Wall clock time and date at job start Tue Mar 31 2020 09:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.59181 * 2 1 4 4 C 1.53197 * 109.58200 * 120.27816 * 2 1 3 5 5 C 1.53043 * 109.31195 * 174.56360 * 4 2 1 6 6 C 1.53047 * 109.53726 * 298.63632 * 5 4 2 7 7 H 1.09003 * 109.49905 * 301.41085 * 6 5 4 8 8 N 1.46503 * 109.49681 * 181.31525 * 6 5 4 9 9 C 1.34779 * 119.99679 * 154.99930 * 8 6 5 10 10 O 1.21570 * 120.00132 * 359.97438 * 9 8 6 11 11 C 1.47731 * 119.99731 * 180.02562 * 9 8 6 12 12 N 1.33025 * 120.16002 * 5.86848 * 11 9 8 13 13 C 1.31728 * 120.00599 * 179.97438 * 12 11 9 14 14 C 1.38801 * 120.34161 * 0.02562 * 13 12 11 15 15 N 1.32028 * 120.33093 * 359.97438 * 14 13 12 16 16 C 1.32832 * 119.98134 * 359.71375 * 15 14 13 17 17 N 1.38268 * 120.16872 * 180.29363 * 16 15 14 18 18 C 1.53192 * 109.31267 * 61.36490 * 6 5 4 19 19 N 1.46923 * 108.77329 * 305.36361 * 18 6 5 20 20 C 1.36936 * 120.62927 * 233.62683 * 19 18 6 21 21 H 1.08004 * 120.00127 * 149.25624 * 20 19 18 22 22 C 1.38813 * 120.00166 * 329.25656 * 20 19 18 23 23 N 1.31610 * 120.00103 * 347.84199 * 22 20 19 24 24 Si 1.86802 * 119.99928 * 167.83813 * 22 20 19 25 25 H 1.48507 * 109.46995 * 60.00129 * 24 22 20 26 26 H 1.48501 * 109.47067 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47386 * 300.00353 * 24 22 20 28 28 H 1.08996 * 109.47553 * 300.00758 * 1 2 3 29 29 H 1.09002 * 109.46651 * 60.00074 * 1 2 3 30 30 H 1.08995 * 109.47606 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.49984 * 294.51796 * 4 2 1 32 32 H 1.09000 * 109.49890 * 54.61677 * 4 2 1 33 33 H 1.08995 * 109.45860 * 58.65226 * 5 4 2 34 34 H 1.09001 * 109.46035 * 178.61692 * 5 4 2 35 35 H 0.97000 * 119.99873 * 335.00323 * 8 6 5 36 36 H 1.08000 * 119.82625 * 180.02562 * 13 12 11 37 37 H 1.08006 * 119.83125 * 179.97438 * 14 13 12 38 38 H 0.97003 * 119.99784 * 203.24605 * 17 16 15 39 39 H 0.96996 * 120.00331 * 23.25070 * 17 16 15 40 40 H 1.09000 * 109.58503 * 65.15416 * 18 6 5 41 41 H 1.09003 * 109.58752 * 185.43428 * 18 6 5 42 42 H 0.96999 * 120.00298 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0268 0.0000 4 6 2.0434 -0.7277 1.2465 5 6 3.5677 -0.8434 1.1731 6 6 3.9603 -1.6610 -0.0597 7 1 3.5036 -2.6490 -0.0015 8 7 5.4180 -1.7977 -0.1118 9 6 5.9742 -2.8398 -0.7608 10 8 5.2663 -3.6665 -1.3024 11 6 7.4441 -2.9780 -0.8129 12 7 8.2187 -2.1440 -0.1245 13 6 9.5290 -2.2703 -0.1728 14 6 10.1091 -3.2708 -0.9402 15 7 9.3531 -4.1060 -1.6287 16 6 8.0303 -3.9943 -1.5845 17 7 7.2347 -4.8707 -2.2993 18 6 3.4685 -0.9438 -1.3209 19 7 2.0254 -0.6992 -1.1935 20 6 1.1585 -1.1153 -2.1684 21 1 0.1491 -1.3984 -1.9086 22 6 1.5771 -1.1733 -3.4907 23 7 2.7120 -0.6102 -3.8470 24 14 0.5295 -2.0509 -4.7643 25 1 -0.8051 -1.4038 -4.8384 26 1 1.1924 -1.9707 -6.0907 27 1 0.3681 -3.4751 -4.3762 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.7637 -0.1653 2.1372 32 1 1.6048 -1.7245 1.2923 33 1 4.0044 0.1527 1.1023 34 1 3.9379 -1.3391 2.0706 35 1 5.9827 -1.1383 0.3207 36 1 10.1550 -1.5918 0.3876 37 1 11.1844 -3.3666 -0.9741 38 1 6.3332 -4.6138 -2.5490 39 1 7.5779 -5.7422 -2.5510 40 1 3.9921 0.0061 -1.4286 41 1 3.6599 -1.5676 -2.1940 42 1 3.0046 -0.6510 -4.7709 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071396849.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:04:09 Heat of formation + Delta-G solvation = 39.240492 kcal Electronic energy + Delta-G solvation = -25607.415287 eV Core-core repulsion = 22009.175711 eV Total energy + Delta-G solvation = -3598.239576 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.20634 -39.19599 -37.58605 -35.61823 -34.25286 -33.67313 -32.79295 -30.84691 -29.89685 -29.49757 -26.29549 -25.38857 -24.69940 -23.55238 -22.26234 -21.16820 -20.15097 -19.32850 -18.35186 -17.56018 -17.53023 -16.39781 -16.03772 -15.44032 -15.29977 -14.93035 -14.75520 -14.09236 -14.01647 -13.75674 -13.68237 -13.34332 -13.23621 -12.71693 -12.37077 -11.87069 -11.73510 -11.66673 -11.43935 -11.10322 -10.87961 -10.70738 -10.62334 -10.49114 -10.39924 -10.25825 -10.00983 -9.92641 -9.62438 -9.44835 -9.11532 -8.58984 -8.40996 -8.07649 -6.57359 -5.72523 -3.19711 0.53711 1.19372 2.97161 3.24237 3.42087 3.47576 3.48981 3.58059 3.88828 4.15921 4.30581 4.52919 4.62564 5.05606 5.16593 5.24738 5.37650 5.39474 5.52453 5.59433 5.72053 5.99037 6.13431 6.15053 6.29742 6.32907 6.41519 6.47201 6.52049 6.65519 6.76238 6.87887 6.98881 7.06607 7.14882 7.27916 7.33584 7.49885 7.76918 7.84757 7.88755 8.03993 8.51862 8.57074 9.26251 9.89626 10.45925 11.35156 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.015378 B = 0.004590 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.377447 B = 6098.542828 C = 7415.938367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.117 4.117 6 C 0.114 3.886 7 H 0.083 0.917 8 N -0.695 5.695 9 C 0.579 3.421 10 O -0.536 6.536 11 C -0.034 4.034 12 N -0.377 5.377 13 C -0.024 4.024 14 C 0.126 3.874 15 N -0.508 5.508 16 C 0.407 3.593 17 N -0.818 5.818 18 C 0.169 3.831 19 N -0.583 5.583 20 C -0.252 4.252 21 H 0.069 0.931 22 C 0.007 3.993 23 N -0.902 5.902 24 Si 0.902 3.098 25 H -0.283 1.283 26 H -0.291 1.291 27 H -0.283 1.283 28 H 0.038 0.962 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.403 0.597 36 H 0.171 0.829 37 H 0.172 0.828 38 H 0.429 0.571 39 H 0.400 0.600 40 H 0.017 0.983 41 H 0.095 0.905 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.036 -2.991 9.317 15.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.165 4.165 5 C -0.155 4.155 6 C 0.009 3.991 7 H 0.102 0.898 8 N -0.343 5.343 9 C 0.364 3.636 10 O -0.413 6.413 11 C -0.183 4.183 12 N -0.093 5.093 13 C -0.189 4.189 14 C -0.039 4.039 15 N -0.232 5.232 16 C 0.164 3.836 17 N -0.368 5.368 18 C 0.042 3.958 19 N -0.306 5.306 20 C -0.382 4.382 21 H 0.087 0.913 22 C -0.192 4.192 23 N -0.546 5.546 24 Si 0.732 3.268 25 H -0.209 1.209 26 H -0.217 1.217 27 H -0.209 1.209 28 H 0.057 0.943 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.238 0.762 36 H 0.188 0.812 37 H 0.189 0.811 38 H 0.271 0.729 39 H 0.230 0.770 40 H 0.035 0.965 41 H 0.113 0.887 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.395 -3.548 8.714 14.777 hybrid contribution -0.042 -0.288 -0.722 0.778 sum 11.352 -3.835 7.992 14.403 Atomic orbital electron populations 1.21794 0.96001 1.01374 1.00189 1.20495 0.93031 0.93599 0.87055 0.95723 1.22047 0.94262 1.01307 0.98931 1.21680 0.97356 0.99766 0.96675 1.22103 0.77350 1.01065 0.98589 0.89846 1.45857 1.08695 1.25827 1.53941 1.17429 0.84944 0.82062 0.79171 1.90593 1.61676 1.42562 1.46455 1.21620 0.95452 0.99195 1.02042 1.68101 1.06139 1.20881 1.14217 1.23385 0.91273 1.00847 1.03368 1.23764 1.00985 0.89366 0.89808 1.68216 1.03368 1.28986 1.22593 1.19085 0.88384 0.88638 0.87452 1.42848 1.18517 1.17122 1.58328 1.21087 0.83565 0.96999 0.94149 1.43992 1.02550 1.64717 1.19379 1.19099 0.95431 1.37803 0.85839 0.91333 1.25125 0.97574 0.99348 0.97154 1.69965 1.22493 1.45299 1.16868 0.86388 0.79705 0.79924 0.80830 1.20912 1.21720 1.20931 0.94340 0.92020 0.92823 0.92647 0.92086 0.92156 0.93000 0.76223 0.81226 0.81135 0.72889 0.77024 0.96465 0.88658 0.93701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 7.96 37.16 0.30 -2.25 16 2 C 0.16 3.38 3.49 -67.60 -0.24 3.14 16 3 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 4 C -0.13 -2.15 5.37 -26.61 -0.14 -2.29 16 5 C -0.12 -1.93 5.35 -26.68 -0.14 -2.07 16 6 C 0.11 2.24 2.60 -67.81 -0.18 2.06 16 7 H 0.08 1.83 7.58 -51.93 -0.39 1.43 16 8 N -0.69 -12.13 5.07 -54.66 -0.28 -12.40 16 9 C 0.58 10.64 7.75 -12.38 -0.10 10.54 16 10 O -0.54 -11.11 13.46 5.30 0.07 -11.04 16 11 C -0.03 -0.54 6.77 -82.65 -0.56 -1.10 16 12 N -0.38 -5.16 9.72 -9.49 -0.09 -5.25 16 13 C -0.02 -0.24 11.21 -17.39 -0.19 -0.44 16 14 C 0.13 1.23 11.22 -17.26 -0.19 1.03 16 15 N -0.51 -6.60 10.52 -11.99 -0.13 -6.73 16 16 C 0.41 6.05 7.77 -154.87 -1.20 4.85 16 17 N -0.82 -11.36 8.57 31.32 0.27 -11.09 16 18 C 0.17 4.09 4.84 -3.71 -0.02 4.07 16 19 N -0.58 -14.47 2.99 -164.78 -0.49 -14.96 16 20 C -0.25 -6.86 8.57 -15.06 -0.13 -6.98 16 21 H 0.07 1.81 6.26 -52.48 -0.33 1.48 16 22 C 0.01 0.19 5.02 -17.43 -0.09 0.10 16 23 N -0.90 -26.56 11.09 55.49 0.62 -25.94 16 24 Si 0.90 22.15 29.57 -169.99 -5.03 17.12 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 27 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 1.25 7.67 -51.93 -0.40 0.85 16 30 H 0.05 1.02 7.42 -51.93 -0.39 0.63 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.40 6.18 7.97 -40.82 -0.33 5.86 16 36 H 0.17 1.08 8.06 -52.49 -0.42 0.65 16 37 H 0.17 0.93 8.06 -52.48 -0.42 0.50 16 38 H 0.43 6.77 6.02 -40.82 -0.25 6.53 16 39 H 0.40 4.46 8.95 -40.82 -0.37 4.10 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.10 2.69 6.11 -51.93 -0.32 2.37 16 42 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 339.62 15.07 5.12 5.12 Total: -1.00 -32.17 339.62 -8.52 -40.70 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: -5.70 Total: 13.81 kcal Atomic # 6 Polarization: 13.56 SS G_CDS: -2.88 Total: 10.68 kcal Atomic # 7 Polarization: -76.28 SS G_CDS: -0.10 Total: -76.38 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.07 Total: -11.04 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.12 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.17 -8.52 -40.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071396849.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.938 kcal (2) G-P(sol) polarization free energy of solvation -32.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds