Wall clock time and date at job start Tue Mar 31 2020 09:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47647 * 2 1 4 4 C 1.50705 * 109.46995 * 240.00044 * 2 1 3 5 5 O 1.21285 * 119.99907 * 240.00024 * 4 2 1 6 6 N 1.34776 * 119.99857 * 59.72497 * 4 2 1 7 7 C 1.46500 * 119.99491 * 180.02562 * 6 4 2 8 8 H 1.08993 * 110.56444 * 32.10337 * 7 6 4 9 9 C 1.54852 * 110.62507 * 269.02343 * 7 6 4 10 10 C 1.55855 * 103.44688 * 241.51574 * 9 7 6 11 11 H 1.08993 * 116.12710 * 159.14753 * 10 9 7 12 12 C 1.55840 * 105.05938 * 288.17533 * 10 9 7 13 13 C 1.54852 * 103.44644 * 71.82436 * 12 10 9 14 14 C 1.55843 * 103.44452 * 359.97438 * 13 12 10 15 15 H 1.09002 * 116.12318 * 159.14871 * 14 13 12 16 16 N 1.50229 * 101.05034 * 32.93859 * 14 13 12 17 17 C 1.36941 * 130.83873 * 126.01331 * 16 14 13 18 18 H 1.08006 * 119.99745 * 171.59967 * 17 16 14 19 19 C 1.38813 * 120.00130 * 351.59705 * 17 16 14 20 20 N 1.31616 * 120.00074 * 157.94692 * 19 17 16 21 21 Si 1.86799 * 119.99680 * 337.94302 * 19 17 16 22 22 H 1.48504 * 109.47047 * 93.13665 * 21 19 17 23 23 H 1.48503 * 109.47001 * 213.13203 * 21 19 17 24 24 H 1.48494 * 109.47535 * 333.13676 * 21 19 17 25 25 N 1.46506 * 109.47152 * 120.00286 * 2 1 3 26 26 C 1.34425 * 126.82493 * 34.99787 * 25 2 1 27 27 N 1.30829 * 108.07825 * 179.97438 * 26 25 2 28 28 C 1.33234 * 109.83032 * 0.02562 * 27 26 25 29 29 N 1.30719 * 108.94394 * 359.74874 * 28 27 26 30 30 H 1.08996 * 109.46922 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46873 * 300.00081 * 1 2 3 32 32 H 1.08994 * 109.47149 * 59.99786 * 1 2 3 33 33 H 0.96992 * 119.99828 * 0.02562 * 6 4 2 34 34 H 1.09003 * 110.62969 * 0.02562 * 9 7 6 35 35 H 1.08999 * 110.62898 * 123.02656 * 9 7 6 36 36 H 1.09003 * 110.62664 * 190.31275 * 12 10 9 37 37 H 1.08994 * 110.63366 * 313.17483 * 12 10 9 38 38 H 1.08997 * 110.62748 * 241.50332 * 13 12 10 39 39 H 1.09003 * 110.62434 * 118.48466 * 13 12 10 40 40 H 0.97002 * 119.99899 * 179.97438 * 20 19 17 41 41 H 1.08001 * 125.96021 * 359.97438 * 26 25 2 42 42 H 1.07998 * 125.53197 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7021 -0.2532 -2.4546 7 6 2.1900 -0.9442 -3.6507 8 1 2.2865 -2.0134 -3.4626 9 6 3.5402 -0.3443 -4.1146 10 6 3.2248 0.1977 -5.5415 11 1 3.9020 0.9604 -5.9257 12 6 3.0675 -1.0719 -6.4313 13 6 1.7173 -1.6718 -5.9674 14 6 1.2431 -0.6832 -4.8599 15 1 0.1770 -0.6925 -4.6328 16 7 1.7911 0.6155 -5.3793 17 6 1.1737 1.8121 -5.6290 18 1 1.7632 2.6826 -5.8765 19 6 -0.2097 1.9062 -5.5640 20 7 -0.7813 3.0755 -5.3689 21 14 -1.2600 0.3730 -5.7535 22 1 -1.5506 -0.1966 -4.4132 23 1 -2.5348 0.7267 -6.4281 24 1 -0.5296 -0.6296 -6.5697 25 7 2.0184 -0.6907 1.1962 26 6 1.4559 -1.7519 1.7999 27 7 2.1939 -2.0701 2.8322 28 6 3.2310 -1.2383 2.9199 29 7 3.1700 -0.3787 1.9370 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.1415 0.5333 -2.5435 34 1 3.8470 0.4670 -3.4545 35 1 4.3085 -1.1162 -4.1583 36 1 3.0242 -0.7989 -7.4857 37 1 3.8836 -1.7714 -6.2502 38 1 1.8624 -2.6699 -5.5542 39 1 1.0046 -1.6962 -6.7917 40 1 -1.7481 3.1413 -5.3239 41 1 0.5524 -2.2542 1.4872 42 1 4.0001 -1.2718 3.6774 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096976327.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:32:06 Heat of formation + Delta-G solvation = 117.528144 kcal Electronic energy + Delta-G solvation = -25986.019831 eV Core-core repulsion = 22391.175062 eV Total energy + Delta-G solvation = -3594.844769 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.15251 -40.25227 -38.90746 -35.06079 -34.10371 -32.72021 -31.39750 -30.27900 -29.80146 -29.32262 -28.24092 -25.34214 -24.14477 -22.76565 -21.92236 -21.30043 -20.40908 -20.00509 -19.08064 -17.84557 -17.21609 -17.09742 -16.30760 -15.54016 -15.48037 -15.04310 -14.59589 -14.35411 -14.22972 -13.90035 -13.58057 -13.43042 -12.84667 -12.78848 -12.73074 -12.45600 -12.40113 -11.77890 -11.57099 -11.53954 -11.25779 -11.15855 -10.99709 -10.49873 -10.44547 -10.34274 -10.06873 -9.94032 -9.79481 -9.78305 -9.42067 -9.35287 -9.06674 -8.76041 -7.40812 -6.07360 -3.33344 1.55986 2.08704 2.56065 2.95609 3.11680 3.30455 3.33221 3.36535 4.23146 4.26599 4.36510 4.49824 4.54190 4.66431 4.77191 4.99132 5.12475 5.20259 5.22690 5.28211 5.35432 5.49730 5.57889 5.67582 5.68763 5.77211 5.80801 5.93427 6.07016 6.11673 6.15801 6.32542 6.37275 6.40014 6.53898 6.61425 6.68191 6.75223 6.86301 7.21154 7.65868 8.03872 8.15987 8.25170 8.57178 9.48931 10.08747 11.08632 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.018341 B = 0.004602 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.272058 B = 6082.960934 C = 6810.798275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.137 3.863 3 H 0.133 0.867 4 C 0.501 3.499 5 O -0.535 6.535 6 N -0.699 5.699 7 C 0.132 3.868 8 H 0.087 0.913 9 C -0.137 4.137 10 C 0.141 3.859 11 H 0.097 0.903 12 C -0.134 4.134 13 C -0.134 4.134 14 C 0.116 3.884 15 H 0.096 0.904 16 N -0.606 5.606 17 C -0.225 4.225 18 H 0.099 0.901 19 C 0.016 3.984 20 N -0.910 5.910 21 Si 0.866 3.134 22 H -0.291 1.291 23 H -0.303 1.303 24 H -0.260 1.260 25 N -0.357 5.357 26 C 0.268 3.732 27 N -0.549 5.549 28 C 0.195 3.805 29 N -0.313 5.313 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.410 0.590 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.263 0.737 41 H 0.214 0.786 42 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.066 -7.736 8.707 12.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.030 3.970 3 H 0.151 0.849 4 C 0.284 3.716 5 O -0.412 6.412 6 N -0.349 5.349 7 C 0.026 3.974 8 H 0.105 0.895 9 C -0.177 4.177 10 C 0.034 3.966 11 H 0.115 0.885 12 C -0.173 4.173 13 C -0.174 4.174 14 C 0.008 3.992 15 H 0.113 0.887 16 N -0.328 5.328 17 C -0.351 4.351 18 H 0.117 0.883 19 C -0.181 4.181 20 N -0.554 5.554 21 Si 0.698 3.302 22 H -0.220 1.220 23 H -0.232 1.232 24 H -0.186 1.186 25 N -0.147 5.147 26 C -0.029 4.029 27 N -0.277 5.277 28 C -0.108 4.108 29 N -0.140 5.140 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.246 0.754 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.073 0.927 41 H 0.230 0.770 42 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 3.767 -7.783 8.764 12.312 hybrid contribution -1.205 -0.450 -0.457 1.365 sum 2.561 -8.233 8.307 11.973 Atomic orbital electron populations 1.22207 0.89996 1.04455 1.05528 1.21278 0.96467 0.98220 0.81066 0.84948 1.20469 0.81174 0.85129 0.84803 1.90736 1.37726 1.26190 1.86534 1.45976 1.52212 1.32128 1.04627 1.22572 0.95185 0.95751 0.83938 0.89503 1.23348 0.95803 0.99913 0.98619 1.22969 0.87371 0.93612 0.92686 0.88467 1.22999 0.96274 0.97931 1.00088 1.23052 0.97837 0.97393 0.99103 1.23366 0.96245 0.87775 0.91784 0.88698 1.46933 1.03677 1.08008 1.74200 1.18684 0.90102 0.84228 1.42114 0.88340 1.24710 0.96012 0.96007 1.01392 1.69824 1.10181 1.23181 1.52263 0.87207 0.80347 0.84691 0.77925 1.21972 1.23172 1.18571 1.50062 1.18630 1.24417 1.21580 1.25851 0.99203 0.87915 0.89900 1.70544 1.07345 1.28775 1.21007 1.25948 0.97333 0.90353 0.97150 1.78049 1.02637 1.25370 1.07935 0.90803 0.89944 0.88373 0.75378 0.91572 0.91708 0.92060 0.92302 0.92246 0.91204 0.92718 0.77013 0.76783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 8.75 37.16 0.33 -1.16 16 2 C 0.14 1.67 3.77 -69.08 -0.26 1.41 16 3 H 0.13 1.52 8.14 -51.93 -0.42 1.10 16 4 C 0.50 7.69 7.23 -10.98 -0.08 7.61 16 5 O -0.54 -10.06 16.07 5.55 0.09 -9.98 16 6 N -0.70 -11.01 4.96 -51.43 -0.26 -11.27 16 7 C 0.13 2.22 2.80 -65.47 -0.18 2.04 16 8 H 0.09 1.47 7.22 -51.93 -0.38 1.09 16 9 C -0.14 -2.23 6.23 -24.23 -0.15 -2.39 16 10 C 0.14 2.46 5.48 -62.82 -0.34 2.11 16 11 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 12 C -0.13 -2.10 6.44 -24.24 -0.16 -2.25 16 13 C -0.13 -2.26 6.21 -24.24 -0.15 -2.41 16 14 C 0.12 2.18 3.16 -62.84 -0.20 1.98 16 15 H 0.10 1.93 3.47 -51.93 -0.18 1.75 16 16 N -0.61 -12.73 2.84 -145.88 -0.41 -13.15 16 17 C -0.23 -5.68 10.94 -15.06 -0.16 -5.84 16 18 H 0.10 2.69 8.06 -52.48 -0.42 2.27 16 19 C 0.02 0.43 5.49 -17.43 -0.10 0.34 16 20 N -0.91 -25.73 13.97 55.49 0.78 -24.96 16 21 Si 0.87 20.02 24.62 -169.99 -4.19 15.83 16 22 H -0.29 -6.40 6.76 56.52 0.38 -6.02 16 23 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 24 H -0.26 -5.77 4.83 56.52 0.27 -5.49 16 25 N -0.36 -4.86 3.04 -57.24 -0.17 -5.04 16 26 C 0.27 3.36 11.77 -90.66 -1.07 2.29 16 27 N -0.55 -7.59 11.19 -15.83 -0.18 -7.77 16 28 C 0.20 2.55 13.03 -91.81 -1.20 1.36 16 29 N -0.31 -4.68 12.70 29.29 0.37 -4.31 16 30 H 0.07 0.60 7.22 -51.93 -0.38 0.23 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.10 0.91 7.55 -51.93 -0.39 0.52 16 33 H 0.41 6.51 8.06 -40.82 -0.33 6.18 16 34 H 0.07 1.14 7.98 -51.93 -0.41 0.72 16 35 H 0.06 0.97 7.82 -51.93 -0.41 0.57 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.06 0.79 7.82 -51.93 -0.41 0.39 16 38 H 0.06 0.87 7.82 -51.93 -0.41 0.46 16 39 H 0.07 1.25 6.58 -51.93 -0.34 0.91 16 40 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.21 1.85 7.32 -52.49 -0.38 1.47 16 42 H 0.22 1.93 8.06 -52.49 -0.42 1.50 16 LS Contribution 335.23 15.07 5.05 5.05 Total: -1.00 -32.63 335.23 -8.47 -41.10 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -5.83 Total: 9.40 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: -3.72 Total: 5.08 kcal Atomic # 7 Polarization: -66.62 SS G_CDS: 0.13 Total: -66.49 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.09 Total: -9.98 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.19 Total: 15.83 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.63 -8.47 -41.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096976327.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.633 kcal (2) G-P(sol) polarization free energy of solvation -32.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds