Wall clock time and date at job start Tue Mar 31 2020 08:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32995 * 120.00555 * 2 1 4 4 C 1.50693 * 120.00099 * 179.97438 * 3 2 1 5 5 C 1.47101 * 119.99433 * 359.97438 * 3 2 1 6 6 O 1.21616 * 120.00448 * 353.51241 * 5 3 2 7 7 N 1.34775 * 119.99703 * 173.51737 * 5 3 2 8 8 C 1.47431 * 125.64815 * 356.66003 * 7 5 3 9 9 C 1.54907 * 104.83366 * 204.15140 * 8 7 5 10 10 H 1.09007 * 111.03962 * 81.07692 * 9 8 7 11 11 N 1.46502 * 111.00765 * 204.91678 * 9 8 7 12 12 C 1.36928 * 120.00158 * 267.19783 * 11 9 8 13 13 H 1.08004 * 119.99736 * 0.02562 * 12 11 9 14 14 C 1.38805 * 120.00208 * 179.97438 * 12 11 9 15 15 N 1.31622 * 120.00125 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00346 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.46981 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47544 * 240.00268 * 16 14 12 19 19 H 1.48496 * 109.47375 * 119.99971 * 16 14 12 20 20 C 1.55166 * 101.58163 * 322.99358 * 9 8 7 21 21 H 1.09002 * 110.71627 * 153.86327 * 20 9 8 22 22 N 1.46499 * 110.71874 * 276.95883 * 20 9 8 23 23 C 1.35312 * 125.86482 * 84.71198 * 22 20 9 24 24 C 1.35349 * 106.17339 * 179.90525 * 23 22 20 25 25 N 1.33778 * 106.49753 * 0.35342 * 24 23 22 26 26 N 1.28632 * 108.88303 * 359.77803 * 25 24 23 27 27 C 1.47026 * 125.65090 * 176.69165 * 7 5 3 28 28 H 1.09001 * 109.47015 * 300.00749 * 1 2 3 29 29 H 1.09001 * 109.46929 * 59.99796 * 1 2 3 30 30 H 1.08995 * 109.47568 * 180.02562 * 1 2 3 31 31 H 1.07998 * 119.99447 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47487 * 266.42241 * 4 3 2 33 33 H 1.09000 * 109.46898 * 26.42315 * 4 3 2 34 34 H 1.09001 * 109.46851 * 146.42622 * 4 3 2 35 35 H 1.08995 * 110.36491 * 85.31581 * 8 7 5 36 36 H 1.09001 * 110.36519 * 322.99279 * 8 7 5 37 37 H 0.96999 * 119.99304 * 87.19309 * 11 9 8 38 38 H 0.96999 * 119.99436 * 359.97438 * 15 14 12 39 39 H 1.07999 * 126.91366 * 0.02562 * 23 22 20 40 40 H 1.08000 * 126.75756 * 180.12925 * 24 23 22 41 41 H 1.08999 * 109.87905 * 59.49681 * 27 7 5 42 42 H 1.09001 * 109.87698 * 298.33697 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1721 1.1517 0.0000 4 6 3.6790 1.1516 0.0006 5 6 1.4366 2.4256 -0.0006 6 8 0.2263 2.4291 -0.1200 7 7 2.1040 3.5891 0.1312 8 6 3.5550 3.7270 0.3526 9 6 3.7227 5.1074 1.0351 10 1 3.5126 5.0442 2.1029 11 7 5.0621 5.6515 0.7977 12 6 6.0652 5.4196 1.7004 13 1 5.8691 4.8352 2.5872 14 6 7.3343 5.9346 1.4752 15 7 7.5735 6.6464 0.3941 16 14 8.7030 5.6176 2.7063 17 1 8.1800 4.7960 3.8273 18 1 9.2049 6.9122 3.2330 19 1 9.8125 4.8920 2.0371 20 6 2.6430 5.9492 0.3048 21 1 2.3044 6.7720 0.9345 22 7 3.1545 6.4527 -0.9723 23 6 3.1566 5.7797 -2.1462 24 6 3.7138 6.6117 -3.0568 25 7 4.0284 7.7352 -2.4023 26 7 3.6843 7.6091 -1.1693 27 6 1.5056 4.9310 0.0786 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 2.0469 -0.9353 0.0004 32 1 4.0420 1.2159 1.0264 33 1 4.0424 0.2311 -0.4564 34 1 4.0426 2.0077 -0.5678 35 1 4.0874 3.7068 -0.5982 36 1 3.9159 2.9337 1.0073 37 1 5.2382 6.1760 0.0009 38 1 6.8628 6.8106 -0.2453 39 1 2.7862 4.7805 -2.3217 40 1 3.8762 6.4074 -4.1048 41 1 0.7552 5.0332 0.8626 42 1 1.0495 5.0954 -0.8976 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070170863.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:52 Heat of formation + Delta-G solvation = 105.104246 kcal Electronic energy + Delta-G solvation = -26156.882880 eV Core-core repulsion = 22561.499370 eV Total energy + Delta-G solvation = -3595.383510 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.35219 -41.50873 -39.35408 -36.39365 -36.11416 -35.08615 -33.04618 -32.09833 -31.68395 -30.15614 -29.08851 -26.70928 -25.45391 -25.17597 -23.72538 -23.41089 -22.36684 -21.49545 -19.81903 -19.66367 -18.66479 -18.01923 -17.19853 -16.92134 -16.32788 -16.07887 -15.89887 -15.78138 -15.42512 -15.24891 -14.89930 -14.72170 -14.52666 -14.48328 -14.06730 -13.63918 -13.48423 -13.42028 -13.08020 -12.81365 -12.72168 -12.66489 -12.53989 -12.43841 -12.01144 -11.90358 -11.84503 -11.41253 -11.25593 -10.91687 -10.67918 -10.36895 -10.22522 -9.63227 -9.24500 -8.41502 -5.41401 0.39227 0.60673 1.28904 1.59188 1.60896 1.70086 1.79804 1.81070 2.15207 2.66725 2.88338 3.19115 3.45263 3.49033 3.61225 3.63481 3.86774 3.92497 3.94769 4.08485 4.10009 4.24596 4.36313 4.38533 4.45011 4.51278 4.63984 4.74031 4.77300 4.84603 4.85086 4.88486 4.92946 5.12164 5.21241 5.26146 5.52086 5.55263 5.60889 5.61918 6.33818 6.41986 6.96301 7.03609 7.51163 7.86890 7.97234 9.07399 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.012344 B = 0.005486 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.765071 B = 5102.995421 C = 6699.461277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.056 4.056 3 C -0.207 4.207 4 C -0.125 4.125 5 C 0.565 3.435 6 O -0.564 6.564 7 N -0.609 5.609 8 C 0.080 3.920 9 C 0.159 3.841 10 H 0.100 0.900 11 N -0.733 5.733 12 C -0.336 4.336 13 H 0.082 0.918 14 C -0.098 4.098 15 N -0.970 5.970 16 Si 1.132 2.868 17 H -0.262 1.262 18 H -0.298 1.298 19 H -0.293 1.293 20 C 0.112 3.888 21 H 0.140 0.860 22 N -0.267 5.267 23 C -0.041 4.041 24 C -0.060 4.060 25 N -0.309 5.309 26 N -0.113 5.113 27 C 0.116 3.884 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.155 0.845 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.103 0.897 37 H 0.364 0.636 38 H 0.240 0.760 39 H 0.205 0.795 40 H 0.218 0.782 41 H 0.114 0.886 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.798 -14.119 -1.170 19.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.076 4.076 3 C -0.210 4.210 4 C -0.181 4.181 5 C 0.359 3.641 6 O -0.445 6.445 7 N -0.343 5.343 8 C -0.045 4.045 9 C 0.046 3.954 10 H 0.118 0.882 11 N -0.375 5.375 12 C -0.467 4.467 13 H 0.100 0.900 14 C -0.290 4.290 15 N -0.617 5.617 16 Si 0.957 3.043 17 H -0.186 1.186 18 H -0.225 1.225 19 H -0.220 1.220 20 C 0.008 3.992 21 H 0.158 0.842 22 N -0.061 5.061 23 C -0.192 4.192 24 C -0.217 4.217 25 N -0.173 5.173 26 N -0.092 5.092 27 C -0.008 4.008 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.173 0.827 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.121 0.879 37 H 0.198 0.802 38 H 0.051 0.949 39 H 0.222 0.778 40 H 0.235 0.765 41 H 0.132 0.868 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.499 -12.645 -0.013 17.780 hybrid contribution -1.560 -0.610 -1.241 2.084 sum -14.059 -13.255 -1.254 19.363 Atomic orbital electron populations 1.20984 0.92149 1.02030 1.02523 1.23929 0.97002 0.97301 0.89334 1.21404 0.96997 0.92086 1.10496 1.21292 0.90127 1.04035 1.02623 1.18541 0.86332 0.83484 0.75759 1.90771 1.14570 1.87285 1.51907 1.48313 1.08977 1.05064 1.71911 1.23721 0.79652 1.00476 1.00688 1.21958 0.83936 0.90698 0.98783 0.88189 1.42481 1.06330 1.62581 1.26092 1.20427 0.91823 1.31178 1.03254 0.90029 1.27213 1.01420 0.97936 1.02420 1.70939 1.34935 1.43121 1.12714 0.82578 0.72884 0.75837 0.73036 1.18644 1.22542 1.22009 1.23323 0.95831 0.98907 0.81118 0.84223 1.47430 1.38136 1.10642 1.09850 1.23883 1.07849 1.02262 0.85216 1.24170 1.03661 0.90736 1.03165 1.75072 1.19058 1.24651 0.98555 1.78359 1.14298 1.03457 1.13062 1.22134 0.93615 0.80242 1.04765 0.92030 0.91479 0.90545 0.82743 0.90821 0.89799 0.91456 0.92022 0.87888 0.80168 0.94926 0.77773 0.76495 0.86831 0.89605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.16 8.45 71.24 0.60 -1.56 16 2 C -0.06 -0.94 9.94 24.52 0.24 -0.70 16 3 C -0.21 -4.30 5.98 -18.71 -0.11 -4.41 16 4 C -0.12 -2.38 8.08 71.23 0.58 -1.81 16 5 C 0.57 14.30 7.74 86.57 0.67 14.97 16 6 O -0.56 -16.51 13.45 -4.08 -0.05 -16.56 16 7 N -0.61 -14.72 3.33 -816.05 -2.71 -17.43 16 8 C 0.08 2.22 4.27 86.85 0.37 2.59 16 9 C 0.16 5.27 3.58 46.39 0.17 5.44 16 10 H 0.10 3.19 8.09 -2.38 -0.02 3.17 16 11 N -0.73 -33.83 5.20 -316.36 -1.65 -35.48 16 12 C -0.34 -17.37 9.96 84.03 0.84 -16.53 16 13 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 14 C -0.10 -5.48 5.50 84.86 0.47 -5.02 16 15 N -0.97 -61.08 13.70 21.65 0.30 -60.79 16 16 Si 1.13 50.18 29.92 68.60 2.05 52.24 16 17 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 18 H -0.30 -13.46 7.11 99.48 0.71 -12.75 16 19 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 20 C 0.11 3.15 3.96 46.18 0.18 3.33 16 21 H 0.14 3.68 8.14 -2.39 -0.02 3.66 16 22 N -0.27 -8.84 2.38 -321.54 -0.77 -9.61 16 23 C -0.04 -1.18 9.36 83.49 0.78 -0.40 16 24 C -0.06 -1.86 12.05 83.73 1.01 -0.85 16 25 N -0.31 -12.50 12.41 -58.25 -0.72 -13.22 16 26 N -0.11 -4.67 12.28 37.02 0.45 -4.21 16 27 C 0.12 2.63 5.92 86.73 0.51 3.14 16 28 H 0.06 1.31 7.41 -2.39 -0.02 1.29 16 29 H 0.07 1.45 7.05 -2.39 -0.02 1.43 16 30 H 0.08 0.96 8.14 -2.39 -0.02 0.95 16 31 H 0.16 1.64 8.03 -2.91 -0.02 1.62 16 32 H 0.07 1.42 7.04 -2.39 -0.02 1.40 16 33 H 0.08 1.26 8.03 -2.39 -0.02 1.25 16 34 H 0.07 1.50 4.87 -2.39 -0.01 1.48 16 35 H 0.06 1.89 6.51 -2.39 -0.02 1.87 16 36 H 0.10 2.75 5.13 -2.39 -0.01 2.74 16 37 H 0.36 18.63 4.83 -92.71 -0.45 18.18 16 38 H 0.24 15.61 6.77 -92.71 -0.63 14.98 16 39 H 0.21 4.67 7.72 -2.91 -0.02 4.64 16 40 H 0.22 4.92 8.06 -2.91 -0.02 4.89 16 41 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.09 1.88 7.19 -2.39 -0.02 1.87 16 Total: -1.00 -73.68 337.75 3.95 -69.72 By element: Atomic # 1 Polarization: 36.39 SS G_CDS: 0.75 Total: 37.14 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: 6.31 Total: -1.80 kcal Atomic # 7 Polarization: -135.64 SS G_CDS: -5.10 Total: -140.74 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.05 Total: -16.56 kcal Atomic # 14 Polarization: 50.18 SS G_CDS: 2.05 Total: 52.24 kcal Total: -73.68 3.95 -69.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070170863.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.829 kcal (2) G-P(sol) polarization free energy of solvation -73.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds