Wall clock time and date at job start Tue Mar 31 2020 09:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47478 * 2 1 4 4 C 1.50708 * 109.46839 * 119.99820 * 2 1 3 5 5 O 1.21276 * 119.99596 * 120.00013 * 4 2 1 6 6 N 1.34767 * 120.00103 * 299.99736 * 4 2 1 7 7 C 1.46505 * 120.00221 * 180.02562 * 6 4 2 8 8 H 1.08997 * 110.55527 * 32.09464 * 7 6 4 9 9 C 1.54859 * 110.62368 * 269.02589 * 7 6 4 10 10 C 1.56301 * 103.40235 * 241.38425 * 9 7 6 11 11 H 1.09004 * 115.71288 * 158.93868 * 10 9 7 12 12 C 1.55840 * 105.07992 * 288.42499 * 10 9 7 13 13 C 1.54218 * 103.56670 * 71.69451 * 12 10 9 14 14 C 1.55839 * 110.62803 * 155.00032 * 7 6 4 15 15 H 1.08999 * 115.56647 * 319.67695 * 14 7 6 16 16 N 1.50238 * 100.84350 * 33.12452 * 10 9 7 17 17 C 1.36936 * 130.83924 * 126.10578 * 16 10 9 18 18 H 1.07996 * 119.99564 * 189.78315 * 17 16 10 19 19 C 1.38810 * 120.00076 * 9.79154 * 17 16 10 20 20 N 1.31623 * 119.99729 * 9.04736 * 19 17 16 21 21 Si 1.86800 * 119.99931 * 189.05426 * 19 17 16 22 22 H 1.48501 * 109.46946 * 265.01199 * 21 19 17 23 23 H 1.48497 * 109.47221 * 25.01349 * 21 19 17 24 24 H 1.48501 * 109.47033 * 145.01350 * 21 19 17 25 25 N 1.46499 * 109.46971 * 239.99787 * 2 1 3 26 26 C 1.34427 * 126.82144 * 324.70681 * 25 2 1 27 27 N 1.30842 * 108.07518 * 179.89563 * 26 25 2 28 28 C 1.33236 * 109.82583 * 0.38493 * 27 26 25 29 29 N 1.30716 * 108.95063 * 359.76093 * 28 27 26 30 30 H 1.08998 * 109.47334 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46810 * 300.00036 * 1 2 3 32 32 H 1.09003 * 109.46763 * 60.00012 * 1 2 3 33 33 H 0.97008 * 120.00590 * 0.02562 * 6 4 2 34 34 H 1.09003 * 110.62553 * 359.97438 * 9 7 6 35 35 H 1.08996 * 110.62248 * 122.85908 * 9 7 6 36 36 H 1.09009 * 110.62674 * 190.09924 * 12 10 9 37 37 H 1.09006 * 110.63015 * 312.95537 * 12 10 9 38 38 H 1.09009 * 110.64223 * 241.43745 * 13 12 10 39 39 H 1.08996 * 110.50090 * 118.49524 * 13 12 10 40 40 H 0.96999 * 119.99570 * 180.02562 * 20 19 17 41 41 H 1.08002 * 125.96474 * 0.04166 * 26 25 2 42 42 H 1.08001 * 125.52340 * 179.72535 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.7295 -1.6965 1.1193 6 7 1.7068 -0.2499 2.4546 7 6 2.1955 -0.9402 3.6508 8 1 3.1735 -1.3836 3.4641 9 6 1.1829 -2.0178 4.1107 10 6 0.7740 -1.5431 5.5427 11 1 -0.1727 -1.9323 5.9175 12 6 2.0259 -1.8104 6.4314 13 6 3.0330 -0.7376 5.9698 14 6 2.2585 0.0383 4.8621 15 1 2.6192 1.0421 4.6377 16 7 0.8504 -0.0517 5.3785 17 6 -0.0759 0.9254 5.6284 18 1 0.1054 1.9380 5.2998 19 6 -1.2478 0.6142 6.3043 20 7 -1.3923 -0.5702 6.8600 21 14 -2.6196 1.8763 6.4249 22 1 -2.4971 2.6198 7.7045 23 1 -2.5191 2.8269 5.2885 24 1 -3.9333 1.1855 6.3777 25 7 2.0183 -0.6907 -1.1961 26 6 1.4588 -1.7553 -1.7966 27 7 2.1941 -2.0704 -2.8319 28 6 3.2313 -1.2388 -2.9195 29 7 3.1675 -0.3759 -1.9397 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.1488 0.5386 2.5436 34 1 0.3170 -2.0383 3.4490 35 1 1.6575 -2.9982 4.1512 36 1 1.7836 -1.6779 7.4859 37 1 2.4178 -2.8116 6.2516 38 1 3.9285 -1.2030 5.5578 39 1 3.2892 -0.0740 6.7956 40 1 -2.2113 -0.7877 7.3319 41 1 0.5580 -2.2607 -1.4810 42 1 4.0006 -1.2725 -3.6768 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096976329.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:32:09 Heat of formation + Delta-G solvation = 105.739984 kcal Electronic energy + Delta-G solvation = -25705.584227 eV Core-core repulsion = 22110.228285 eV Total energy + Delta-G solvation = -3595.355942 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.15738 -40.03043 -38.64129 -35.05837 -34.04642 -32.62320 -31.39984 -30.23275 -29.22206 -28.90398 -27.77232 -25.31489 -24.28871 -22.65515 -21.93098 -21.13652 -20.03867 -19.83381 -18.84756 -17.60669 -17.15024 -17.05547 -15.90194 -15.37406 -15.20951 -14.91000 -14.80437 -14.29044 -14.12033 -13.95003 -13.56793 -13.08218 -12.80617 -12.73968 -12.46625 -12.16540 -11.95884 -11.67040 -11.36216 -11.23822 -11.05332 -10.95220 -10.62931 -10.44683 -10.36541 -10.17559 -10.07958 -10.05749 -9.79102 -9.69094 -9.41408 -9.17203 -8.94707 -8.70704 -7.02957 -5.88434 -3.24835 1.54856 2.08315 2.59458 2.94838 3.28172 3.33354 3.34137 3.36347 4.22420 4.27062 4.31562 4.52134 4.64953 4.77319 5.01123 5.12475 5.21903 5.23725 5.33340 5.54075 5.56572 5.67511 5.79689 5.95956 5.96881 6.05814 6.14879 6.15568 6.32300 6.35999 6.38821 6.51303 6.63229 6.67731 6.71423 6.85646 6.96576 7.21226 7.38384 7.66067 7.70469 8.00691 8.03083 8.29711 8.93772 9.58853 10.41987 11.23520 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.018635 B = 0.004038 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.158477 B = 6933.080381 C = 7846.131597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.137 3.863 3 H 0.129 0.871 4 C 0.499 3.501 5 O -0.534 6.534 6 N -0.697 5.697 7 C 0.130 3.870 8 H 0.081 0.919 9 C -0.145 4.145 10 C 0.161 3.839 11 H 0.141 0.859 12 C -0.134 4.134 13 C -0.128 4.128 14 C 0.124 3.876 15 H 0.089 0.911 16 N -0.589 5.589 17 C -0.221 4.221 18 H 0.077 0.923 19 C -0.006 4.006 20 N -0.913 5.913 21 Si 0.911 3.089 22 H -0.290 1.290 23 H -0.281 1.281 24 H -0.290 1.290 25 N -0.358 5.358 26 C 0.270 3.730 27 N -0.549 5.549 28 C 0.196 3.804 29 N -0.316 5.316 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.404 0.596 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.047 0.953 38 H 0.050 0.950 39 H 0.058 0.942 40 H 0.254 0.746 41 H 0.214 0.786 42 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.880 0.630 -11.645 12.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.030 3.970 3 H 0.147 0.853 4 C 0.281 3.719 5 O -0.411 6.411 6 N -0.347 5.347 7 C 0.024 3.976 8 H 0.099 0.901 9 C -0.186 4.186 10 C 0.055 3.945 11 H 0.158 0.842 12 C -0.173 4.173 13 C -0.168 4.168 14 C 0.016 3.984 15 H 0.107 0.893 16 N -0.310 5.310 17 C -0.349 4.349 18 H 0.095 0.905 19 C -0.202 4.202 20 N -0.560 5.560 21 Si 0.742 3.258 22 H -0.217 1.217 23 H -0.207 1.207 24 H -0.216 1.216 25 N -0.148 5.148 26 C -0.027 4.027 27 N -0.277 5.277 28 C -0.107 4.107 29 N -0.143 5.143 30 H 0.093 0.907 31 H 0.117 0.883 32 H 0.098 0.902 33 H 0.240 0.760 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.230 0.770 42 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 4.521 0.393 -11.630 12.484 hybrid contribution -1.040 0.940 0.448 1.472 sum 3.481 1.334 -11.182 11.787 Atomic orbital electron populations 1.22196 0.89927 1.04690 1.05252 1.21281 0.96503 0.97964 0.81253 0.85318 1.20455 0.81314 0.85282 0.84813 1.90744 1.37804 1.26052 1.86463 1.45968 1.52125 1.31788 1.04796 1.22715 0.96945 0.94331 0.83626 0.90098 1.23548 0.97874 0.96390 1.00748 1.23501 0.97610 0.83714 0.89724 0.84217 1.22884 0.97371 0.96124 1.00948 1.22758 0.96997 0.98316 0.98718 1.23178 0.88092 0.95539 0.91622 0.89348 1.46567 1.07626 1.02324 1.74507 1.18956 0.96065 0.89490 1.30395 0.90491 1.24764 0.99057 0.97267 0.99160 1.69679 1.26802 1.20621 1.38863 0.86122 0.81723 0.80184 0.77784 1.21679 1.20667 1.21643 1.50061 1.18874 1.24240 1.21589 1.25876 0.99195 0.87839 0.89743 1.70558 1.07349 1.28859 1.20895 1.25941 0.97293 0.90328 0.97161 1.78021 1.02768 1.25426 1.08055 0.90676 0.88341 0.90193 0.76033 0.92308 0.92621 0.92247 0.93446 0.93087 0.92339 0.93516 0.76956 0.76807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 8.75 37.16 0.33 -1.02 16 2 C 0.14 1.55 3.77 -69.08 -0.26 1.29 16 3 H 0.13 1.27 8.14 -51.93 -0.42 0.84 16 4 C 0.50 7.38 7.22 -10.99 -0.08 7.30 16 5 O -0.53 -10.12 16.06 5.56 0.09 -10.03 16 6 N -0.70 -10.27 4.97 -51.39 -0.26 -10.52 16 7 C 0.13 2.21 2.80 -65.43 -0.18 2.03 16 8 H 0.08 1.44 7.23 -51.93 -0.38 1.07 16 9 C -0.15 -2.69 6.24 -23.98 -0.15 -2.84 16 10 C 0.16 3.44 4.65 -62.55 -0.29 3.15 16 11 H 0.14 3.44 5.89 -51.93 -0.31 3.14 16 12 C -0.13 -2.57 6.41 -24.58 -0.16 -2.73 16 13 C -0.13 -2.25 6.41 -24.58 -0.16 -2.41 16 14 C 0.12 2.26 5.06 -62.80 -0.32 1.94 16 15 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 16 N -0.59 -12.99 2.97 -145.55 -0.43 -13.43 16 17 C -0.22 -5.41 10.55 -15.06 -0.16 -5.57 16 18 H 0.08 1.81 7.84 -52.49 -0.41 1.40 16 19 C -0.01 -0.14 5.47 -17.43 -0.10 -0.24 16 20 N -0.91 -24.50 10.75 55.49 0.60 -23.90 16 21 Si 0.91 20.23 29.56 -169.99 -5.03 15.20 16 22 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 25 N -0.36 -4.71 3.04 -57.24 -0.17 -4.88 16 26 C 0.27 3.36 11.76 -90.65 -1.07 2.29 16 27 N -0.55 -7.53 11.19 -15.83 -0.18 -7.71 16 28 C 0.20 2.50 13.03 -91.81 -1.20 1.31 16 29 N -0.32 -4.56 12.70 29.29 0.37 -4.18 16 30 H 0.07 0.61 7.23 -51.93 -0.38 0.24 16 31 H 0.10 0.79 7.56 -51.93 -0.39 0.40 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.40 5.47 8.08 -40.82 -0.33 5.14 16 34 H 0.06 1.13 7.98 -51.93 -0.41 0.71 16 35 H 0.06 0.99 7.84 -51.93 -0.41 0.58 16 36 H 0.06 1.24 8.14 -51.92 -0.42 0.81 16 37 H 0.05 0.82 7.84 -51.93 -0.41 0.41 16 38 H 0.05 0.80 7.82 -51.92 -0.41 0.39 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.25 6.70 8.31 -40.82 -0.34 6.36 16 41 H 0.21 1.89 7.33 -52.49 -0.38 1.51 16 42 H 0.22 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 344.40 15.07 5.19 5.19 Total: -1.00 -31.96 344.40 -9.49 -41.45 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -5.88 Total: 8.32 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: -3.79 Total: 4.49 kcal Atomic # 7 Polarization: -64.55 SS G_CDS: -0.07 Total: -64.62 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.09 Total: -10.03 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.03 Total: 15.20 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.96 -9.49 -41.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096976329.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.186 kcal (2) G-P(sol) polarization free energy of solvation -31.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds