Wall clock time and date at job start Tue Mar 31 2020 09:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47478 * 2 1 4 4 C 1.50708 * 109.46839 * 119.99820 * 2 1 3 5 5 O 1.21276 * 119.99596 * 120.00013 * 4 2 1 6 6 N 1.34767 * 120.00103 * 299.99736 * 4 2 1 7 7 C 1.46505 * 120.00221 * 180.02562 * 6 4 2 8 8 H 1.08997 * 110.55527 * 32.09464 * 7 6 4 9 9 C 1.54859 * 110.62368 * 269.02589 * 7 6 4 10 10 C 1.56301 * 103.40235 * 241.38425 * 9 7 6 11 11 H 1.09004 * 115.71288 * 158.93868 * 10 9 7 12 12 C 1.55840 * 105.07992 * 288.42499 * 10 9 7 13 13 C 1.54218 * 103.56670 * 71.69451 * 12 10 9 14 14 C 1.55839 * 110.62803 * 155.00032 * 7 6 4 15 15 H 1.08999 * 115.56647 * 319.67695 * 14 7 6 16 16 N 1.50238 * 100.84350 * 33.12452 * 10 9 7 17 17 C 1.36936 * 130.83924 * 126.10578 * 16 10 9 18 18 H 1.07996 * 119.99564 * 189.78315 * 17 16 10 19 19 C 1.38810 * 120.00076 * 9.79154 * 17 16 10 20 20 N 1.31623 * 119.99729 * 9.04736 * 19 17 16 21 21 Si 1.86800 * 119.99931 * 189.05426 * 19 17 16 22 22 H 1.48501 * 109.46946 * 265.01199 * 21 19 17 23 23 H 1.48497 * 109.47221 * 25.01349 * 21 19 17 24 24 H 1.48501 * 109.47033 * 145.01350 * 21 19 17 25 25 N 1.46499 * 109.46971 * 239.99787 * 2 1 3 26 26 C 1.34427 * 126.82144 * 324.70681 * 25 2 1 27 27 N 1.30842 * 108.07518 * 179.89563 * 26 25 2 28 28 C 1.33236 * 109.82583 * 0.38493 * 27 26 25 29 29 N 1.30716 * 108.95063 * 359.76093 * 28 27 26 30 30 H 1.08998 * 109.47334 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46810 * 300.00036 * 1 2 3 32 32 H 1.09003 * 109.46763 * 60.00012 * 1 2 3 33 33 H 0.97008 * 120.00590 * 0.02562 * 6 4 2 34 34 H 1.09003 * 110.62553 * 359.97438 * 9 7 6 35 35 H 1.08996 * 110.62248 * 122.85908 * 9 7 6 36 36 H 1.09009 * 110.62674 * 190.09924 * 12 10 9 37 37 H 1.09006 * 110.63015 * 312.95537 * 12 10 9 38 38 H 1.09009 * 110.64223 * 241.43745 * 13 12 10 39 39 H 1.08996 * 110.50090 * 118.49524 * 13 12 10 40 40 H 0.96999 * 119.99570 * 180.02562 * 20 19 17 41 41 H 1.08002 * 125.96474 * 0.04166 * 26 25 2 42 42 H 1.08001 * 125.52340 * 179.72535 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.7295 -1.6965 1.1193 6 7 1.7068 -0.2499 2.4546 7 6 2.1955 -0.9402 3.6508 8 1 3.1735 -1.3836 3.4641 9 6 1.1829 -2.0178 4.1107 10 6 0.7740 -1.5431 5.5427 11 1 -0.1727 -1.9323 5.9175 12 6 2.0259 -1.8104 6.4314 13 6 3.0330 -0.7376 5.9698 14 6 2.2585 0.0383 4.8621 15 1 2.6192 1.0421 4.6377 16 7 0.8504 -0.0517 5.3785 17 6 -0.0759 0.9254 5.6284 18 1 0.1054 1.9380 5.2998 19 6 -1.2478 0.6142 6.3043 20 7 -1.3923 -0.5702 6.8600 21 14 -2.6196 1.8763 6.4249 22 1 -2.4971 2.6198 7.7045 23 1 -2.5191 2.8269 5.2885 24 1 -3.9333 1.1855 6.3777 25 7 2.0183 -0.6907 -1.1961 26 6 1.4588 -1.7553 -1.7966 27 7 2.1941 -2.0704 -2.8319 28 6 3.2313 -1.2388 -2.9195 29 7 3.1675 -0.3759 -1.9397 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.1488 0.5386 2.5436 34 1 0.3170 -2.0383 3.4490 35 1 1.6575 -2.9982 4.1512 36 1 1.7836 -1.6779 7.4859 37 1 2.4178 -2.8116 6.2516 38 1 3.9285 -1.2030 5.5578 39 1 3.2892 -0.0740 6.7956 40 1 -2.2113 -0.7877 7.3319 41 1 0.5580 -2.2607 -1.4810 42 1 4.0006 -1.2725 -3.6768 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096976329.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:32:08 Heat of formation + Delta-G solvation = 86.996476 kcal Electronic energy + Delta-G solvation = -25706.397007 eV Core-core repulsion = 22110.228285 eV Total energy + Delta-G solvation = -3596.168722 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.10867 -41.37757 -40.03205 -36.03717 -35.40357 -34.39745 -32.36360 -31.22613 -30.97177 -30.34210 -29.18190 -26.32204 -25.96070 -23.80854 -22.88730 -22.37940 -21.57264 -21.10078 -20.34661 -18.84493 -18.68433 -18.16268 -17.10704 -16.73974 -16.42286 -16.27513 -15.91864 -15.77733 -15.31943 -15.14404 -14.89589 -14.49354 -13.84133 -13.73041 -13.62702 -13.42539 -13.30916 -12.90796 -12.85623 -12.79957 -12.66002 -12.50307 -12.10820 -11.92402 -11.91136 -11.74387 -11.51751 -11.22844 -11.05882 -10.91176 -10.77909 -10.75189 -10.44185 -10.05372 -8.83240 -7.77979 -5.14235 0.58726 1.18497 1.44724 1.52051 1.53732 1.61399 1.99750 2.21825 2.52927 3.35541 3.38936 3.44576 3.45763 3.58270 3.77584 3.95215 4.00255 4.06930 4.26121 4.27256 4.43971 4.47948 4.56453 4.60656 4.64680 4.67473 4.81303 4.89417 5.03653 5.07862 5.15339 5.18539 5.23943 5.36776 5.47272 5.51474 5.58478 5.68194 5.79369 5.89565 6.22148 6.51368 7.04851 7.07880 7.13167 7.73639 8.61111 9.33073 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.018635 B = 0.004038 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.158477 B = 6933.080381 C = 7846.131597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.144 3.856 3 H 0.146 0.854 4 C 0.502 3.498 5 O -0.576 6.576 6 N -0.691 5.691 7 C 0.143 3.857 8 H 0.081 0.919 9 C -0.133 4.133 10 C 0.149 3.851 11 H 0.104 0.896 12 C -0.129 4.129 13 C -0.122 4.122 14 C 0.127 3.873 15 H 0.104 0.896 16 N -0.607 5.607 17 C -0.216 4.216 18 H 0.088 0.912 19 C -0.062 4.062 20 N -0.945 5.945 21 Si 0.969 3.031 22 H -0.298 1.298 23 H -0.263 1.263 24 H -0.302 1.302 25 N -0.365 5.365 26 C 0.268 3.732 27 N -0.573 5.573 28 C 0.194 3.806 29 N -0.348 5.348 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.412 0.588 34 H 0.048 0.952 35 H 0.063 0.937 36 H 0.033 0.967 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.055 0.945 40 H 0.245 0.755 41 H 0.242 0.758 42 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.450 1.677 -13.219 14.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.037 3.963 3 H 0.164 0.836 4 C 0.287 3.713 5 O -0.456 6.456 6 N -0.341 5.341 7 C 0.036 3.964 8 H 0.099 0.901 9 C -0.173 4.173 10 C 0.042 3.958 11 H 0.121 0.879 12 C -0.169 4.169 13 C -0.162 4.162 14 C 0.020 3.980 15 H 0.122 0.878 16 N -0.328 5.328 17 C -0.345 4.345 18 H 0.105 0.895 19 C -0.256 4.256 20 N -0.594 5.594 21 Si 0.799 3.201 22 H -0.226 1.226 23 H -0.187 1.187 24 H -0.229 1.229 25 N -0.155 5.155 26 C -0.028 4.028 27 N -0.300 5.300 28 C -0.109 4.109 29 N -0.175 5.175 30 H 0.095 0.905 31 H 0.122 0.878 32 H 0.118 0.882 33 H 0.249 0.751 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.052 0.948 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.074 0.926 40 H 0.054 0.946 41 H 0.258 0.742 42 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 5.109 1.477 -13.227 14.256 hybrid contribution -1.156 0.573 0.926 1.588 sum 3.952 2.050 -12.301 13.082 Atomic orbital electron populations 1.22226 0.87471 1.05265 1.06484 1.21395 0.98153 0.97807 0.78958 0.83650 1.21021 0.80181 0.84612 0.85525 1.90728 1.39708 1.28058 1.87084 1.45852 1.52062 1.31791 1.04373 1.22408 0.96385 0.93544 0.84033 0.90102 1.23383 0.97948 0.97327 0.98670 1.23348 0.96985 0.83786 0.91633 0.87889 1.22801 0.97088 0.97972 0.98991 1.22727 0.97343 0.97677 0.98444 1.23349 0.86045 0.96722 0.91886 0.87787 1.46729 1.09141 1.02271 1.74660 1.19329 0.96215 0.90318 1.28599 0.89470 1.25446 1.01287 0.98755 1.00065 1.69895 1.26717 1.22339 1.40433 0.85199 0.78823 0.78381 0.77696 1.22615 1.18732 1.22892 1.50183 1.18742 1.24661 1.21884 1.26493 0.99681 0.87446 0.89226 1.70584 1.08064 1.29566 1.21813 1.26608 0.97527 0.89460 0.97256 1.77960 1.03852 1.26663 1.08996 0.90481 0.87796 0.88202 0.75090 0.93298 0.91818 0.94802 0.91414 0.90388 0.92647 0.94595 0.74235 0.73885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 8.75 71.98 0.63 -1.52 16 2 C 0.14 2.89 3.77 44.25 0.17 3.06 16 3 H 0.15 2.45 8.14 -2.39 -0.02 2.43 16 4 C 0.50 13.87 7.22 87.66 0.63 14.50 16 5 O -0.58 -21.03 16.06 -3.02 -0.05 -21.08 16 6 N -0.69 -18.88 4.97 -434.91 -2.16 -21.04 16 7 C 0.14 4.60 2.80 46.61 0.13 4.73 16 8 H 0.08 2.68 7.23 -2.39 -0.02 2.67 16 9 C -0.13 -4.81 6.24 32.38 0.20 -4.61 16 10 C 0.15 6.38 4.65 46.39 0.22 6.60 16 11 H 0.10 5.27 5.89 -2.38 -0.01 5.25 16 12 C -0.13 -4.90 6.41 31.99 0.21 -4.69 16 13 C -0.12 -4.06 6.41 31.99 0.21 -3.86 16 14 C 0.13 4.37 5.06 46.23 0.23 4.60 16 15 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 16 N -0.61 -26.29 2.97 -614.39 -1.83 -28.12 16 17 C -0.22 -10.39 10.55 84.03 0.89 -9.51 16 18 H 0.09 3.93 7.84 -2.91 -0.02 3.91 16 19 C -0.06 -3.18 5.47 84.86 0.46 -2.71 16 20 N -0.94 -52.13 10.75 21.65 0.23 -51.89 16 21 Si 0.97 41.69 29.56 68.60 2.03 43.72 16 22 H -0.30 -13.13 7.11 99.48 0.71 -12.42 16 23 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 24 H -0.30 -13.42 7.11 99.48 0.71 -12.72 16 25 N -0.36 -8.89 3.04 -335.00 -1.02 -9.91 16 26 C 0.27 6.15 11.76 180.36 2.12 8.27 16 27 N -0.57 -14.80 11.19 -204.00 -2.28 -17.08 16 28 C 0.19 4.66 13.03 180.77 2.36 7.02 16 29 N -0.35 -9.50 12.70 -61.25 -0.78 -10.28 16 30 H 0.08 1.05 7.23 -2.39 -0.02 1.03 16 31 H 0.10 1.36 7.56 -2.39 -0.02 1.34 16 32 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.41 10.13 8.08 -92.70 -0.75 9.38 16 34 H 0.05 1.84 7.98 -2.39 -0.02 1.82 16 35 H 0.06 2.18 7.84 -2.39 -0.02 2.16 16 36 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 37 H 0.07 2.25 7.84 -2.38 -0.02 2.23 16 38 H 0.08 2.20 7.82 -2.38 -0.02 2.18 16 39 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.24 13.38 8.31 -92.71 -0.77 12.61 16 41 H 0.24 3.72 7.33 -2.91 -0.02 3.69 16 42 H 0.25 3.78 8.06 -2.91 -0.02 3.76 16 Total: -1.00 -69.52 344.40 2.89 -66.62 By element: Atomic # 1 Polarization: 26.87 SS G_CDS: 0.29 Total: 27.17 kcal Atomic # 6 Polarization: 13.43 SS G_CDS: 8.45 Total: 21.88 kcal Atomic # 7 Polarization: -130.48 SS G_CDS: -7.83 Total: -138.32 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.05 Total: -21.08 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -69.52 2.89 -66.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096976329.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.620 kcal (2) G-P(sol) polarization free energy of solvation -69.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds