Wall clock time and date at job start Tue Mar 31 2020 08:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32995 * 120.00555 * 2 1 4 4 C 1.50693 * 120.00099 * 179.97438 * 3 2 1 5 5 C 1.47101 * 119.99433 * 359.97438 * 3 2 1 6 6 O 1.21616 * 120.00448 * 353.51241 * 5 3 2 7 7 N 1.34775 * 119.99703 * 173.51737 * 5 3 2 8 8 C 1.47431 * 125.64815 * 356.66003 * 7 5 3 9 9 C 1.54907 * 104.83366 * 204.15140 * 8 7 5 10 10 H 1.09007 * 111.03962 * 81.07692 * 9 8 7 11 11 N 1.46502 * 111.00765 * 204.91678 * 9 8 7 12 12 C 1.36928 * 120.00158 * 267.19783 * 11 9 8 13 13 H 1.08004 * 119.99736 * 0.02562 * 12 11 9 14 14 C 1.38805 * 120.00208 * 179.97438 * 12 11 9 15 15 N 1.31622 * 120.00125 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00346 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.46981 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47544 * 240.00268 * 16 14 12 19 19 H 1.48496 * 109.47375 * 119.99971 * 16 14 12 20 20 C 1.55166 * 101.58163 * 322.99358 * 9 8 7 21 21 H 1.09002 * 110.71627 * 153.86327 * 20 9 8 22 22 N 1.46499 * 110.71874 * 276.95883 * 20 9 8 23 23 C 1.35312 * 125.86482 * 84.71198 * 22 20 9 24 24 C 1.35349 * 106.17339 * 179.90525 * 23 22 20 25 25 N 1.33778 * 106.49753 * 0.35342 * 24 23 22 26 26 N 1.28632 * 108.88303 * 359.77803 * 25 24 23 27 27 C 1.47026 * 125.65090 * 176.69165 * 7 5 3 28 28 H 1.09001 * 109.47015 * 300.00749 * 1 2 3 29 29 H 1.09001 * 109.46929 * 59.99796 * 1 2 3 30 30 H 1.08995 * 109.47568 * 180.02562 * 1 2 3 31 31 H 1.07998 * 119.99447 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47487 * 266.42241 * 4 3 2 33 33 H 1.09000 * 109.46898 * 26.42315 * 4 3 2 34 34 H 1.09001 * 109.46851 * 146.42622 * 4 3 2 35 35 H 1.08995 * 110.36491 * 85.31581 * 8 7 5 36 36 H 1.09001 * 110.36519 * 322.99279 * 8 7 5 37 37 H 0.96999 * 119.99304 * 87.19309 * 11 9 8 38 38 H 0.96999 * 119.99436 * 359.97438 * 15 14 12 39 39 H 1.07999 * 126.91366 * 0.02562 * 23 22 20 40 40 H 1.08000 * 126.75756 * 180.12925 * 24 23 22 41 41 H 1.08999 * 109.87905 * 59.49681 * 27 7 5 42 42 H 1.09001 * 109.87698 * 298.33697 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1721 1.1517 0.0000 4 6 3.6790 1.1516 0.0006 5 6 1.4366 2.4256 -0.0006 6 8 0.2263 2.4291 -0.1200 7 7 2.1040 3.5891 0.1312 8 6 3.5550 3.7270 0.3526 9 6 3.7227 5.1074 1.0351 10 1 3.5126 5.0442 2.1029 11 7 5.0621 5.6515 0.7977 12 6 6.0652 5.4196 1.7004 13 1 5.8691 4.8352 2.5872 14 6 7.3343 5.9346 1.4752 15 7 7.5735 6.6464 0.3941 16 14 8.7030 5.6176 2.7063 17 1 8.1800 4.7960 3.8273 18 1 9.2049 6.9122 3.2330 19 1 9.8125 4.8920 2.0371 20 6 2.6430 5.9492 0.3048 21 1 2.3044 6.7720 0.9345 22 7 3.1545 6.4527 -0.9723 23 6 3.1566 5.7797 -2.1462 24 6 3.7138 6.6117 -3.0568 25 7 4.0284 7.7352 -2.4023 26 7 3.6843 7.6091 -1.1693 27 6 1.5056 4.9310 0.0786 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 2.0469 -0.9353 0.0004 32 1 4.0420 1.2159 1.0264 33 1 4.0424 0.2311 -0.4564 34 1 4.0426 2.0077 -0.5678 35 1 4.0874 3.7068 -0.5982 36 1 3.9159 2.9337 1.0073 37 1 5.2382 6.1760 0.0009 38 1 6.8628 6.8106 -0.2453 39 1 2.7862 4.7805 -2.3217 40 1 3.8762 6.4074 -4.1048 41 1 0.7552 5.0332 0.8626 42 1 1.0495 5.0954 -0.8976 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070170863.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:52 Heat of formation + Delta-G solvation = 127.626243 kcal Electronic energy + Delta-G solvation = -26155.906253 eV Core-core repulsion = 22561.499370 eV Total energy + Delta-G solvation = -3594.406883 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.03010 -40.39661 -38.13853 -35.20362 -34.67281 -33.78703 -31.35520 -30.88321 -30.55597 -28.95813 -27.73305 -25.55042 -24.15706 -23.62560 -22.38386 -22.21329 -21.18769 -20.22601 -18.75047 -17.94342 -17.30343 -16.70804 -15.89795 -15.79471 -15.02354 -14.89022 -14.65191 -14.27855 -14.15649 -13.79848 -13.69084 -13.66415 -13.48037 -13.20731 -12.93905 -12.64007 -12.36834 -12.21843 -12.12127 -11.72688 -11.35710 -11.30826 -11.03017 -10.80049 -10.73835 -10.56362 -10.15572 -9.83515 -9.69000 -9.37124 -9.28852 -9.12797 -9.05575 -8.57633 -7.33047 -6.26981 -3.33890 1.28207 1.90784 2.51351 2.88975 2.93640 3.15684 3.42731 3.49285 3.58157 4.02309 4.43741 4.50458 4.62649 4.75279 4.75545 4.83766 5.08725 5.10361 5.16852 5.25629 5.34903 5.41474 5.47593 5.51816 5.53552 5.56112 5.60208 5.70173 5.73597 5.79121 5.91288 6.00228 6.04776 6.17005 6.25382 6.35200 6.42468 6.44488 6.87471 7.42524 7.59297 8.08913 8.56814 8.86699 8.95259 9.83209 9.92194 11.19211 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.012344 B = 0.005486 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.765071 B = 5102.995421 C = 6699.461277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.076 4.076 3 C -0.184 4.184 4 C -0.131 4.131 5 C 0.568 3.432 6 O -0.543 6.543 7 N -0.613 5.613 8 C 0.058 3.942 9 C 0.170 3.830 10 H 0.094 0.906 11 N -0.715 5.715 12 C -0.356 4.356 13 H 0.071 0.929 14 C -0.032 4.032 15 N -0.927 5.927 16 Si 1.087 2.913 17 H -0.293 1.293 18 H -0.290 1.290 19 H -0.291 1.291 20 C 0.109 3.891 21 H 0.131 0.869 22 N -0.270 5.270 23 C -0.051 4.051 24 C -0.055 4.055 25 N -0.272 5.272 26 N -0.069 5.069 27 C 0.108 3.892 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.050 0.950 31 H 0.124 0.876 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.375 0.625 38 H 0.260 0.740 39 H 0.179 0.821 40 H 0.185 0.815 41 H 0.094 0.906 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.543 -11.295 -1.764 16.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.096 4.096 3 C -0.187 4.187 4 C -0.187 4.187 5 C 0.360 3.640 6 O -0.423 6.423 7 N -0.347 5.347 8 C -0.068 4.068 9 C 0.055 3.945 10 H 0.111 0.889 11 N -0.356 5.356 12 C -0.486 4.486 13 H 0.089 0.911 14 C -0.232 4.232 15 N -0.569 5.569 16 Si 0.917 3.083 17 H -0.219 1.219 18 H -0.217 1.217 19 H -0.218 1.218 20 C 0.005 3.995 21 H 0.149 0.851 22 N -0.063 5.063 23 C -0.202 4.202 24 C -0.212 4.212 25 N -0.137 5.137 26 N -0.048 5.048 27 C -0.016 4.016 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.069 0.931 31 H 0.142 0.858 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.114 0.886 37 H 0.211 0.789 38 H 0.072 0.928 39 H 0.196 0.804 40 H 0.202 0.798 41 H 0.112 0.888 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.173 -9.795 -0.641 14.873 hybrid contribution -1.759 -1.360 -1.045 2.457 sum -12.932 -11.155 -1.686 17.162 Atomic orbital electron populations 1.21005 0.91861 1.00809 1.04024 1.23585 0.97078 0.96600 0.92352 1.21387 0.96635 0.92578 1.08107 1.21381 0.90722 1.03711 1.02856 1.18158 0.86469 0.82972 0.76423 1.90770 1.13704 1.87035 1.50807 1.48385 1.09850 1.04700 1.71775 1.24170 0.78762 1.02392 1.01463 1.21691 0.85849 0.89275 0.97707 0.88864 1.42348 1.04621 1.61846 1.26830 1.20040 0.91433 1.33816 1.03331 0.91140 1.25884 0.98322 0.97445 1.01506 1.70794 1.35493 1.39541 1.11118 0.83150 0.75148 0.75980 0.74034 1.21936 1.21724 1.21813 1.23254 0.96271 0.98321 0.81672 0.85075 1.47286 1.38945 1.11172 1.08944 1.23441 1.09052 1.01667 0.86052 1.23509 1.04453 0.91755 1.01503 1.75137 1.17978 1.22555 0.98077 1.78419 1.12248 1.01608 1.12552 1.22115 0.94493 0.81415 1.03617 0.90598 0.89938 0.93117 0.85832 0.90617 0.91727 0.89874 0.90937 0.88555 0.78861 0.92845 0.80415 0.79803 0.88769 0.90323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 8.45 36.01 0.30 -0.94 16 2 C -0.08 -0.77 9.94 -36.13 -0.36 -1.13 16 3 C -0.18 -2.16 5.98 -102.85 -0.61 -2.78 16 4 C -0.13 -1.42 8.08 36.00 0.29 -1.13 16 5 C 0.57 7.81 7.74 -12.67 -0.10 7.71 16 6 O -0.54 -8.48 13.45 5.26 0.07 -8.41 16 7 N -0.61 -8.06 3.33 -171.91 -0.57 -8.63 16 8 C 0.06 0.84 4.27 -2.53 -0.01 0.83 16 9 C 0.17 2.90 3.58 -65.78 -0.24 2.67 16 10 H 0.09 1.56 8.09 -51.93 -0.42 1.14 16 11 N -0.71 -16.42 5.20 -51.35 -0.27 -16.69 16 12 C -0.36 -9.25 9.96 -15.07 -0.15 -9.40 16 13 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 14 C -0.03 -0.88 5.50 -17.43 -0.10 -0.97 16 15 N -0.93 -28.29 13.70 55.49 0.76 -27.53 16 16 Si 1.09 24.87 29.92 -169.99 -5.09 19.79 16 17 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 20 C 0.11 1.59 3.96 -66.09 -0.26 1.33 16 21 H 0.13 1.77 8.14 -51.93 -0.42 1.35 16 22 N -0.27 -4.50 2.38 -52.98 -0.13 -4.63 16 23 C -0.05 -0.77 9.36 -17.05 -0.16 -0.93 16 24 C -0.05 -0.87 12.05 -17.73 -0.21 -1.09 16 25 N -0.27 -5.38 12.41 30.24 0.38 -5.00 16 26 N -0.07 -1.38 12.28 60.35 0.74 -0.64 16 27 C 0.11 1.33 5.92 -3.06 -0.02 1.31 16 28 H 0.08 0.88 7.41 -51.93 -0.38 0.50 16 29 H 0.08 0.97 7.05 -51.93 -0.37 0.60 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.12 0.95 8.03 -52.49 -0.42 0.53 16 32 H 0.08 0.82 7.04 -51.93 -0.37 0.46 16 33 H 0.06 0.59 8.03 -51.93 -0.42 0.18 16 34 H 0.08 1.00 4.87 -51.93 -0.25 0.75 16 35 H 0.07 1.15 6.51 -51.93 -0.34 0.81 16 36 H 0.10 1.38 5.13 -51.93 -0.27 1.11 16 37 H 0.38 9.36 4.83 -40.82 -0.20 9.17 16 38 H 0.26 8.08 6.77 -40.82 -0.28 7.80 16 39 H 0.18 2.23 7.72 -52.49 -0.41 1.82 16 40 H 0.18 2.22 8.06 -52.49 -0.42 1.80 16 41 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.08 0.96 7.19 -51.93 -0.37 0.59 16 LS Contribution 337.75 15.07 5.09 5.09 Total: -1.00 -32.90 337.75 -6.02 -38.92 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -5.38 Total: 12.24 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -1.62 Total: -4.51 kcal Atomic # 7 Polarization: -64.03 SS G_CDS: 0.91 Total: -63.12 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.07 Total: -8.41 kcal Atomic # 14 Polarization: 24.87 SS G_CDS: -5.09 Total: 19.79 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.90 -6.02 -38.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070170863.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.544 kcal (2) G-P(sol) polarization free energy of solvation -32.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds