Wall clock time and date at job start Tue Mar 31 2020 09:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47647 * 2 1 4 4 C 1.50705 * 109.46995 * 240.00044 * 2 1 3 5 5 O 1.21285 * 119.99907 * 240.00024 * 4 2 1 6 6 N 1.34776 * 119.99857 * 59.72497 * 4 2 1 7 7 C 1.46500 * 119.99491 * 180.02562 * 6 4 2 8 8 H 1.08993 * 110.56444 * 32.10337 * 7 6 4 9 9 C 1.54852 * 110.62507 * 269.02343 * 7 6 4 10 10 C 1.55855 * 103.44688 * 241.51574 * 9 7 6 11 11 H 1.08993 * 116.12710 * 159.14753 * 10 9 7 12 12 C 1.55840 * 105.05938 * 288.17533 * 10 9 7 13 13 C 1.54852 * 103.44644 * 71.82436 * 12 10 9 14 14 C 1.55843 * 103.44452 * 359.97438 * 13 12 10 15 15 H 1.09002 * 116.12318 * 159.14871 * 14 13 12 16 16 N 1.50229 * 101.05034 * 32.93859 * 14 13 12 17 17 C 1.36941 * 130.83873 * 126.01331 * 16 14 13 18 18 H 1.08006 * 119.99745 * 171.59967 * 17 16 14 19 19 C 1.38813 * 120.00130 * 351.59705 * 17 16 14 20 20 N 1.31616 * 120.00074 * 157.94692 * 19 17 16 21 21 Si 1.86799 * 119.99680 * 337.94302 * 19 17 16 22 22 H 1.48504 * 109.47047 * 93.13665 * 21 19 17 23 23 H 1.48503 * 109.47001 * 213.13203 * 21 19 17 24 24 H 1.48494 * 109.47535 * 333.13676 * 21 19 17 25 25 N 1.46506 * 109.47152 * 120.00286 * 2 1 3 26 26 C 1.34425 * 126.82493 * 34.99787 * 25 2 1 27 27 N 1.30829 * 108.07825 * 179.97438 * 26 25 2 28 28 C 1.33234 * 109.83032 * 0.02562 * 27 26 25 29 29 N 1.30719 * 108.94394 * 359.74874 * 28 27 26 30 30 H 1.08996 * 109.46922 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46873 * 300.00081 * 1 2 3 32 32 H 1.08994 * 109.47149 * 59.99786 * 1 2 3 33 33 H 0.96992 * 119.99828 * 0.02562 * 6 4 2 34 34 H 1.09003 * 110.62969 * 0.02562 * 9 7 6 35 35 H 1.08999 * 110.62898 * 123.02656 * 9 7 6 36 36 H 1.09003 * 110.62664 * 190.31275 * 12 10 9 37 37 H 1.08994 * 110.63366 * 313.17483 * 12 10 9 38 38 H 1.08997 * 110.62748 * 241.50332 * 13 12 10 39 39 H 1.09003 * 110.62434 * 118.48466 * 13 12 10 40 40 H 0.97002 * 119.99899 * 179.97438 * 20 19 17 41 41 H 1.08001 * 125.96021 * 359.97438 * 26 25 2 42 42 H 1.07998 * 125.53197 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7021 -0.2532 -2.4546 7 6 2.1900 -0.9442 -3.6507 8 1 2.2865 -2.0134 -3.4626 9 6 3.5402 -0.3443 -4.1146 10 6 3.2248 0.1977 -5.5415 11 1 3.9020 0.9604 -5.9257 12 6 3.0675 -1.0719 -6.4313 13 6 1.7173 -1.6718 -5.9674 14 6 1.2431 -0.6832 -4.8599 15 1 0.1770 -0.6925 -4.6328 16 7 1.7911 0.6155 -5.3793 17 6 1.1737 1.8121 -5.6290 18 1 1.7632 2.6826 -5.8765 19 6 -0.2097 1.9062 -5.5640 20 7 -0.7813 3.0755 -5.3689 21 14 -1.2600 0.3730 -5.7535 22 1 -1.5506 -0.1966 -4.4132 23 1 -2.5348 0.7267 -6.4281 24 1 -0.5296 -0.6296 -6.5697 25 7 2.0184 -0.6907 1.1962 26 6 1.4559 -1.7519 1.7999 27 7 2.1939 -2.0701 2.8322 28 6 3.2310 -1.2383 2.9199 29 7 3.1700 -0.3787 1.9370 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.1415 0.5333 -2.5435 34 1 3.8470 0.4670 -3.4545 35 1 4.3085 -1.1162 -4.1583 36 1 3.0242 -0.7989 -7.4857 37 1 3.8836 -1.7714 -6.2502 38 1 1.8624 -2.6699 -5.5542 39 1 1.0046 -1.6962 -6.7917 40 1 -1.7481 3.1413 -5.3239 41 1 0.5524 -2.2542 1.4872 42 1 4.0001 -1.2718 3.6774 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096976327.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:32:05 Heat of formation + Delta-G solvation = 96.544877 kcal Electronic energy + Delta-G solvation = -25986.929734 eV Core-core repulsion = 22391.175062 eV Total energy + Delta-G solvation = -3595.754672 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.13578 -41.59343 -40.22051 -36.08062 -35.43615 -34.58908 -32.39040 -31.53540 -31.28692 -30.67767 -29.50364 -26.31491 -25.87877 -23.90358 -22.90474 -22.47677 -21.97433 -21.17702 -20.49038 -19.09732 -18.86221 -18.19088 -17.69281 -16.89754 -16.54729 -16.25296 -15.80758 -15.66414 -15.27885 -15.19853 -15.17032 -14.87300 -14.33649 -13.93416 -13.80929 -13.49986 -13.34007 -13.25226 -13.01111 -12.87302 -12.81083 -12.53914 -12.41715 -11.99396 -11.86869 -11.62561 -11.42518 -11.25051 -11.10815 -11.04586 -10.88703 -10.80820 -10.51251 -10.13576 -9.20973 -8.08528 -5.29840 0.57638 1.13918 1.27332 1.36629 1.46138 1.51669 1.98100 2.15582 2.45089 2.93846 3.19145 3.30997 3.43762 3.50268 3.73213 3.75306 3.82441 3.93369 4.02837 4.22821 4.25027 4.29048 4.45088 4.48881 4.51466 4.59282 4.60196 4.69543 4.76474 4.97830 5.04682 5.09178 5.19452 5.20786 5.30681 5.38790 5.45574 5.52938 5.59864 5.77381 6.16303 6.39767 6.64815 7.00512 7.06944 7.52420 8.24760 9.11161 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.018341 B = 0.004602 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.272058 B = 6082.960934 C = 6810.798275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.141 3.859 3 H 0.136 0.864 4 C 0.506 3.494 5 O -0.569 6.569 6 N -0.699 5.699 7 C 0.138 3.862 8 H 0.095 0.905 9 C -0.127 4.127 10 C 0.134 3.866 11 H 0.098 0.902 12 C -0.124 4.124 13 C -0.133 4.133 14 C 0.109 3.891 15 H 0.082 0.918 16 N -0.624 5.624 17 C -0.205 4.205 18 H 0.065 0.935 19 C -0.037 4.037 20 N -0.959 5.959 21 Si 0.923 3.077 22 H -0.273 1.273 23 H -0.324 1.324 24 H -0.245 1.245 25 N -0.365 5.365 26 C 0.269 3.731 27 N -0.571 5.571 28 C 0.195 3.805 29 N -0.351 5.351 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.409 0.591 34 H 0.052 0.948 35 H 0.086 0.914 36 H 0.058 0.942 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.058 0.942 40 H 0.259 0.741 41 H 0.246 0.754 42 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.408 -10.180 9.364 14.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.034 3.966 3 H 0.154 0.846 4 C 0.291 3.709 5 O -0.448 6.448 6 N -0.349 5.349 7 C 0.031 3.969 8 H 0.113 0.887 9 C -0.167 4.167 10 C 0.028 3.972 11 H 0.116 0.884 12 C -0.163 4.163 13 C -0.172 4.172 14 C 0.002 3.998 15 H 0.099 0.901 16 N -0.348 5.348 17 C -0.333 4.333 18 H 0.082 0.918 19 C -0.230 4.230 20 N -0.607 5.607 21 Si 0.754 3.246 22 H -0.201 1.201 23 H -0.255 1.255 24 H -0.169 1.169 25 N -0.155 5.155 26 C -0.027 4.027 27 N -0.298 5.298 28 C -0.107 4.107 29 N -0.178 5.178 30 H 0.106 0.894 31 H 0.118 0.882 32 H 0.114 0.886 33 H 0.245 0.755 34 H 0.071 0.929 35 H 0.104 0.896 36 H 0.077 0.923 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.262 0.738 42 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 4.150 -10.272 9.425 14.546 hybrid contribution -1.185 0.329 -0.641 1.387 sum 2.966 -9.943 8.785 13.595 Atomic orbital electron populations 1.22233 0.87418 1.05629 1.06291 1.21344 0.98285 0.97607 0.79332 0.84623 1.20911 0.80193 0.84530 0.85283 1.90716 1.39250 1.27820 1.87017 1.45992 1.52160 1.31967 1.04809 1.22478 0.94625 0.96256 0.83536 0.88709 1.23271 0.96148 0.99976 0.97325 1.23202 0.85397 0.94599 0.93978 0.88449 1.22946 0.96808 0.97210 0.99329 1.23063 0.97881 0.98336 0.97935 1.23496 0.95920 0.87016 0.93327 0.90054 1.46960 1.05447 1.07714 1.74664 1.18517 0.89912 0.85118 1.39797 0.91763 1.25215 0.97102 0.98304 1.02411 1.69956 1.10045 1.25504 1.55226 0.86288 0.77767 0.81860 0.78638 1.20096 1.25461 1.16915 1.50142 1.18575 1.24980 1.21812 1.26558 0.99698 0.87262 0.89189 1.70581 1.07985 1.29402 1.21876 1.26617 0.97583 0.89402 0.97114 1.77995 1.03917 1.26824 1.09071 0.89444 0.88175 0.88568 0.75500 0.92900 0.89554 0.92316 0.89086 0.89272 0.92372 0.93219 0.73808 0.73843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 8.75 71.98 0.63 -1.87 16 2 C 0.14 3.23 3.77 44.25 0.17 3.40 16 3 H 0.14 2.99 8.14 -2.39 -0.02 2.97 16 4 C 0.51 14.71 7.23 87.66 0.63 15.35 16 5 O -0.57 -20.42 16.07 -3.05 -0.05 -20.47 16 6 N -0.70 -20.97 4.96 -435.00 -2.16 -23.13 16 7 C 0.14 4.30 2.80 46.59 0.13 4.43 16 8 H 0.10 2.88 7.22 -2.39 -0.02 2.86 16 9 C -0.13 -3.86 6.23 32.21 0.20 -3.66 16 10 C 0.13 4.43 5.48 46.24 0.25 4.68 16 11 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 12 C -0.12 -3.47 6.44 32.21 0.21 -3.26 16 13 C -0.13 -4.01 6.21 32.21 0.20 -3.81 16 14 C 0.11 3.85 3.16 46.21 0.15 3.99 16 15 H 0.08 3.12 3.47 -2.39 -0.01 3.11 16 16 N -0.62 -25.69 2.84 -615.44 -1.75 -27.44 16 17 C -0.21 -10.54 10.94 84.03 0.92 -9.62 16 18 H 0.06 3.66 8.06 -2.91 -0.02 3.64 16 19 C -0.04 -1.95 5.49 84.86 0.47 -1.48 16 20 N -0.96 -55.96 13.97 21.65 0.30 -55.65 16 21 Si 0.92 41.47 24.62 68.60 1.69 43.16 16 22 H -0.27 -11.32 6.76 99.48 0.67 -10.65 16 23 H -0.32 -15.62 7.11 99.48 0.71 -14.92 16 24 H -0.24 -10.22 4.83 99.48 0.48 -9.74 16 25 N -0.37 -9.37 3.04 -335.00 -1.02 -10.39 16 26 C 0.27 6.16 11.77 180.36 2.12 8.28 16 27 N -0.57 -14.76 11.19 -204.01 -2.28 -17.04 16 28 C 0.20 4.83 13.03 180.77 2.36 7.18 16 29 N -0.35 -10.13 12.70 -61.25 -0.78 -10.91 16 30 H 0.09 1.15 7.22 -2.39 -0.02 1.14 16 31 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.10 1.61 7.55 -2.39 -0.02 1.59 16 33 H 0.41 12.61 8.06 -92.71 -0.75 11.87 16 34 H 0.05 1.75 7.98 -2.39 -0.02 1.73 16 35 H 0.09 2.28 7.82 -2.39 -0.02 2.26 16 36 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.09 2.01 7.82 -2.39 -0.02 1.99 16 38 H 0.09 2.18 7.82 -2.39 -0.02 2.16 16 39 H 0.06 1.90 6.58 -2.39 -0.02 1.89 16 40 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 41 H 0.25 3.51 7.32 -2.91 -0.02 3.49 16 42 H 0.25 3.95 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -71.56 335.23 2.43 -69.13 By element: Atomic # 1 Polarization: 29.10 SS G_CDS: 0.04 Total: 29.15 kcal Atomic # 6 Polarization: 15.18 SS G_CDS: 8.43 Total: 23.61 kcal Atomic # 7 Polarization: -136.88 SS G_CDS: -7.68 Total: -144.56 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.05 Total: -20.47 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 1.69 Total: 43.16 kcal Total: -71.56 2.43 -69.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096976327.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.671 kcal (2) G-P(sol) polarization free energy of solvation -71.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds