Wall clock time and date at job start Tue Mar 31 2020 09:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.58405 * 2 1 4 4 C 1.53195 * 109.58719 * 120.42770 * 2 1 3 5 5 C 1.53036 * 109.31008 * 174.42291 * 4 2 1 6 6 C 1.53036 * 109.53908 * 298.63005 * 5 4 2 7 7 H 1.09003 * 109.49829 * 181.31692 * 6 5 4 8 8 N 1.46499 * 109.50036 * 301.41803 * 6 5 4 9 9 C 1.34778 * 119.99969 * 204.83847 * 8 6 5 10 10 O 1.21565 * 120.00037 * 359.97438 * 9 8 6 11 11 C 1.47724 * 119.99762 * 179.97438 * 9 8 6 12 12 N 1.33021 * 120.16444 * 5.41124 * 11 9 8 13 13 C 1.31732 * 120.00984 * 179.97438 * 12 11 9 14 14 C 1.38805 * 120.34102 * 0.02562 * 13 12 11 15 15 N 1.32022 * 120.33013 * 0.02562 * 14 13 12 16 16 C 1.32837 * 119.98280 * 359.66839 * 15 14 13 17 17 N 1.38274 * 120.17282 * 180.30038 * 16 15 14 18 18 C 1.53194 * 109.31276 * 61.36923 * 6 5 4 19 19 N 1.46923 * 109.58593 * 239.71429 * 2 1 3 20 20 C 1.36942 * 120.63165 * 6.62502 * 19 2 1 21 21 H 1.08004 * 120.00120 * 329.58358 * 20 19 2 22 22 C 1.38811 * 120.00048 * 149.58438 * 20 19 2 23 23 N 1.31622 * 120.00203 * 345.78809 * 22 20 19 24 24 Si 1.86803 * 120.00122 * 165.79082 * 22 20 19 25 25 H 1.48501 * 109.47160 * 89.99584 * 24 22 20 26 26 H 1.48497 * 109.47254 * 210.00120 * 24 22 20 27 27 H 1.48504 * 109.47063 * 329.99936 * 24 22 20 28 28 H 1.08999 * 109.47101 * 180.28513 * 1 2 3 29 29 H 1.08998 * 109.47445 * 300.28292 * 1 2 3 30 30 H 1.09000 * 109.47421 * 60.28844 * 1 2 3 31 31 H 1.09000 * 109.49104 * 294.37357 * 4 2 1 32 32 H 1.08998 * 109.49582 * 54.46925 * 4 2 1 33 33 H 1.09004 * 109.45897 * 178.61122 * 5 4 2 34 34 H 1.09007 * 109.46307 * 58.65659 * 5 4 2 35 35 H 0.97001 * 119.99958 * 24.83029 * 8 6 5 36 36 H 1.07997 * 119.82523 * 179.97438 * 13 12 11 37 37 H 1.08000 * 119.83424 * 179.97438 * 14 13 12 38 38 H 0.96992 * 120.00117 * 155.98830 * 17 16 15 39 39 H 0.97005 * 119.99251 * 335.98551 * 17 16 15 40 40 H 1.08997 * 109.59060 * 185.57600 * 18 6 5 41 41 H 1.09000 * 109.58923 * 65.14995 * 18 6 5 42 42 H 0.96991 * 120.00075 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7310 1.2445 5 6 3.5675 -0.8494 1.1690 6 6 3.9569 -1.6656 -0.0655 7 1 5.0412 -1.7694 -0.1059 8 7 3.3405 -2.9924 0.0111 9 6 3.8953 -4.0320 -0.6432 10 8 4.9068 -3.8685 -1.2973 11 6 3.2740 -5.3700 -0.5655 12 7 2.1107 -5.5315 0.0590 13 6 1.5592 -6.7260 0.1260 14 6 2.1861 -7.8212 -0.4520 15 7 3.3415 -7.6764 -1.0742 16 6 3.9062 -6.4768 -1.1548 17 7 5.1132 -6.3195 -1.8109 18 6 3.4650 -0.9453 -1.3249 19 7 2.0225 -0.6981 -1.1953 20 6 1.1537 -1.1101 -2.1703 21 1 0.1423 -1.3863 -1.9109 22 6 1.5728 -1.1727 -3.4922 23 7 2.6915 -0.5827 -3.8565 24 14 0.5492 -2.0945 -4.7539 25 1 -0.4325 -1.1654 -5.3691 26 1 1.4394 -2.6432 -5.8082 27 1 -0.1733 -3.2076 -4.0875 28 1 -0.3633 -1.0276 0.0051 29 1 -0.3634 0.5182 0.8874 30 1 -0.3634 0.5093 -0.8925 31 1 1.7660 -0.1694 2.1366 32 1 1.6030 -1.7269 1.2892 33 1 3.9378 -1.3473 2.0652 34 1 4.0061 0.1461 1.0995 35 1 2.5332 -3.1228 0.5328 36 1 0.6148 -6.8538 0.6341 37 1 1.7268 -8.7968 -0.3918 38 1 5.3578 -5.4548 -2.1758 39 1 5.7153 -7.0742 -1.9062 40 1 3.6518 -1.5690 -2.1991 41 1 3.9902 0.0038 -1.4318 42 1 2.9846 -0.6268 -4.7801 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071396850.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:04:11 Heat of formation + Delta-G solvation = 18.198654 kcal Electronic energy + Delta-G solvation = -26376.477463 eV Core-core repulsion = 22777.325444 eV Total energy + Delta-G solvation = -3599.152019 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.21701 -40.67094 -39.10117 -36.63010 -35.61007 -34.67583 -34.46574 -32.27295 -31.73233 -30.56198 -27.90999 -26.94553 -26.22088 -24.57055 -23.88433 -22.64515 -21.95298 -20.36072 -19.48527 -18.82200 -18.48902 -18.20580 -17.13637 -17.02106 -16.71497 -16.09904 -15.90509 -15.74580 -15.48665 -15.25123 -15.04338 -14.69358 -14.39452 -14.29691 -14.00926 -13.64996 -12.97757 -12.90211 -12.71063 -12.64891 -12.60520 -12.54020 -12.42222 -12.14960 -12.08348 -11.57814 -11.54673 -11.27919 -11.17157 -11.03896 -10.53071 -10.12850 -9.99424 -9.09204 -8.53421 -7.81806 -5.27048 -0.43543 0.26533 1.36651 1.39423 1.46067 1.79240 2.16029 2.48334 2.52642 2.87285 3.20572 3.33563 3.43920 3.63691 3.65275 4.02112 4.11615 4.18336 4.19829 4.29813 4.48839 4.50609 4.65946 4.75481 4.83643 4.97896 5.04825 5.09609 5.12308 5.27757 5.32641 5.35597 5.57609 5.62156 5.66385 5.74129 5.75195 5.98730 6.32255 6.45788 6.49887 6.67677 7.00130 7.20077 7.29651 7.94191 8.44919 9.23008 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.012056 B = 0.006283 C = 0.005347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.028528 B = 4455.539345 C = 5235.211274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.154 3.846 3 H 0.017 0.983 4 C -0.120 4.120 5 C -0.110 4.110 6 C 0.124 3.876 7 H 0.072 0.928 8 N -0.670 5.670 9 C 0.573 3.427 10 O -0.578 6.578 11 C -0.070 4.070 12 N -0.392 5.392 13 C -0.014 4.014 14 C 0.140 3.860 15 N -0.518 5.518 16 C 0.390 3.610 17 N -0.822 5.822 18 C 0.173 3.827 19 N -0.593 5.593 20 C -0.231 4.231 21 H 0.071 0.929 22 C -0.054 4.054 23 N -0.934 5.934 24 Si 0.946 3.054 25 H -0.281 1.281 26 H -0.304 1.304 27 H -0.275 1.275 28 H 0.048 0.952 29 H 0.076 0.924 30 H 0.035 0.965 31 H 0.091 0.909 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.411 0.589 36 H 0.213 0.787 37 H 0.224 0.776 38 H 0.421 0.579 39 H 0.409 0.591 40 H 0.048 0.952 41 H 0.001 0.999 42 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.412 -11.498 13.458 17.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.049 3.951 3 H 0.035 0.965 4 C -0.159 4.159 5 C -0.148 4.148 6 C 0.018 3.982 7 H 0.090 0.910 8 N -0.319 5.319 9 C 0.359 3.641 10 O -0.459 6.459 11 C -0.216 4.216 12 N -0.109 5.109 13 C -0.181 4.181 14 C -0.025 4.025 15 N -0.241 5.241 16 C 0.149 3.851 17 N -0.373 5.373 18 C 0.046 3.954 19 N -0.317 5.317 20 C -0.362 4.362 21 H 0.088 0.912 22 C -0.248 4.248 23 N -0.581 5.581 24 Si 0.776 3.224 25 H -0.208 1.208 26 H -0.231 1.231 27 H -0.200 1.200 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.054 0.946 31 H 0.109 0.891 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.248 0.752 36 H 0.229 0.771 37 H 0.240 0.760 38 H 0.261 0.739 39 H 0.240 0.760 40 H 0.066 0.934 41 H 0.019 0.981 42 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -0.559 -11.177 12.828 17.023 hybrid contribution -0.208 -0.193 -1.558 1.584 sum -0.767 -11.369 11.269 16.026 Atomic orbital electron populations 1.21717 0.94814 1.01193 1.00800 1.20774 0.94143 0.93268 0.86950 0.96527 1.21954 0.94833 1.00865 0.98227 1.21666 0.97251 1.00025 0.95893 1.21628 0.96588 0.82077 0.97903 0.91001 1.45547 1.29333 1.07484 1.49502 1.17838 0.83289 0.83988 0.78987 1.90446 1.27211 1.84517 1.43765 1.21283 0.97876 0.94766 1.07664 1.68078 1.05877 1.26971 1.09980 1.24228 1.03385 0.87347 1.03124 1.24684 0.88176 1.02562 0.87128 1.68329 1.13281 1.22015 1.20467 1.19219 0.88198 0.89670 0.88032 1.42811 1.16537 1.17791 1.60120 1.20855 0.84188 0.95381 0.94994 1.44210 1.02245 1.65519 1.19723 1.19338 0.95434 1.35208 0.86247 0.91162 1.25702 0.98928 1.01302 0.98910 1.70139 1.25234 1.46665 1.16099 0.85581 0.78190 0.79038 0.79579 1.20798 1.23132 1.19973 0.93280 0.90563 0.94618 0.89103 0.92351 0.89869 0.90418 0.75178 0.77091 0.75995 0.73876 0.75959 0.93368 0.98102 0.94857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.44 7.95 71.98 0.57 -3.87 16 2 C 0.15 5.91 3.50 44.98 0.16 6.07 16 3 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 4 C -0.12 -3.53 5.21 30.67 0.16 -3.37 16 5 C -0.11 -3.28 5.58 30.62 0.17 -3.11 16 6 C 0.12 4.79 2.81 45.07 0.13 4.92 16 7 H 0.07 2.83 7.58 -2.39 -0.02 2.82 16 8 N -0.67 -25.29 4.90 -445.15 -2.18 -27.47 16 9 C 0.57 23.06 7.76 86.75 0.67 23.73 16 10 O -0.58 -25.52 13.41 -3.92 -0.05 -25.57 16 11 C -0.07 -2.47 6.77 42.01 0.28 -2.19 16 12 N -0.39 -11.88 9.71 -183.94 -1.79 -13.67 16 13 C -0.01 -0.28 11.21 84.84 0.95 0.67 16 14 C 0.14 2.62 11.22 84.80 0.95 3.57 16 15 N -0.52 -13.68 10.52 -191.85 -2.02 -15.70 16 16 C 0.39 12.46 7.77 133.50 1.04 13.50 16 17 N -0.82 -24.46 8.64 -54.82 -0.47 -24.94 16 18 C 0.17 8.55 4.87 86.36 0.42 8.97 16 19 N -0.59 -28.73 2.90 -675.22 -1.96 -30.69 16 20 C -0.23 -12.54 8.56 84.03 0.72 -11.82 16 21 H 0.07 3.70 6.25 -2.91 -0.02 3.68 16 22 C -0.05 -3.10 4.97 84.86 0.42 -2.68 16 23 N -0.93 -57.68 11.19 21.65 0.24 -57.44 16 24 Si 0.95 47.33 29.58 68.60 2.03 49.35 16 25 H -0.28 -13.63 7.11 99.48 0.71 -12.93 16 26 H -0.30 -15.71 7.11 99.48 0.71 -15.00 16 27 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 28 H 0.05 1.73 7.44 -2.39 -0.02 1.71 16 29 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.03 1.39 7.63 -2.39 -0.02 1.37 16 31 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.06 1.75 6.40 -2.39 -0.02 1.73 16 33 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 34 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 35 H 0.41 14.48 6.13 -92.71 -0.57 13.91 16 36 H 0.21 2.42 8.06 -2.91 -0.02 2.40 16 37 H 0.22 1.68 8.06 -2.91 -0.02 1.66 16 38 H 0.42 14.35 5.87 -92.71 -0.54 13.81 16 39 H 0.41 9.59 8.95 -92.70 -0.83 8.76 16 40 H 0.05 2.85 6.15 -2.39 -0.01 2.83 16 41 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 42 H 0.24 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -74.03 336.05 -0.42 -74.45 By element: Atomic # 1 Polarization: 38.15 SS G_CDS: -0.86 Total: 37.29 kcal Atomic # 6 Polarization: 27.74 SS G_CDS: 6.65 Total: 34.39 kcal Atomic # 7 Polarization: -161.73 SS G_CDS: -8.18 Total: -169.91 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.05 Total: -25.57 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.35 kcal Total: -74.03 -0.42 -74.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071396850.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.646 kcal (2) G-P(sol) polarization free energy of solvation -74.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds