Wall clock time and date at job start Tue Mar 31 2020 08:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33000 * 119.99790 * 2 1 4 4 C 1.50696 * 120.00217 * 359.97438 * 3 2 1 5 5 C 1.47102 * 119.99717 * 180.02562 * 3 2 1 6 6 O 1.21615 * 119.99488 * 259.80450 * 5 3 2 7 7 N 1.34773 * 120.00164 * 79.80996 * 5 3 2 8 8 C 1.47021 * 125.65043 * 354.96856 * 7 5 3 9 9 C 1.54328 * 107.27122 * 178.98941 * 8 7 5 10 10 H 1.08993 * 110.72550 * 96.16644 * 9 8 7 11 11 N 1.46498 * 110.86701 * 219.37331 * 9 8 7 12 12 C 1.36935 * 120.00105 * 268.60415 * 11 9 8 13 13 H 1.08011 * 119.99816 * 0.02562 * 12 11 9 14 14 C 1.38807 * 120.00409 * 180.02562 * 12 11 9 15 15 N 1.31625 * 120.00267 * 180.02562 * 14 12 11 16 16 Si 1.86795 * 119.99991 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.47149 * 90.00357 * 16 14 12 18 18 H 1.48499 * 109.47457 * 210.00400 * 16 14 12 19 19 H 1.48494 * 109.47176 * 330.00500 * 16 14 12 20 20 C 1.55159 * 102.94263 * 337.80135 * 9 8 7 21 21 H 1.08993 * 111.00502 * 153.57937 * 20 9 8 22 22 N 1.46504 * 111.00647 * 277.39830 * 20 9 8 23 23 C 1.35304 * 125.87059 * 81.53460 * 22 20 9 24 24 C 1.35353 * 106.17320 * 179.90755 * 23 22 20 25 25 N 1.33771 * 106.49843 * 0.34715 * 24 23 22 26 26 N 1.28638 * 108.88076 * 359.78010 * 25 24 23 27 27 C 1.47428 * 125.64817 * 175.01883 * 7 5 3 28 28 H 1.08993 * 109.47432 * 300.00251 * 1 2 3 29 29 H 1.09006 * 109.47217 * 60.00297 * 1 2 3 30 30 H 1.08999 * 109.46990 * 179.97438 * 1 2 3 31 31 H 1.08001 * 120.00461 * 179.97438 * 2 1 3 32 32 H 1.08998 * 109.47489 * 275.06647 * 4 3 2 33 33 H 1.09009 * 109.46656 * 35.06515 * 4 3 2 34 34 H 1.08994 * 109.47344 * 155.06019 * 4 3 2 35 35 H 1.08991 * 109.88321 * 59.56888 * 8 7 5 36 36 H 1.09001 * 109.88061 * 298.39995 * 8 7 5 37 37 H 0.96997 * 120.00463 * 88.61049 * 11 9 8 38 38 H 0.96995 * 120.00261 * 179.97438 * 15 14 12 39 39 H 1.08005 * 126.91615 * 0.02562 * 23 22 20 40 40 H 1.08005 * 126.75277 * 180.12638 * 24 23 22 41 41 H 1.08998 * 110.36576 * 85.24347 * 27 7 5 42 42 H 1.09002 * 110.36513 * 322.92641 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4185 2.4569 -0.0006 5 6 3.6430 1.1518 -0.0006 6 8 4.2513 1.3380 1.0359 7 7 4.3164 0.9456 -1.1496 8 6 3.7137 0.6062 -2.4470 9 6 4.8633 0.4922 -3.4704 10 1 5.1715 -0.5464 -3.5901 11 7 4.4727 1.0671 -4.7600 12 6 3.9035 0.2729 -5.7194 13 1 3.7421 -0.7772 -5.5251 14 6 3.5339 0.8174 -6.9416 15 7 2.9863 0.0542 -7.8635 16 14 3.8124 2.6337 -7.2773 17 1 5.1562 2.8255 -7.8794 18 1 2.7740 3.1285 -8.2165 19 1 3.7284 3.3913 -6.0029 20 6 5.9948 1.3287 -2.8166 21 1 6.9750 0.9869 -3.1487 22 7 5.8185 2.7567 -3.0923 23 6 4.9946 3.5972 -2.4249 24 6 5.1459 4.8117 -3.0031 25 7 6.0374 4.6550 -3.9881 26 7 6.4166 3.4261 -4.0147 27 6 5.7795 1.0219 -1.3136 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 2.0471 -0.9353 0.0004 32 1 1.1586 2.7260 -1.0243 33 1 0.5081 2.3510 0.5896 34 1 2.0435 3.2376 0.4328 35 1 3.0227 1.3921 -2.7516 36 1 3.1872 -0.3454 -2.3735 37 1 4.6174 2.0102 -4.9344 38 1 2.7277 0.4347 -8.7174 39 1 4.3479 3.3495 -1.5961 40 1 4.6428 5.7264 -2.7263 41 1 6.2409 0.0700 -1.0509 42 1 6.1886 1.8247 -0.7001 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070170862.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:50 Heat of formation + Delta-G solvation = 113.244480 kcal Electronic energy + Delta-G solvation = -26283.809551 eV Core-core repulsion = 22688.779028 eV Total energy + Delta-G solvation = -3595.030523 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.11924 -40.27947 -38.07422 -35.74353 -34.48388 -33.65550 -31.58809 -30.78904 -30.11468 -29.26415 -28.16373 -26.47484 -24.40387 -23.58297 -22.41123 -22.00051 -20.65619 -20.38165 -18.62166 -18.00563 -17.62661 -16.92266 -15.96052 -15.87349 -15.67563 -14.88884 -14.78346 -14.20381 -14.14619 -14.04199 -13.82946 -13.38911 -13.14773 -12.95197 -12.73849 -12.71085 -12.55291 -12.44944 -12.18460 -11.94564 -11.54373 -11.47813 -11.45762 -11.20072 -10.97868 -10.71584 -10.28859 -10.05632 -9.92819 -9.73711 -9.22236 -9.14542 -9.11132 -8.78161 -7.61175 -5.98650 -3.39885 1.62948 1.81625 2.43284 2.47071 2.82290 2.87629 3.31990 3.36371 3.45003 3.97946 4.35052 4.44137 4.54231 4.67180 4.71631 4.79220 5.04671 5.07286 5.15399 5.17070 5.26594 5.29242 5.36025 5.37189 5.38315 5.43767 5.53295 5.56954 5.62484 5.71521 5.78746 5.91042 5.99525 6.03962 6.19982 6.27862 6.33717 6.43071 6.79238 7.31400 7.69095 7.96920 8.17863 8.75345 8.91863 9.65592 9.78695 11.17372 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.012413 B = 0.006151 C = 0.004988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.085655 B = 4551.294801 C = 5611.744182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.112 4.112 3 C -0.165 4.165 4 C -0.106 4.106 5 C 0.574 3.426 6 O -0.541 6.541 7 N -0.615 5.615 8 C 0.070 3.930 9 C 0.174 3.826 10 H 0.103 0.897 11 N -0.729 5.729 12 C -0.266 4.266 13 H 0.096 0.904 14 C 0.022 3.978 15 N -0.920 5.920 16 Si 0.879 3.121 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.279 1.279 20 C 0.107 3.893 21 H 0.138 0.862 22 N -0.269 5.269 23 C -0.041 4.041 24 C -0.058 4.058 25 N -0.275 5.275 26 N -0.077 5.077 27 C 0.104 3.896 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.114 0.886 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.369 0.631 38 H 0.264 0.736 39 H 0.179 0.821 40 H 0.185 0.815 41 H 0.100 0.900 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.491 1.620 16.691 16.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.131 4.131 3 C -0.168 4.168 4 C -0.163 4.163 5 C 0.364 3.636 6 O -0.418 6.418 7 N -0.350 5.350 8 C -0.055 4.055 9 C 0.059 3.941 10 H 0.121 0.879 11 N -0.371 5.371 12 C -0.395 4.395 13 H 0.114 0.886 14 C -0.176 4.176 15 N -0.565 5.565 16 Si 0.709 3.291 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.205 1.205 20 C 0.003 3.997 21 H 0.156 0.844 22 N -0.063 5.063 23 C -0.192 4.192 24 C -0.215 4.215 25 N -0.141 5.141 26 N -0.056 5.056 27 C -0.020 4.020 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.131 0.869 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.205 0.795 38 H 0.074 0.926 39 H 0.196 0.804 40 H 0.202 0.798 41 H 0.118 0.882 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.293 1.473 15.927 15.998 hybrid contribution -0.772 1.140 0.526 1.474 sum -1.065 2.612 16.454 16.694 Atomic orbital electron populations 1.20890 0.91947 1.02887 1.02448 1.23225 0.96691 0.96653 0.96540 1.21271 0.92007 0.97361 1.06193 1.20694 0.99581 0.93281 1.02708 1.18257 0.87734 0.75723 0.81936 1.90814 1.70044 1.49936 1.31041 1.48673 1.06993 1.69405 1.09880 1.23397 0.99070 1.01714 0.81365 1.21554 0.89347 0.97160 0.86021 0.87925 1.42729 1.73887 1.09200 1.11305 1.18983 1.34084 0.93743 0.92683 0.88597 1.24633 0.99554 0.97369 0.96071 1.69689 1.45698 1.34809 1.06350 0.86648 0.78277 0.86125 0.78059 1.20282 1.21426 1.20530 1.23465 1.04347 0.75478 0.96427 0.84416 1.47219 1.27490 1.09969 1.21605 1.23515 1.01349 0.90828 1.03514 1.23523 1.02060 0.98799 0.97134 1.75097 1.12662 1.08153 1.18181 1.78369 1.18801 0.99277 1.09179 1.22492 0.82552 1.03741 0.93239 0.91089 0.90707 0.91591 0.86850 0.90582 0.90746 0.91694 0.90442 0.90533 0.79536 0.92637 0.80383 0.79756 0.88181 0.89291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.00 8.98 36.00 0.32 -0.68 16 2 C -0.11 -1.14 9.93 -36.13 -0.36 -1.50 16 3 C -0.17 -1.90 4.94 -102.85 -0.51 -2.41 16 4 C -0.11 -1.01 9.46 36.00 0.34 -0.67 16 5 C 0.57 7.75 6.97 -12.67 -0.09 7.66 16 6 O -0.54 -8.93 17.40 5.26 0.09 -8.84 16 7 N -0.61 -7.67 2.12 -171.91 -0.36 -8.04 16 8 C 0.07 0.98 5.72 -3.06 -0.02 0.96 16 9 C 0.17 2.74 3.48 -66.09 -0.23 2.51 16 10 H 0.10 1.52 8.09 -51.93 -0.42 1.10 16 11 N -0.73 -15.77 4.93 -51.65 -0.25 -16.03 16 12 C -0.27 -6.91 10.44 -15.06 -0.16 -7.07 16 13 H 0.10 2.59 8.06 -52.48 -0.42 2.17 16 14 C 0.02 0.61 5.50 -17.43 -0.10 0.52 16 15 N -0.92 -27.62 13.97 55.49 0.78 -26.84 16 16 Si 0.88 22.63 27.73 -169.99 -4.71 17.91 16 17 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 18 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 19 H -0.28 -7.11 6.52 56.52 0.37 -6.75 16 20 C 0.11 1.44 4.05 -65.78 -0.27 1.17 16 21 H 0.14 1.62 8.14 -51.93 -0.42 1.20 16 22 N -0.27 -4.33 2.34 -52.68 -0.12 -4.46 16 23 C -0.04 -0.61 10.01 -17.05 -0.17 -0.78 16 24 C -0.06 -0.90 12.05 -17.74 -0.21 -1.12 16 25 N -0.28 -5.25 12.41 30.24 0.38 -4.88 16 26 N -0.08 -1.48 12.46 60.35 0.75 -0.72 16 27 C 0.10 1.17 5.92 -2.53 -0.01 1.15 16 28 H 0.07 0.50 7.41 -51.93 -0.38 0.11 16 29 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.11 1.14 8.05 -52.49 -0.42 0.72 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.59 6.70 -51.92 -0.35 0.24 16 34 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 35 H 0.08 1.22 8.03 -51.93 -0.42 0.81 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.37 8.48 4.00 -40.82 -0.16 8.31 16 38 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.18 2.33 6.78 -52.48 -0.36 1.97 16 40 H 0.19 2.16 8.06 -52.48 -0.42 1.74 16 41 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.09 1.04 7.90 -51.93 -0.41 0.62 16 LS Contribution 349.82 15.07 5.27 5.27 Total: -1.00 -33.90 349.82 -5.54 -39.44 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -5.89 Total: 7.42 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -1.46 Total: -0.24 kcal Atomic # 7 Polarization: -62.12 SS G_CDS: 1.16 Total: -60.96 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.09 Total: -8.84 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.71 Total: 17.91 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.90 -5.54 -39.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070170862.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.686 kcal (2) G-P(sol) polarization free energy of solvation -33.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds