Wall clock time and date at job start Tue Mar 31 2020 08:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33000 * 119.99790 * 2 1 4 4 C 1.50696 * 120.00217 * 359.97438 * 3 2 1 5 5 C 1.47102 * 119.99717 * 180.02562 * 3 2 1 6 6 O 1.21615 * 119.99488 * 259.80450 * 5 3 2 7 7 N 1.34773 * 120.00164 * 79.80996 * 5 3 2 8 8 C 1.47021 * 125.65043 * 354.96856 * 7 5 3 9 9 C 1.54328 * 107.27122 * 178.98941 * 8 7 5 10 10 H 1.08993 * 110.72550 * 96.16644 * 9 8 7 11 11 N 1.46498 * 110.86701 * 219.37331 * 9 8 7 12 12 C 1.36935 * 120.00105 * 268.60415 * 11 9 8 13 13 H 1.08011 * 119.99816 * 0.02562 * 12 11 9 14 14 C 1.38807 * 120.00409 * 180.02562 * 12 11 9 15 15 N 1.31625 * 120.00267 * 180.02562 * 14 12 11 16 16 Si 1.86795 * 119.99991 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.47149 * 90.00357 * 16 14 12 18 18 H 1.48499 * 109.47457 * 210.00400 * 16 14 12 19 19 H 1.48494 * 109.47176 * 330.00500 * 16 14 12 20 20 C 1.55159 * 102.94263 * 337.80135 * 9 8 7 21 21 H 1.08993 * 111.00502 * 153.57937 * 20 9 8 22 22 N 1.46504 * 111.00647 * 277.39830 * 20 9 8 23 23 C 1.35304 * 125.87059 * 81.53460 * 22 20 9 24 24 C 1.35353 * 106.17320 * 179.90755 * 23 22 20 25 25 N 1.33771 * 106.49843 * 0.34715 * 24 23 22 26 26 N 1.28638 * 108.88076 * 359.78010 * 25 24 23 27 27 C 1.47428 * 125.64817 * 175.01883 * 7 5 3 28 28 H 1.08993 * 109.47432 * 300.00251 * 1 2 3 29 29 H 1.09006 * 109.47217 * 60.00297 * 1 2 3 30 30 H 1.08999 * 109.46990 * 179.97438 * 1 2 3 31 31 H 1.08001 * 120.00461 * 179.97438 * 2 1 3 32 32 H 1.08998 * 109.47489 * 275.06647 * 4 3 2 33 33 H 1.09009 * 109.46656 * 35.06515 * 4 3 2 34 34 H 1.08994 * 109.47344 * 155.06019 * 4 3 2 35 35 H 1.08991 * 109.88321 * 59.56888 * 8 7 5 36 36 H 1.09001 * 109.88061 * 298.39995 * 8 7 5 37 37 H 0.96997 * 120.00463 * 88.61049 * 11 9 8 38 38 H 0.96995 * 120.00261 * 179.97438 * 15 14 12 39 39 H 1.08005 * 126.91615 * 0.02562 * 23 22 20 40 40 H 1.08005 * 126.75277 * 180.12638 * 24 23 22 41 41 H 1.08998 * 110.36576 * 85.24347 * 27 7 5 42 42 H 1.09002 * 110.36513 * 322.92641 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4185 2.4569 -0.0006 5 6 3.6430 1.1518 -0.0006 6 8 4.2513 1.3380 1.0359 7 7 4.3164 0.9456 -1.1496 8 6 3.7137 0.6062 -2.4470 9 6 4.8633 0.4922 -3.4704 10 1 5.1715 -0.5464 -3.5901 11 7 4.4727 1.0671 -4.7600 12 6 3.9035 0.2729 -5.7194 13 1 3.7421 -0.7772 -5.5251 14 6 3.5339 0.8174 -6.9416 15 7 2.9863 0.0542 -7.8635 16 14 3.8124 2.6337 -7.2773 17 1 5.1562 2.8255 -7.8794 18 1 2.7740 3.1285 -8.2165 19 1 3.7284 3.3913 -6.0029 20 6 5.9948 1.3287 -2.8166 21 1 6.9750 0.9869 -3.1487 22 7 5.8185 2.7567 -3.0923 23 6 4.9946 3.5972 -2.4249 24 6 5.1459 4.8117 -3.0031 25 7 6.0374 4.6550 -3.9881 26 7 6.4166 3.4261 -4.0147 27 6 5.7795 1.0219 -1.3136 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 2.0471 -0.9353 0.0004 32 1 1.1586 2.7260 -1.0243 33 1 0.5081 2.3510 0.5896 34 1 2.0435 3.2376 0.4328 35 1 3.0227 1.3921 -2.7516 36 1 3.1872 -0.3454 -2.3735 37 1 4.6174 2.0102 -4.9344 38 1 2.7277 0.4347 -8.7174 39 1 4.3479 3.3495 -1.5961 40 1 4.6428 5.7264 -2.7263 41 1 6.2409 0.0700 -1.0509 42 1 6.1886 1.8247 -0.7001 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070170862.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:49 Heat of formation + Delta-G solvation = 90.760134 kcal Electronic energy + Delta-G solvation = -26284.784545 eV Core-core repulsion = 22688.779028 eV Total energy + Delta-G solvation = -3596.005517 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.37748 -41.37109 -39.25849 -36.59319 -36.15120 -34.91235 -33.45716 -32.03236 -31.26443 -30.09412 -29.49132 -27.32652 -25.75004 -25.03946 -23.68504 -23.29119 -21.77173 -21.59324 -20.11256 -19.38022 -18.79060 -17.94348 -17.26533 -17.02878 -16.77458 -16.55983 -16.02961 -15.74181 -15.24732 -15.13299 -14.83197 -14.66794 -14.37431 -14.17154 -14.09587 -13.73711 -13.44936 -13.37175 -13.21094 -13.12352 -12.96585 -12.90468 -12.75099 -12.55093 -12.24022 -12.20956 -11.98997 -11.91406 -11.35034 -11.05609 -11.01682 -10.40458 -9.94593 -9.85101 -9.51946 -8.13508 -5.47876 0.56713 0.80137 1.24891 1.29991 1.31876 1.35503 1.41258 1.56132 1.85252 2.34792 2.88635 3.10368 3.32242 3.38646 3.57519 3.60503 3.84057 3.96539 4.01592 4.12552 4.19193 4.24947 4.34786 4.42754 4.48347 4.52332 4.70530 4.73212 4.79055 4.82119 4.89052 4.92052 5.03341 5.06064 5.14179 5.17586 5.51996 5.58292 5.66011 5.67486 6.10338 6.24853 6.91258 6.94320 7.46199 7.66958 7.80835 9.06405 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.012413 B = 0.006151 C = 0.004988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.085655 B = 4551.294801 C = 5611.744182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.104 4.104 3 C -0.189 4.189 4 C -0.103 4.103 5 C 0.578 3.422 6 O -0.572 6.572 7 N -0.609 5.609 8 C 0.088 3.912 9 C 0.163 3.837 10 H 0.119 0.881 11 N -0.740 5.740 12 C -0.228 4.228 13 H 0.085 0.915 14 C -0.038 4.038 15 N -0.966 5.966 16 Si 0.930 3.070 17 H -0.290 1.290 18 H -0.292 1.292 19 H -0.277 1.277 20 C 0.108 3.892 21 H 0.156 0.844 22 N -0.268 5.268 23 C -0.034 4.034 24 C -0.061 4.061 25 N -0.309 5.309 26 N -0.114 5.114 27 C 0.110 3.890 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.113 0.887 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.364 0.636 38 H 0.259 0.741 39 H 0.197 0.803 40 H 0.218 0.782 41 H 0.131 0.869 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.841 1.535 18.969 19.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.123 4.123 3 C -0.192 4.192 4 C -0.159 4.159 5 C 0.368 3.632 6 O -0.452 6.452 7 N -0.343 5.343 8 C -0.037 4.037 9 C 0.052 3.948 10 H 0.136 0.864 11 N -0.382 5.382 12 C -0.358 4.358 13 H 0.103 0.897 14 C -0.231 4.231 15 N -0.616 5.616 16 Si 0.761 3.239 17 H -0.217 1.217 18 H -0.219 1.219 19 H -0.203 1.203 20 C 0.005 3.995 21 H 0.174 0.826 22 N -0.062 5.062 23 C -0.186 4.186 24 C -0.219 4.219 25 N -0.174 5.174 26 N -0.093 5.093 27 C -0.013 4.013 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.131 0.869 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.104 0.896 37 H 0.198 0.802 38 H 0.068 0.932 39 H 0.214 0.786 40 H 0.234 0.766 41 H 0.149 0.851 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.610 1.388 18.256 18.319 hybrid contribution -0.644 1.088 -0.013 1.264 sum -1.255 2.475 18.243 18.453 Atomic orbital electron populations 1.20941 0.90301 1.03803 1.03057 1.23469 0.97956 0.96215 0.94662 1.21372 0.90996 0.98623 1.08197 1.20705 0.99969 0.92236 1.03020 1.18552 0.88506 0.74751 0.81367 1.90801 1.70902 1.51491 1.32000 1.48603 1.07475 1.69051 1.09140 1.22952 0.97714 1.01690 0.81392 1.21868 0.90644 0.98182 0.84122 0.86358 1.42743 1.74072 1.08608 1.12772 1.19062 1.30634 0.93470 0.92647 0.89726 1.25122 1.01449 0.99691 0.96834 1.69785 1.48858 1.35961 1.06947 0.85833 0.77066 0.83499 0.77546 1.21691 1.21867 1.20323 1.23637 1.04216 0.74050 0.97557 0.82602 1.47439 1.27072 1.10707 1.20956 1.23841 1.00809 0.90530 1.03431 1.24164 1.01248 1.00405 0.96072 1.75048 1.14107 1.08520 1.19754 1.78314 1.20410 0.99804 1.10735 1.22630 0.81933 1.05409 0.91362 0.89770 0.90602 0.90626 0.86883 0.90547 0.89051 0.92145 0.91958 0.89614 0.80211 0.93158 0.78633 0.76557 0.85092 0.89099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.64 8.98 71.23 0.64 -1.00 16 2 C -0.10 -1.86 9.93 24.52 0.24 -1.61 16 3 C -0.19 -3.90 4.94 -18.70 -0.09 -3.99 16 4 C -0.10 -1.73 9.46 71.23 0.67 -1.06 16 5 C 0.58 14.25 6.97 86.57 0.60 14.85 16 6 O -0.57 -17.74 17.40 -4.08 -0.07 -17.81 16 7 N -0.61 -13.52 2.12 -816.05 -1.73 -15.24 16 8 C 0.09 2.24 5.72 86.73 0.50 2.74 16 9 C 0.16 4.77 3.48 46.18 0.16 4.93 16 10 H 0.12 3.15 8.09 -2.39 -0.02 3.13 16 11 N -0.74 -30.95 4.93 -317.33 -1.56 -32.51 16 12 C -0.23 -11.67 10.44 84.03 0.88 -10.79 16 13 H 0.08 4.51 8.06 -2.90 -0.02 4.49 16 14 C -0.04 -2.12 5.50 84.86 0.47 -1.66 16 15 N -0.97 -58.89 13.97 21.65 0.30 -58.59 16 16 Si 0.93 47.49 27.73 68.60 1.90 49.40 16 17 H -0.29 -15.24 7.11 99.48 0.71 -14.53 16 18 H -0.29 -14.91 7.11 99.48 0.71 -14.20 16 19 H -0.28 -13.82 6.52 99.48 0.65 -13.17 16 20 C 0.11 2.63 4.05 46.38 0.19 2.82 16 21 H 0.16 3.23 8.14 -2.39 -0.02 3.22 16 22 N -0.27 -8.13 2.34 -320.58 -0.75 -8.88 16 23 C -0.03 -0.95 10.01 83.49 0.84 -0.11 16 24 C -0.06 -1.79 12.05 83.73 1.01 -0.78 16 25 N -0.31 -11.53 12.41 -58.25 -0.72 -12.25 16 26 N -0.11 -4.26 12.46 37.02 0.46 -3.80 16 27 C 0.11 2.13 5.92 86.85 0.51 2.64 16 28 H 0.08 0.92 7.41 -2.39 -0.02 0.90 16 29 H 0.08 1.02 8.10 -2.38 -0.02 1.00 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.11 1.99 8.05 -2.91 -0.02 1.97 16 32 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.09 1.20 6.70 -2.38 -0.02 1.18 16 34 H 0.06 1.06 8.08 -2.39 -0.02 1.04 16 35 H 0.06 1.83 8.03 -2.39 -0.02 1.81 16 36 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.36 16.25 4.00 -92.71 -0.37 15.87 16 38 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 39 H 0.20 4.60 6.78 -2.91 -0.02 4.58 16 40 H 0.22 4.52 8.06 -2.91 -0.02 4.50 16 41 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.09 1.83 7.90 -2.39 -0.02 1.82 16 Total: -1.00 -73.70 349.82 5.05 -68.65 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: 0.60 Total: 24.07 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: 6.62 Total: 6.97 kcal Atomic # 7 Polarization: -127.28 SS G_CDS: -4.00 Total: -131.28 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.07 Total: -17.81 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 1.90 Total: 49.40 kcal Total: -73.70 5.05 -68.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070170862.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.414 kcal (2) G-P(sol) polarization free energy of solvation -73.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds