Wall clock time and date at job start Tue Mar 31 2020 09:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.58405 * 2 1 4 4 C 1.53195 * 109.58719 * 120.42770 * 2 1 3 5 5 C 1.53036 * 109.31008 * 174.42291 * 4 2 1 6 6 C 1.53036 * 109.53908 * 298.63005 * 5 4 2 7 7 H 1.09003 * 109.49829 * 181.31692 * 6 5 4 8 8 N 1.46499 * 109.50036 * 301.41803 * 6 5 4 9 9 C 1.34778 * 119.99969 * 204.83847 * 8 6 5 10 10 O 1.21565 * 120.00037 * 359.97438 * 9 8 6 11 11 C 1.47724 * 119.99762 * 179.97438 * 9 8 6 12 12 N 1.33021 * 120.16444 * 5.41124 * 11 9 8 13 13 C 1.31732 * 120.00984 * 179.97438 * 12 11 9 14 14 C 1.38805 * 120.34102 * 0.02562 * 13 12 11 15 15 N 1.32022 * 120.33013 * 0.02562 * 14 13 12 16 16 C 1.32837 * 119.98280 * 359.66839 * 15 14 13 17 17 N 1.38274 * 120.17282 * 180.30038 * 16 15 14 18 18 C 1.53194 * 109.31276 * 61.36923 * 6 5 4 19 19 N 1.46923 * 109.58593 * 239.71429 * 2 1 3 20 20 C 1.36942 * 120.63165 * 6.62502 * 19 2 1 21 21 H 1.08004 * 120.00120 * 329.58358 * 20 19 2 22 22 C 1.38811 * 120.00048 * 149.58438 * 20 19 2 23 23 N 1.31622 * 120.00203 * 345.78809 * 22 20 19 24 24 Si 1.86803 * 120.00122 * 165.79082 * 22 20 19 25 25 H 1.48501 * 109.47160 * 89.99584 * 24 22 20 26 26 H 1.48497 * 109.47254 * 210.00120 * 24 22 20 27 27 H 1.48504 * 109.47063 * 329.99936 * 24 22 20 28 28 H 1.08999 * 109.47101 * 180.28513 * 1 2 3 29 29 H 1.08998 * 109.47445 * 300.28292 * 1 2 3 30 30 H 1.09000 * 109.47421 * 60.28844 * 1 2 3 31 31 H 1.09000 * 109.49104 * 294.37357 * 4 2 1 32 32 H 1.08998 * 109.49582 * 54.46925 * 4 2 1 33 33 H 1.09004 * 109.45897 * 178.61122 * 5 4 2 34 34 H 1.09007 * 109.46307 * 58.65659 * 5 4 2 35 35 H 0.97001 * 119.99958 * 24.83029 * 8 6 5 36 36 H 1.07997 * 119.82523 * 179.97438 * 13 12 11 37 37 H 1.08000 * 119.83424 * 179.97438 * 14 13 12 38 38 H 0.96992 * 120.00117 * 155.98830 * 17 16 15 39 39 H 0.97005 * 119.99251 * 335.98551 * 17 16 15 40 40 H 1.08997 * 109.59060 * 185.57600 * 18 6 5 41 41 H 1.09000 * 109.58923 * 65.14995 * 18 6 5 42 42 H 0.96991 * 120.00075 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7310 1.2445 5 6 3.5675 -0.8494 1.1690 6 6 3.9569 -1.6656 -0.0655 7 1 5.0412 -1.7694 -0.1059 8 7 3.3405 -2.9924 0.0111 9 6 3.8953 -4.0320 -0.6432 10 8 4.9068 -3.8685 -1.2973 11 6 3.2740 -5.3700 -0.5655 12 7 2.1107 -5.5315 0.0590 13 6 1.5592 -6.7260 0.1260 14 6 2.1861 -7.8212 -0.4520 15 7 3.3415 -7.6764 -1.0742 16 6 3.9062 -6.4768 -1.1548 17 7 5.1132 -6.3195 -1.8109 18 6 3.4650 -0.9453 -1.3249 19 7 2.0225 -0.6981 -1.1953 20 6 1.1537 -1.1101 -2.1703 21 1 0.1423 -1.3863 -1.9109 22 6 1.5728 -1.1727 -3.4922 23 7 2.6915 -0.5827 -3.8565 24 14 0.5492 -2.0945 -4.7539 25 1 -0.4325 -1.1654 -5.3691 26 1 1.4394 -2.6432 -5.8082 27 1 -0.1733 -3.2076 -4.0875 28 1 -0.3633 -1.0276 0.0051 29 1 -0.3634 0.5182 0.8874 30 1 -0.3634 0.5093 -0.8925 31 1 1.7660 -0.1694 2.1366 32 1 1.6030 -1.7269 1.2892 33 1 3.9378 -1.3473 2.0652 34 1 4.0061 0.1461 1.0995 35 1 2.5332 -3.1228 0.5328 36 1 0.6148 -6.8538 0.6341 37 1 1.7268 -8.7968 -0.3918 38 1 5.3578 -5.4548 -2.1758 39 1 5.7153 -7.0742 -1.9062 40 1 3.6518 -1.5690 -2.1991 41 1 3.9902 0.0038 -1.4318 42 1 2.9846 -0.6268 -4.7801 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071396850.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:04:11 Heat of formation + Delta-G solvation = 42.018887 kcal Electronic energy + Delta-G solvation = -26375.444541 eV Core-core repulsion = 22777.325444 eV Total energy + Delta-G solvation = -3598.119096 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.07596 -39.21729 -37.54842 -35.44563 -34.00181 -33.54532 -32.68844 -30.82338 -29.89071 -29.38834 -26.31926 -25.34375 -24.78699 -23.46693 -22.15219 -21.28090 -20.35275 -18.72177 -18.27777 -17.58000 -17.43232 -16.35885 -15.76801 -15.41451 -15.27302 -14.81824 -14.54656 -14.14068 -14.01947 -13.73964 -13.60491 -13.27801 -13.02338 -12.77469 -12.46648 -11.91512 -11.58281 -11.53682 -11.20791 -11.12656 -10.94799 -10.84248 -10.68532 -10.45255 -10.36012 -10.30042 -9.93788 -9.84869 -9.50322 -9.42671 -9.00144 -8.44333 -8.42354 -7.95165 -6.54574 -5.72194 -3.16534 0.67143 1.32759 3.11944 3.37384 3.39062 3.46509 3.47675 3.74640 4.03735 4.32264 4.43048 4.52692 4.75688 5.18650 5.29833 5.34486 5.37968 5.39384 5.50180 5.54850 5.63239 6.04424 6.15076 6.16900 6.27156 6.36679 6.39313 6.48001 6.54452 6.65486 6.70261 6.89134 7.06433 7.10271 7.16876 7.34995 7.39890 7.64132 7.71774 7.87295 8.01479 8.18876 8.52930 8.72430 9.27128 9.91155 10.47744 11.35829 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.012056 B = 0.006283 C = 0.005347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.028528 B = 4455.539345 C = 5235.211274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.132 4.132 5 C -0.118 4.118 6 C 0.115 3.885 7 H 0.077 0.923 8 N -0.673 5.673 9 C 0.582 3.418 10 O -0.551 6.551 11 C -0.028 4.028 12 N -0.372 5.372 13 C -0.021 4.021 14 C 0.122 3.878 15 N -0.509 5.509 16 C 0.404 3.596 17 N -0.823 5.823 18 C 0.163 3.837 19 N -0.581 5.581 20 C -0.245 4.245 21 H 0.067 0.933 22 C 0.005 3.995 23 N -0.900 5.900 24 Si 0.894 3.106 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.281 1.281 28 H 0.052 0.948 29 H 0.036 0.964 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.071 0.929 35 H 0.406 0.594 36 H 0.170 0.830 37 H 0.171 0.829 38 H 0.429 0.571 39 H 0.398 0.602 40 H 0.095 0.905 41 H 0.027 0.973 42 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.676 -9.563 10.694 14.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.059 3.941 3 H 0.042 0.958 4 C -0.171 4.171 5 C -0.156 4.156 6 C 0.009 3.991 7 H 0.095 0.905 8 N -0.321 5.321 9 C 0.367 3.633 10 O -0.430 6.430 11 C -0.177 4.177 12 N -0.089 5.089 13 C -0.186 4.186 14 C -0.043 4.043 15 N -0.232 5.232 16 C 0.161 3.839 17 N -0.375 5.375 18 C 0.036 3.964 19 N -0.305 5.305 20 C -0.374 4.374 21 H 0.084 0.916 22 C -0.193 4.193 23 N -0.545 5.545 24 Si 0.724 3.276 25 H -0.214 1.214 26 H -0.217 1.217 27 H -0.207 1.207 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.243 0.757 36 H 0.187 0.813 37 H 0.188 0.812 38 H 0.272 0.728 39 H 0.227 0.773 40 H 0.113 0.887 41 H 0.045 0.955 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.513 -9.256 10.033 13.734 hybrid contribution -0.746 -0.677 -0.777 1.273 sum 0.766 -9.933 9.256 13.598 Atomic orbital electron populations 1.21794 0.96123 1.01271 1.00130 1.20466 0.92935 0.93576 0.87139 0.95756 1.22076 0.95077 1.00897 0.99063 1.21686 0.97161 1.00095 0.96684 1.21897 0.96981 0.81640 0.98587 0.90470 1.45631 1.29167 1.07918 1.49387 1.17341 0.83449 0.82832 0.79657 1.90472 1.25978 1.83746 1.42831 1.21644 0.96124 0.95571 1.04329 1.68135 1.06211 1.24841 1.09702 1.23398 1.02503 0.88444 1.04237 1.23736 0.89797 1.00538 0.90205 1.68192 1.12021 1.23243 1.19756 1.19100 0.87783 0.89189 0.87818 1.42886 1.16332 1.17798 1.60457 1.21173 0.83923 0.97018 0.94254 1.44010 1.02622 1.64862 1.18966 1.19056 0.95176 1.37386 0.85826 0.91582 1.25061 0.97703 0.99550 0.97019 1.69973 1.23447 1.44413 1.16626 0.86431 0.79589 0.79903 0.81669 1.21420 1.21740 1.20687 0.92895 0.94450 0.92083 0.92833 0.92427 0.93011 0.91015 0.75682 0.81299 0.81238 0.72813 0.77313 0.88653 0.95529 0.93771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 7.95 37.16 0.30 -2.20 16 2 C 0.17 3.29 3.50 -67.60 -0.24 3.05 16 3 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.14 5.21 -26.61 -0.14 -2.28 16 5 C -0.12 -1.88 5.58 -26.69 -0.15 -2.03 16 6 C 0.11 2.18 2.81 -67.81 -0.19 1.99 16 7 H 0.08 1.47 7.58 -51.93 -0.39 1.08 16 8 N -0.67 -12.61 4.90 -54.67 -0.27 -12.88 16 9 C 0.58 11.37 7.76 -12.38 -0.10 11.28 16 10 O -0.55 -11.49 13.41 5.31 0.07 -11.42 16 11 C -0.03 -0.48 6.77 -82.65 -0.56 -1.04 16 12 N -0.37 -5.96 9.71 -9.49 -0.09 -6.05 16 13 C -0.02 -0.26 11.21 -17.38 -0.19 -0.45 16 14 C 0.12 1.39 11.22 -17.26 -0.19 1.19 16 15 N -0.51 -7.29 10.52 -11.99 -0.13 -7.42 16 16 C 0.40 6.51 7.77 -154.86 -1.20 5.31 16 17 N -0.82 -11.92 8.64 31.32 0.27 -11.65 16 18 C 0.16 3.86 4.87 -3.71 -0.02 3.84 16 19 N -0.58 -13.86 2.90 -164.77 -0.48 -14.34 16 20 C -0.24 -6.52 8.56 -15.06 -0.13 -6.65 16 21 H 0.07 1.74 6.25 -52.48 -0.33 1.41 16 22 C 0.01 0.15 4.97 -17.43 -0.09 0.06 16 23 N -0.90 -26.40 11.19 55.49 0.62 -25.78 16 24 Si 0.89 22.39 29.58 -169.99 -5.03 17.36 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 27 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 28 H 0.05 0.99 7.44 -51.93 -0.39 0.60 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 1.23 7.63 -51.93 -0.40 0.83 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.96 6.40 -51.93 -0.33 0.62 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.41 7.33 6.13 -40.82 -0.25 7.08 16 36 H 0.17 1.44 8.06 -52.49 -0.42 1.02 16 37 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.43 6.90 5.87 -40.82 -0.24 6.66 16 39 H 0.40 4.58 8.95 -40.82 -0.37 4.22 16 40 H 0.10 2.65 6.15 -51.93 -0.32 2.33 16 41 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 336.05 15.07 5.06 5.06 Total: -1.00 -31.67 336.05 -8.39 -40.06 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: -5.53 Total: 14.99 kcal Atomic # 6 Polarization: 14.97 SS G_CDS: -2.90 Total: 12.07 kcal Atomic # 7 Polarization: -78.05 SS G_CDS: -0.07 Total: -78.12 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.07 Total: -11.42 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.03 Total: 17.36 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.67 -8.39 -40.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071396850.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.080 kcal (2) G-P(sol) polarization free energy of solvation -31.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds