Wall clock time and date at job start Tue Mar 31 2020 09:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.59181 * 2 1 4 4 C 1.53197 * 109.58200 * 120.27816 * 2 1 3 5 5 C 1.53043 * 109.31195 * 174.56360 * 4 2 1 6 6 C 1.53047 * 109.53726 * 298.63632 * 5 4 2 7 7 H 1.09003 * 109.49905 * 301.41085 * 6 5 4 8 8 N 1.46503 * 109.49681 * 181.31525 * 6 5 4 9 9 C 1.34779 * 119.99679 * 154.99930 * 8 6 5 10 10 O 1.21570 * 120.00132 * 359.97438 * 9 8 6 11 11 C 1.47731 * 119.99731 * 180.02562 * 9 8 6 12 12 N 1.33025 * 120.16002 * 5.86848 * 11 9 8 13 13 C 1.31728 * 120.00599 * 179.97438 * 12 11 9 14 14 C 1.38801 * 120.34161 * 0.02562 * 13 12 11 15 15 N 1.32028 * 120.33093 * 359.97438 * 14 13 12 16 16 C 1.32832 * 119.98134 * 359.71375 * 15 14 13 17 17 N 1.38268 * 120.16872 * 180.29363 * 16 15 14 18 18 C 1.53192 * 109.31267 * 61.36490 * 6 5 4 19 19 N 1.46923 * 108.77329 * 305.36361 * 18 6 5 20 20 C 1.36936 * 120.62927 * 233.62683 * 19 18 6 21 21 H 1.08004 * 120.00127 * 149.25624 * 20 19 18 22 22 C 1.38813 * 120.00166 * 329.25656 * 20 19 18 23 23 N 1.31610 * 120.00103 * 347.84199 * 22 20 19 24 24 Si 1.86802 * 119.99928 * 167.83813 * 22 20 19 25 25 H 1.48507 * 109.46995 * 60.00129 * 24 22 20 26 26 H 1.48501 * 109.47067 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47386 * 300.00353 * 24 22 20 28 28 H 1.08996 * 109.47553 * 300.00758 * 1 2 3 29 29 H 1.09002 * 109.46651 * 60.00074 * 1 2 3 30 30 H 1.08995 * 109.47606 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.49984 * 294.51796 * 4 2 1 32 32 H 1.09000 * 109.49890 * 54.61677 * 4 2 1 33 33 H 1.08995 * 109.45860 * 58.65226 * 5 4 2 34 34 H 1.09001 * 109.46035 * 178.61692 * 5 4 2 35 35 H 0.97000 * 119.99873 * 335.00323 * 8 6 5 36 36 H 1.08000 * 119.82625 * 180.02562 * 13 12 11 37 37 H 1.08006 * 119.83125 * 179.97438 * 14 13 12 38 38 H 0.97003 * 119.99784 * 203.24605 * 17 16 15 39 39 H 0.96996 * 120.00331 * 23.25070 * 17 16 15 40 40 H 1.09000 * 109.58503 * 65.15416 * 18 6 5 41 41 H 1.09003 * 109.58752 * 185.43428 * 18 6 5 42 42 H 0.96999 * 120.00298 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0268 0.0000 4 6 2.0434 -0.7277 1.2465 5 6 3.5677 -0.8434 1.1731 6 6 3.9603 -1.6610 -0.0597 7 1 3.5036 -2.6490 -0.0015 8 7 5.4180 -1.7977 -0.1118 9 6 5.9742 -2.8398 -0.7608 10 8 5.2663 -3.6665 -1.3024 11 6 7.4441 -2.9780 -0.8129 12 7 8.2187 -2.1440 -0.1245 13 6 9.5290 -2.2703 -0.1728 14 6 10.1091 -3.2708 -0.9402 15 7 9.3531 -4.1060 -1.6287 16 6 8.0303 -3.9943 -1.5845 17 7 7.2347 -4.8707 -2.2993 18 6 3.4685 -0.9438 -1.3209 19 7 2.0254 -0.6992 -1.1935 20 6 1.1585 -1.1153 -2.1684 21 1 0.1491 -1.3984 -1.9086 22 6 1.5771 -1.1733 -3.4907 23 7 2.7120 -0.6102 -3.8470 24 14 0.5295 -2.0509 -4.7643 25 1 -0.8051 -1.4038 -4.8384 26 1 1.1924 -1.9707 -6.0907 27 1 0.3681 -3.4751 -4.3762 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.7637 -0.1653 2.1372 32 1 1.6048 -1.7245 1.2923 33 1 4.0044 0.1527 1.1023 34 1 3.9379 -1.3391 2.0706 35 1 5.9827 -1.1383 0.3207 36 1 10.1550 -1.5918 0.3876 37 1 11.1844 -3.3666 -0.9741 38 1 6.3332 -4.6138 -2.5490 39 1 7.5779 -5.7422 -2.5510 40 1 3.9921 0.0061 -1.4286 41 1 3.6599 -1.5676 -2.1940 42 1 3.0046 -0.6510 -4.7709 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071396849.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:04:08 Heat of formation + Delta-G solvation = 14.452171 kcal Electronic energy + Delta-G solvation = -25608.490190 eV Core-core repulsion = 22009.175711 eV Total energy + Delta-G solvation = -3599.314479 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.24851 -40.61098 -39.18011 -36.74675 -35.76498 -34.72852 -34.61260 -32.30812 -31.74286 -30.62484 -27.84716 -27.03054 -26.07062 -24.56605 -24.00062 -22.58456 -21.68149 -21.00717 -19.43635 -18.77165 -18.51419 -18.31681 -17.36004 -17.05699 -16.66773 -16.14509 -15.94367 -15.73316 -15.43876 -15.25916 -15.06281 -14.91753 -14.46951 -14.29113 -14.11247 -13.50807 -13.06031 -12.76844 -12.73420 -12.70537 -12.66401 -12.55641 -12.31185 -12.13383 -12.00683 -11.66836 -11.60013 -11.45071 -11.20620 -11.12117 -10.54038 -10.16135 -10.12925 -9.12402 -8.59468 -7.83877 -5.33231 -0.46669 0.25092 1.42009 1.46103 1.50994 1.71948 2.03660 2.44814 2.51540 2.83849 3.12822 3.32677 3.41278 3.56822 3.72788 3.94748 4.09137 4.16629 4.21837 4.29887 4.39485 4.49317 4.61468 4.71543 4.81336 4.89274 5.01230 5.07175 5.18575 5.27942 5.31172 5.35222 5.43687 5.55468 5.61549 5.70468 5.79638 5.94160 6.28488 6.40176 6.45776 6.60697 6.95734 7.15723 7.22406 7.89851 8.40417 9.20832 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.015378 B = 0.004590 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.377447 B = 6098.542828 C = 7415.938367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.153 3.847 3 H 0.020 0.980 4 C -0.117 4.117 5 C -0.109 4.109 6 C 0.130 3.870 7 H 0.057 0.943 8 N -0.689 5.689 9 C 0.572 3.428 10 O -0.572 6.572 11 C -0.074 4.074 12 N -0.390 5.390 13 C -0.010 4.010 14 C 0.144 3.856 15 N -0.519 5.519 16 C 0.392 3.608 17 N -0.821 5.821 18 C 0.182 3.818 19 N -0.602 5.602 20 C -0.252 4.252 21 H 0.075 0.925 22 C -0.052 4.052 23 N -0.936 5.936 24 Si 0.960 3.040 25 H -0.269 1.269 26 H -0.298 1.298 27 H -0.282 1.282 28 H 0.078 0.922 29 H 0.037 0.963 30 H 0.046 0.954 31 H 0.096 0.904 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.414 0.586 36 H 0.217 0.783 37 H 0.225 0.775 38 H 0.419 0.581 39 H 0.410 0.590 40 H -0.007 1.007 41 H 0.047 0.953 42 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.757 -2.587 11.841 18.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.048 3.952 3 H 0.038 0.962 4 C -0.156 4.156 5 C -0.147 4.147 6 C 0.024 3.976 7 H 0.076 0.924 8 N -0.339 5.339 9 C 0.359 3.641 10 O -0.452 6.452 11 C -0.219 4.219 12 N -0.107 5.107 13 C -0.178 4.178 14 C -0.023 4.023 15 N -0.242 5.242 16 C 0.151 3.849 17 N -0.370 5.370 18 C 0.055 3.945 19 N -0.326 5.326 20 C -0.382 4.382 21 H 0.092 0.908 22 C -0.247 4.247 23 N -0.582 5.582 24 Si 0.788 3.212 25 H -0.195 1.195 26 H -0.224 1.224 27 H -0.209 1.209 28 H 0.097 0.903 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.114 0.886 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.251 0.749 36 H 0.234 0.766 37 H 0.241 0.759 38 H 0.258 0.742 39 H 0.241 0.759 40 H 0.011 0.989 41 H 0.065 0.935 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 13.074 -3.155 11.271 17.548 hybrid contribution -0.360 -0.358 -1.438 1.525 sum 12.714 -3.513 9.832 16.452 Atomic orbital electron populations 1.21723 0.94627 1.01205 1.01054 1.20807 0.94342 0.93329 0.86748 0.96211 1.21950 0.94254 1.00997 0.98390 1.21654 0.97269 0.99888 0.95841 1.21635 0.78553 0.99476 0.97935 0.92448 1.45694 1.07802 1.26196 1.54159 1.17958 0.86432 0.81529 0.78203 1.90563 1.63070 1.43805 1.47755 1.21122 0.94010 1.01620 1.05112 1.68061 1.07747 1.20720 1.14164 1.24270 0.90250 1.00889 1.02375 1.24738 1.03041 0.87372 0.87103 1.68343 1.02379 1.30005 1.23478 1.19198 0.89304 0.88725 0.87648 1.42779 1.18093 1.17714 1.58412 1.20742 0.83767 0.95171 0.94823 1.44288 1.02407 1.65584 1.20364 1.19456 0.95890 1.36383 0.86477 0.90777 1.25855 0.98872 1.00807 0.99163 1.70148 1.24268 1.47354 1.16431 0.85454 0.78696 0.78803 0.78231 1.19489 1.22415 1.20881 0.90278 0.94334 0.93440 0.88578 0.92726 0.91117 0.89846 0.74871 0.76630 0.75914 0.74187 0.75892 0.98883 0.93455 0.94683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.65 7.96 71.98 0.57 -4.08 16 2 C 0.15 6.16 3.49 44.98 0.16 6.32 16 3 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 4 C -0.12 -3.70 5.37 30.67 0.16 -3.53 16 5 C -0.11 -3.38 5.35 30.62 0.16 -3.22 16 6 C 0.13 5.24 2.60 45.07 0.12 5.36 16 7 H 0.06 2.62 7.58 -2.39 -0.02 2.60 16 8 N -0.69 -24.75 5.07 -445.12 -2.26 -27.01 16 9 C 0.57 22.09 7.75 86.75 0.67 22.76 16 10 O -0.57 -25.57 13.46 -3.94 -0.05 -25.63 16 11 C -0.07 -2.36 6.77 42.01 0.28 -2.07 16 12 N -0.39 -10.07 9.72 -183.94 -1.79 -11.85 16 13 C -0.01 -0.17 11.21 84.84 0.95 0.78 16 14 C 0.14 2.22 11.22 84.80 0.95 3.17 16 15 N -0.52 -12.50 10.52 -191.86 -2.02 -14.52 16 16 C 0.39 11.74 7.77 133.50 1.04 12.78 16 17 N -0.82 -24.08 8.57 -54.84 -0.47 -24.55 16 18 C 0.18 9.30 4.84 86.36 0.42 9.71 16 19 N -0.60 -30.80 2.99 -675.23 -2.02 -32.81 16 20 C -0.25 -14.12 8.57 84.03 0.72 -13.40 16 21 H 0.07 3.99 6.26 -2.91 -0.02 3.97 16 22 C -0.05 -3.04 5.02 84.86 0.43 -2.61 16 23 N -0.94 -58.19 11.09 21.65 0.24 -57.95 16 24 Si 0.96 47.23 29.57 68.60 2.03 49.26 16 25 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 26 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 27 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 28 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.04 1.54 7.67 -2.39 -0.02 1.52 16 30 H 0.05 1.75 7.42 -2.39 -0.02 1.73 16 31 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.41 12.69 7.97 -92.71 -0.74 11.95 16 36 H 0.22 1.46 8.06 -2.91 -0.02 1.44 16 37 H 0.22 1.02 8.06 -2.91 -0.02 0.99 16 38 H 0.42 14.41 6.02 -92.71 -0.56 13.85 16 39 H 0.41 9.61 8.95 -92.71 -0.83 8.78 16 40 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 41 H 0.05 2.87 6.11 -2.39 -0.01 2.85 16 42 H 0.24 14.94 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -76.53 339.62 -0.74 -77.27 By element: Atomic # 1 Polarization: 36.87 SS G_CDS: -1.05 Total: 35.82 kcal Atomic # 6 Polarization: 25.33 SS G_CDS: 6.64 Total: 31.97 kcal Atomic # 7 Polarization: -160.38 SS G_CDS: -8.31 Total: -168.69 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.05 Total: -25.63 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal Total: -76.53 -0.74 -77.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071396849.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.721 kcal (2) G-P(sol) polarization free energy of solvation -76.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds