0.128 4.128 8 C -0.194 4.194 9 C 0.398 3.602 10 O -0.438 6.438 11 N -0.319 5.319 12 C -0.034 4.034 13 C 0.031 3.969 14 H 0.154 0.846 15 C -0.165 4.165 16 C 0.002 3.998 17 H 0.144 0.856 18 C 0.059 3.941 19 N -0.338 5.338 20 C -0.362 4.362 21 H 0.110 0.890 22 C -0.256 4.256 23 N -0.601 5.601 24 Si 0.801 3.199 25 H -0.207 1.207 26 H -0.229 1.229 27 H -0.200 1.200 28 H 0.138 0.862 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.160 0.840 32 H 0.132 0.868 33 H 0.096 0.904 34 H 0.118 0.882 35 H 0.086 0.914 36 H 0.110 0.890 37 H 0.062 0.938 38 H 0.128 0.872 39 H 0.106 0.894 40 H 0.019 0.981 41 H 0.043 0.957 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -9.897 -10.185 -11.309 18.154 hybrid contribution 1.042 1.055 1.577 2.165 sum -8.855 -9.131 -9.731 16.015 Atomic orbital electron populations 1.22152 0.91668 1.05608 1.02709 1.22745 0.97619 0.74114 1.07935 1.48131 1.40427 1.14257 1.02556 1.78004 1.16985 0.97968 1.12055 1.74768 1.16946 1.11903 1.12052 1.22383 1.02815 0.95887 0.91252 1.20153 1.01387 0.93772 0.97468 1.21728 1.12335 0.95153 0.90215 1.16370 0.81907 0.77724 0.84153 1.90806 1.35025 1.57343 1.60619 1.49206 1.19434 1.51548 1.11750 1.23275 0.85687 0.98480 0.95938 1.23572 0.93489 0.90131 0.89717 0.84559 1.24148 0.97001 0.93886 1.01433 1.24466 0.97650 0.96180 0.81544 0.85567 1.21469 0.84443 0.93331 0.94812 1.45327 1.02330 1.39073 1.47105 1.19429 0.83380 1.14125 1.19228 0.89020 1.25552 1.01094 0.99378 0.99602 1.70112 1.32484 1.27194 1.30338 0.85254 0.80302 0.77334 0.77041 1.20660 1.22878 1.20019 0.86210 0.93792 0.91258 0.83993 0.86809 0.90401 0.88185 0.91437 0.89035 0.93754 0.87232 0.89405 0.98144 0.95667 0.94610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 10.24 71.98 0.74 -1.58 16 2 C 0.09 1.50 6.99 86.38 0.60 2.10 16 3 N -0.25 -6.75 3.39 -335.43 -1.14 -7.89 16 4 N -0.07 -2.17 13.14 37.02 0.49 -1.68 16 5 N -0.29 -9.99 12.35 -47.88 -0.59 -10.58 16 6 C 0.02 0.57 7.30 42.04 0.31 0.87 16 7 C -0.07 -2.18 10.28 71.24 0.73 -1.45 16 8 C -0.06 -1.93 6.01 40.41 0.24 -1.68 16 9 C 0.61 21.35 6.91 86.61 0.60 21.95 16 10 O -0.56 -22.62 17.45 -4.11 -0.07 -22.69 16 11 N -0.59 -19.28 2.95 -771.67 -2.27 -21.55 16 12 C 0.09 2.71 5.99 87.17 0.52 3.24 16 13 C 0.14 4.30 5.53 46.93 0.26 4.56 16 14 H 0.14 3.54 8.14 -2.39 -0.02 3.52 16 15 C -0.13 -3.32 6.84 33.59 0.23 -3.10 16 16 C 0.10 3.54 5.26 47.06 0.25 3.78 16 17 H 0.13 4.12 8.04 -2.39 -0.02 4.10 16 18 C 0.19 8.55 4.74 87.26 0.41 8.96 16 19 N -0.61 -27.58 3.01 -649.81 -1.95 -29.53 16 20 C -0.23 -11.82 10.37 84.03 0.87 -10.95 16 21 H 0.09 4.34 7.83 -2.91 -0.02 4.31 16 22 C -0.06 -3.41 5.49 84.86 0.47 -2.94 16 23 N -0.95 -55.59 10.53 21.65 0.23 -55.36 16 24 Si 0.97 44.02 29.55 68.60 2.03 46.05 16 25 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 26 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 27 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 28 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.14 1.41 8.14 -2.39 -0.02 1.40 16 32 H 0.11 1.59 7.75 -2.39 -0.02 1.57 16 33 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 35 H 0.07 2.24 8.02 -2.39 -0.02 2.22 16 36 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.00 0.02 7.68 -2.39 -0.02 0.00 16 41 H 0.03 1.32 7.42 -2.39 -0.02 1.30 16 42 H 0.24 14.19 8.31 -92.70 -0.77 13.42 16 Total: -1.00 -71.91 350.25 3.97 -67.94 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 1.02 Total: 11.54 kcal Atomic # 6 Polarization: 17.53 SS G_CDS: 6.23 Total: 23.76 kcal Atomic # 7 Polarization: -121.36 SS G_CDS: -5.24 Total: -126.60 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.07 Total: -22.69 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -71.91 3.97 -67.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032441109.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.420 kcal (2) G-P(sol) polarization free energy of solvation -71.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds