Wall clock time and date at job start Tue Mar 31 2020 08:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50702 * 120.00164 * 2 1 4 4 C 1.52993 * 109.47193 * 125.00037 * 3 2 1 5 5 N 1.46507 * 109.47099 * 180.02562 * 4 3 2 6 6 C 1.34809 * 126.59565 * 124.70514 * 5 4 3 7 7 C 1.36593 * 106.83653 * 179.90729 * 6 5 4 8 8 C 1.47533 * 125.76962 * 180.17214 * 7 6 5 9 9 O 1.21590 * 119.99603 * 0.25663 * 8 7 6 10 10 N 1.34773 * 120.00147 * 180.25066 * 8 7 6 11 11 C 1.46500 * 119.99942 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.46957 * 180.02562 * 11 10 8 13 13 H 1.09005 * 112.73836 * 303.76068 * 12 11 10 14 14 C 1.53493 * 113.46570 * 172.94093 * 12 11 10 15 15 C 1.53502 * 83.34340 * 219.15126 * 14 12 11 16 16 N 1.47062 * 87.98435 * 26.07081 * 15 14 12 17 17 C 1.36938 * 136.05895 * 152.91982 * 16 15 14 18 18 H 1.08006 * 119.99875 * 179.97438 * 17 16 15 19 19 C 1.38811 * 120.00113 * 359.93966 * 17 16 15 20 20 N 1.31616 * 119.99881 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 119.99995 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47325 * 90.00308 * 21 19 17 23 23 H 1.48504 * 109.47204 * 210.00090 * 21 19 17 24 24 H 1.48501 * 109.47511 * 330.00369 * 21 19 17 25 25 N 1.34400 * 108.46413 * 0.36700 * 7 6 5 26 26 N 1.28764 * 109.51824 * 359.77229 * 25 7 6 27 27 H 1.07999 * 120.00108 * 179.72930 * 1 2 3 28 28 H 1.08000 * 119.99390 * 359.72719 * 1 2 3 29 29 H 1.08005 * 119.99846 * 180.27284 * 2 1 3 30 30 H 1.09003 * 109.46806 * 245.00403 * 3 2 1 31 31 H 1.08997 * 109.46799 * 4.99500 * 3 2 1 32 32 H 1.09007 * 109.47128 * 299.99304 * 4 3 2 33 33 H 1.08997 * 109.47686 * 60.00007 * 4 3 2 34 34 H 1.07999 * 126.58293 * 0.02562 * 6 5 4 35 35 H 0.96998 * 119.99580 * 0.02562 * 10 8 7 36 36 H 1.09001 * 109.47218 * 299.99958 * 11 10 8 37 37 H 1.09003 * 109.46841 * 60.00200 * 11 10 8 38 38 H 1.08998 * 114.20779 * 332.73850 * 14 12 11 39 39 H 1.09004 * 114.20770 * 105.56721 * 14 12 11 40 40 H 1.09000 * 113.47187 * 271.28504 * 15 14 12 41 41 H 1.09003 * 113.46358 * 140.84520 * 15 14 12 42 42 H 0.96999 * 120.00263 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 7 3.7672 2.6021 1.1819 6 6 3.8437 3.4855 2.1973 7 6 4.6265 4.5181 1.7652 8 6 4.9870 5.7141 2.5502 9 8 4.5809 5.8385 3.6895 10 7 5.7665 6.6686 2.0046 11 6 6.1249 7.8559 2.7843 12 6 7.0087 8.7743 1.9379 13 1 7.9019 8.2729 1.5650 14 6 7.2981 10.1270 2.6029 15 6 7.1278 10.6636 1.1748 16 7 6.2684 9.5031 0.8969 17 6 5.2345 9.2236 0.0436 18 1 4.7721 8.2476 0.0568 19 6 4.7802 10.1949 -0.8379 20 7 5.3435 11.3843 -0.8539 21 14 3.3694 9.8139 -2.0014 22 1 2.0814 10.1589 -1.3474 23 1 3.5230 10.6125 -3.2440 24 1 3.3819 8.3676 -2.3378 25 7 5.0094 4.2625 0.5025 26 7 4.5180 3.1341 0.1240 27 1 -0.5400 -0.9353 -0.0044 28 1 -0.5399 0.9354 0.0045 29 1 1.8500 -0.9354 -0.0045 30 1 2.6213 1.4026 -0.9314 31 1 1.3587 2.1316 0.0895 32 1 2.4773 1.2357 2.1130 33 1 3.7400 0.5066 1.0921 34 1 3.3772 3.3936 3.1670 35 1 6.0901 6.5694 1.0956 36 1 5.2186 8.3888 3.0722 37 1 6.6678 7.5524 3.6795 38 1 6.5270 10.4568 3.2991 39 1 8.3091 10.2233 2.9989 40 1 8.0532 10.6664 0.5989 41 1 6.5994 11.6159 1.1291 42 1 5.0258 12.0632 -1.4696 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038789232.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:03 Heat of formation + Delta-G solvation = 137.315995 kcal Electronic energy + Delta-G solvation = -24212.091635 eV Core-core repulsion = 20618.104931 eV Total energy + Delta-G solvation = -3593.986704 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.21511 -39.15743 -37.96158 -36.72325 -34.20545 -33.80513 -32.15287 -31.09132 -29.74354 -28.00088 -27.49765 -24.87924 -23.57469 -23.40809 -21.92145 -21.66848 -20.37919 -20.11501 -19.20721 -18.03784 -16.70768 -16.29879 -16.23864 -15.70413 -15.68257 -15.22481 -14.73796 -14.61678 -14.22288 -14.08906 -13.70203 -13.40893 -13.24485 -13.03982 -12.81746 -12.23056 -11.94999 -11.83431 -11.63244 -11.47973 -11.23152 -11.05258 -10.92924 -10.73224 -10.51210 -10.49927 -10.03296 -9.88388 -9.77783 -9.75362 -9.30596 -9.18391 -8.75563 -8.50168 -6.84255 -5.71078 -3.03235 1.08105 1.67168 1.83099 1.97061 3.43199 3.47886 3.49185 3.51163 3.58857 4.04870 4.19430 4.28428 4.47746 4.49662 4.69688 4.75254 4.77493 4.96371 5.09207 5.26054 5.30530 5.43280 5.45778 5.50834 5.60568 5.73934 5.86103 5.97490 6.09405 6.14074 6.19245 6.26175 6.36185 6.44872 6.64437 6.76321 6.91523 7.28653 7.44318 7.63802 7.80331 8.03814 8.06803 8.53557 9.09798 9.76499 10.68327 11.46289 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.014371 B = 0.003473 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.890953 B = 8061.180202 C = 9564.981297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.158 4.158 3 C -0.109 4.109 4 C 0.128 3.872 5 N -0.366 5.366 6 C 0.089 3.911 7 C -0.094 4.094 8 C 0.599 3.401 9 O -0.552 6.552 10 N -0.695 5.695 11 C 0.121 3.879 12 C 0.127 3.873 13 H 0.050 0.950 14 C -0.160 4.160 15 C 0.151 3.849 16 N -0.601 5.601 17 C -0.210 4.210 18 H 0.082 0.918 19 C -0.007 4.007 20 N -0.920 5.920 21 Si 0.907 3.093 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.280 1.280 25 N -0.198 5.198 26 N -0.066 5.066 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.115 0.885 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.203 0.797 35 H 0.412 0.588 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.080 0.920 39 H 0.058 0.942 40 H 0.025 0.975 41 H 0.072 0.928 42 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.076 -21.174 6.635 22.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.177 4.177 3 C -0.146 4.146 4 C 0.007 3.993 5 N -0.151 5.151 6 C -0.068 4.068 7 C -0.233 4.233 8 C 0.382 3.618 9 O -0.431 6.431 10 N -0.344 5.344 11 C -0.003 4.003 12 C 0.019 3.981 13 H 0.067 0.933 14 C -0.199 4.199 15 C 0.025 3.975 16 N -0.327 5.327 17 C -0.338 4.338 18 H 0.099 0.901 19 C -0.204 4.204 20 N -0.567 5.567 21 Si 0.737 3.263 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.206 1.206 25 N -0.071 5.071 26 N -0.046 5.046 27 H 0.120 0.880 28 H 0.117 0.883 29 H 0.133 0.867 30 H 0.111 0.889 31 H 0.095 0.905 32 H 0.123 0.877 33 H 0.117 0.883 34 H 0.220 0.780 35 H 0.248 0.752 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.077 0.923 40 H 0.043 0.957 41 H 0.090 0.910 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.130 -21.227 5.722 22.369 hybrid contribution -1.049 -0.287 -0.305 1.130 sum -5.179 -21.514 5.417 22.782 Atomic orbital electron populations 1.23973 0.95910 1.02316 0.99549 1.22740 0.96006 0.97623 1.01310 1.21046 0.98104 0.96767 0.98729 1.21985 0.94405 0.81463 1.01434 1.50551 1.36153 1.17337 1.11082 1.23342 0.98611 0.89432 0.95399 1.21621 1.07981 1.00278 0.93447 1.16754 0.78782 0.81091 0.85160 1.90764 1.55546 1.78932 1.17815 1.45795 1.49935 1.20036 1.18619 1.21885 0.99875 0.84655 0.93896 1.22430 0.93362 0.92544 0.89792 0.93322 1.23662 0.99912 0.97240 0.99129 1.22033 0.92765 0.94297 0.88355 1.45707 1.34469 1.10738 1.41782 1.18895 1.05575 0.97931 1.11367 0.90073 1.24746 0.99752 0.96137 0.99741 1.69826 1.43226 1.03730 1.39953 0.86194 0.82110 0.77522 0.80476 1.21665 1.21660 1.20583 1.74715 1.15220 1.07136 1.10056 1.81982 1.09276 1.05085 1.08277 0.88038 0.88330 0.86743 0.88941 0.90455 0.87664 0.88256 0.77984 0.75243 0.90819 0.91980 0.90170 0.92317 0.95737 0.90972 0.93763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.96 14.32 29.01 0.42 -0.54 16 2 C -0.16 -0.83 9.52 -36.03 -0.34 -1.18 16 3 C -0.11 -0.73 5.86 -27.89 -0.16 -0.89 16 4 C 0.13 0.79 6.52 -4.04 -0.03 0.76 16 5 N -0.37 -3.96 3.69 -61.06 -0.23 -4.19 16 6 C 0.09 1.05 11.27 -16.84 -0.19 0.86 16 7 C -0.09 -1.49 6.99 -83.55 -0.58 -2.07 16 8 C 0.60 10.80 7.82 -12.47 -0.10 10.71 16 9 O -0.55 -10.82 16.86 5.29 0.09 -10.73 16 10 N -0.70 -12.92 5.33 -61.35 -0.33 -13.24 16 11 C 0.12 2.26 5.52 -4.04 -0.02 2.23 16 12 C 0.13 2.51 4.10 -72.40 -0.30 2.21 16 13 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 14 C -0.16 -2.96 8.03 -26.22 -0.21 -3.17 16 15 C 0.15 3.53 7.39 -8.51 -0.06 3.46 16 16 N -0.60 -15.09 3.65 -176.99 -0.65 -15.73 16 17 C -0.21 -5.85 10.55 -15.06 -0.16 -6.01 16 18 H 0.08 2.21 7.50 -52.48 -0.39 1.82 16 19 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 20 N -0.92 -27.62 11.51 55.49 0.64 -26.98 16 21 Si 0.91 22.86 29.55 -169.99 -5.02 17.83 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 24 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 25 N -0.20 -3.34 12.04 32.85 0.40 -2.94 16 26 N -0.07 -0.97 13.65 60.35 0.82 -0.15 16 27 H 0.10 0.42 8.06 -52.49 -0.42 0.00 16 28 H 0.10 0.54 7.84 -52.49 -0.41 0.13 16 29 H 0.11 0.45 8.06 -52.48 -0.42 0.03 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.59 7.79 -51.93 -0.40 0.19 16 32 H 0.11 0.38 8.08 -51.93 -0.42 -0.04 16 33 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.20 1.69 8.06 -52.49 -0.42 1.27 16 35 H 0.41 7.86 8.06 -40.82 -0.33 7.53 16 36 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.08 1.46 8.12 -51.93 -0.42 1.04 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 1.87 7.12 -51.93 -0.37 1.50 16 42 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 365.00 15.07 5.50 5.50 Total: -1.00 -34.49 365.00 -6.72 -41.22 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -6.11 Total: 3.35 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: -1.84 Total: 6.07 kcal Atomic # 7 Polarization: -63.90 SS G_CDS: 0.66 Total: -63.24 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.09 Total: -10.73 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.49 -6.72 -41.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038789232.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.532 kcal (2) G-P(sol) polarization free energy of solvation -34.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds