Wall clock time and date at job start Tue Mar 31 2020 08:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 N 1.46505 * 109.47212 * 179.97438 * 3 2 1 5 5 C 1.34813 * 126.59227 * 124.99910 * 4 3 2 6 6 C 1.36592 * 106.83967 * 179.97438 * 5 4 3 7 7 C 1.47524 * 125.77451 * 179.97438 * 6 5 4 8 8 O 1.21601 * 119.99426 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00127 * 180.02562 * 7 6 5 10 10 C 1.47870 * 126.94747 * 359.68802 * 9 7 6 11 11 C 1.55999 * 105.11439 * 181.87476 * 10 9 7 12 12 H 1.08997 * 116.81124 * 159.41656 * 11 10 9 13 13 C 1.57085 * 99.47418 * 33.16355 * 11 10 9 14 14 C 1.49294 * 126.94327 * 179.97438 * 9 7 6 15 15 H 1.09007 * 116.14977 * 15.84828 * 14 9 7 16 16 C 1.56019 * 104.09425 * 246.70028 * 14 9 7 17 17 N 1.47868 * 105.10362 * 288.76748 * 16 14 9 18 18 C 1.36932 * 126.94562 * 182.02458 * 17 16 14 19 19 H 1.08000 * 120.00151 * 179.97438 * 18 17 16 20 20 C 1.38817 * 119.99886 * 359.97438 * 18 17 16 21 21 N 1.31622 * 119.99686 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00084 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47219 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47257 * 119.99675 * 22 20 18 25 25 H 1.48493 * 109.47143 * 239.99864 * 22 20 18 26 26 N 1.34400 * 108.45830 * 0.02562 * 6 5 4 27 27 N 1.28770 * 109.52223 * 359.71010 * 26 6 5 28 28 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 30 30 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 31 31 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 32 32 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 33 33 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 34 34 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 35 35 H 1.08000 * 126.58023 * 0.02562 * 5 4 3 36 36 H 1.08993 * 110.31119 * 300.91034 * 10 9 7 37 37 H 1.09001 * 110.31237 * 63.09270 * 10 9 7 38 38 H 1.08997 * 112.36622 * 191.50805 * 13 11 10 39 39 H 1.08998 * 112.36474 * 64.07485 * 13 11 10 40 40 H 1.08998 * 110.31526 * 47.67649 * 16 14 9 41 41 H 1.09005 * 110.31208 * 169.76219 * 16 14 9 42 42 H 0.97001 * 119.99318 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.3091 2.0630 -0.8858 6 6 5.5945 1.7987 -0.5067 7 6 6.8110 2.2772 -1.1905 8 8 6.7165 2.9721 -2.1839 9 7 8.0269 1.9443 -0.7141 10 6 8.3192 1.1188 0.4774 11 6 9.8752 1.0989 0.5867 12 1 10.2965 0.8489 1.5604 13 6 10.1917 2.5346 0.0335 14 6 9.3510 2.3393 -1.2794 15 1 9.3424 3.1637 -1.9925 16 6 9.9644 0.9965 -1.7843 17 7 10.3147 0.2478 -0.5582 18 6 10.9202 -0.9783 -0.4873 19 1 11.1256 -1.4244 0.4747 20 6 11.2702 -1.6480 -1.6518 21 7 11.0195 -1.1045 -2.8241 22 14 12.0956 -3.3208 -1.5551 23 1 12.2645 -3.7080 -0.1314 24 1 11.2527 -4.3294 -2.2461 25 1 13.4263 -3.2549 -2.2108 26 7 5.5636 1.0281 0.5939 27 7 4.3404 0.8016 0.9265 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.9968 2.6562 -1.7326 36 1 7.8812 1.5705 1.3673 37 1 7.9385 0.1068 0.3392 38 1 11.2530 2.6758 -0.1708 39 1 9.7896 3.3224 0.6705 40 1 9.2311 0.4420 -2.3698 41 1 10.8568 1.1885 -2.3802 42 1 11.2637 -1.5727 -3.6378 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032705905.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:41:22 Heat of formation + Delta-G solvation = 121.144405 kcal Electronic energy + Delta-G solvation = -25227.502884 eV Core-core repulsion = 21632.814927 eV Total energy + Delta-G solvation = -3594.687956 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.12478 -39.82371 -37.64640 -36.19655 -33.58348 -32.79959 -31.56814 -30.59311 -28.91387 -28.44661 -27.21587 -25.12891 -24.12194 -23.03925 -22.59165 -21.59661 -20.43897 -19.72245 -18.69447 -17.69336 -16.68296 -16.29409 -15.99944 -15.67765 -15.43411 -14.77865 -14.65469 -14.41276 -13.90993 -13.82805 -13.33740 -13.10366 -12.89893 -12.51918 -12.27002 -12.10194 -11.89794 -11.77291 -11.52597 -11.37734 -11.22785 -11.05823 -10.93698 -10.81219 -10.62317 -10.52340 -10.35224 -10.13113 -9.98369 -9.67917 -9.54895 -9.19540 -8.64225 -7.90190 -6.83875 -5.69838 -3.03286 1.17504 1.94309 1.98164 3.39065 3.42161 3.47339 3.50037 3.67339 4.04127 4.28817 4.34758 4.48925 4.60546 4.74426 4.81640 4.93108 4.99994 5.13851 5.19097 5.31215 5.33661 5.44360 5.53697 5.58533 5.65692 5.74468 5.75447 5.84168 5.85977 6.20293 6.32855 6.35050 6.42578 6.51720 6.64578 6.70880 6.87009 7.49700 7.55550 7.78932 8.01350 8.13462 8.18095 8.59264 9.17834 9.78614 10.48361 11.42608 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.016755 B = 0.003714 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.705002 B = 7536.678020 C = 8392.993468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.139 4.139 3 C 0.123 3.877 4 N -0.366 5.366 5 C 0.085 3.915 6 C -0.086 4.086 7 C 0.612 3.388 8 O -0.558 6.558 9 N -0.589 5.589 10 C 0.097 3.903 11 C 0.137 3.863 12 H 0.107 0.893 13 C -0.151 4.151 14 C 0.098 3.902 15 H 0.115 0.885 16 C 0.175 3.825 17 N -0.598 5.598 18 C -0.226 4.226 19 H 0.081 0.919 20 C -0.008 4.008 21 N -0.921 5.921 22 Si 0.912 3.088 23 H -0.279 1.279 24 H -0.292 1.292 25 H -0.291 1.291 26 N -0.194 5.194 27 N -0.072 5.072 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.202 0.798 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.047 0.953 41 H 0.057 0.943 42 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.216 7.695 6.146 20.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.178 4.178 3 C 0.002 3.998 4 N -0.151 5.151 5 C -0.071 4.071 6 C -0.226 4.226 7 C 0.398 3.602 8 O -0.437 6.437 9 N -0.320 5.320 10 C -0.028 4.028 11 C 0.029 3.971 12 H 0.124 0.876 13 C -0.191 4.191 14 C -0.004 4.004 15 H 0.133 0.867 16 C 0.050 3.950 17 N -0.322 5.322 18 C -0.354 4.354 19 H 0.099 0.901 20 C -0.205 4.205 21 N -0.568 5.568 22 Si 0.743 3.257 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.218 1.218 26 N -0.067 5.067 27 N -0.052 5.052 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.121 0.879 35 H 0.219 0.781 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -18.222 6.976 6.682 20.624 hybrid contribution 0.051 -0.416 -1.009 1.093 sum -18.171 6.560 5.673 20.134 Atomic orbital electron populations 1.21698 0.93969 1.02820 1.02209 1.21836 0.96805 0.94710 1.04399 1.22090 0.72896 0.99952 1.04866 1.50537 1.08613 1.35686 1.20259 1.23315 0.90221 0.97545 0.96056 1.21554 0.94548 1.07460 0.99008 1.16325 0.80818 0.80033 0.83023 1.90758 1.86237 1.40597 1.26134 1.48978 1.04579 1.49414 1.29019 1.23270 0.98627 0.95051 0.85863 1.23242 0.90580 0.89813 0.93501 0.87563 1.24164 1.00077 0.98106 0.96739 1.24425 0.79801 0.99881 0.96270 0.86685 1.21919 0.97912 0.86619 0.88581 1.45233 1.69455 1.17883 0.99631 1.19108 1.30980 0.92305 0.92990 0.90091 1.24810 1.01501 0.98869 0.95304 1.69930 1.52235 1.38087 0.96526 0.86041 0.78721 0.83686 0.77284 1.20458 1.21890 1.21827 1.74801 1.12128 1.09431 1.10379 1.81963 0.93643 1.17720 1.11875 0.91674 0.92158 0.92286 0.90953 0.89978 0.88553 0.87898 0.78122 0.92223 0.90584 0.89731 0.91614 0.93515 0.92513 0.93754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.91 37.15 0.37 -0.30 16 2 C -0.14 -0.93 6.14 -26.74 -0.16 -1.09 16 3 C 0.12 0.80 6.54 -4.04 -0.03 0.78 16 4 N -0.37 -4.19 3.69 -61.06 -0.23 -4.41 16 5 C 0.09 1.08 11.27 -16.84 -0.19 0.89 16 6 C -0.09 -1.46 6.87 -83.55 -0.57 -2.04 16 7 C 0.61 12.04 7.89 -12.48 -0.10 11.94 16 8 O -0.56 -11.84 17.21 5.28 0.09 -11.75 16 9 N -0.59 -11.78 2.95 -157.98 -0.47 -12.25 16 10 C 0.10 1.87 4.95 -1.69 -0.01 1.87 16 11 C 0.14 2.71 5.52 -62.57 -0.35 2.37 16 12 H 0.11 1.89 8.14 -51.93 -0.42 1.47 16 13 C -0.15 -2.67 6.81 -22.29 -0.15 -2.82 16 14 C 0.10 1.98 5.24 -62.53 -0.33 1.65 16 15 H 0.12 2.19 8.05 -51.93 -0.42 1.77 16 16 C 0.17 4.32 4.77 -1.68 -0.01 4.31 16 17 N -0.60 -14.91 3.03 -156.37 -0.47 -15.38 16 18 C -0.23 -6.19 10.37 -15.06 -0.16 -6.34 16 19 H 0.08 2.13 7.83 -52.49 -0.41 1.71 16 20 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 21 N -0.92 -27.36 10.56 55.49 0.59 -26.77 16 22 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 N -0.19 -3.37 10.03 32.85 0.33 -3.04 16 27 N -0.07 -1.09 13.65 60.35 0.82 -0.26 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.10 0.40 8.08 -51.93 -0.42 -0.02 16 35 H 0.20 1.88 8.06 -52.49 -0.42 1.46 16 36 H 0.06 1.04 7.71 -51.93 -0.40 0.64 16 37 H 0.08 1.67 7.88 -51.93 -0.41 1.26 16 38 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.05 1.33 7.68 -51.93 -0.40 0.93 16 41 H 0.06 1.52 7.46 -51.93 -0.39 1.13 16 42 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 348.09 15.07 5.25 5.25 Total: -1.00 -34.25 348.09 -7.10 -41.35 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -6.21 Total: -0.83 kcal Atomic # 6 Polarization: 12.65 SS G_CDS: -1.78 Total: 10.87 kcal Atomic # 7 Polarization: -62.70 SS G_CDS: 0.57 Total: -62.12 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.09 Total: -11.75 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.25 -7.10 -41.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032705905.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.496 kcal (2) G-P(sol) polarization free energy of solvation -34.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds