Wall clock time and date at job start Tue Mar 31 2020 09:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.46654 * 2 1 4 4 N 1.28717 * 126.03500 * 272.40364 * 3 2 1 5 5 N 1.28515 * 110.64055 * 180.02562 * 4 3 2 6 6 C 1.33319 * 109.43795 * 359.72712 * 5 4 3 7 7 C 1.37005 * 106.37072 * 0.42815 * 6 5 4 8 8 C 1.47235 * 127.18815 * 179.84995 * 7 6 5 9 9 O 1.21622 * 120.00127 * 185.13930 * 8 7 6 10 10 N 1.34771 * 120.00252 * 5.13897 * 8 7 6 11 11 C 1.46507 * 120.00440 * 174.62622 * 10 8 7 12 12 H 1.09000 * 110.55492 * 32.09971 * 11 10 8 13 13 C 1.54841 * 110.62673 * 269.02793 * 11 10 8 14 14 C 1.57785 * 103.27332 * 240.99027 * 13 11 10 15 15 H 1.09004 * 115.64739 * 158.99027 * 14 13 11 16 16 C 1.55850 * 105.79875 * 289.04207 * 14 13 11 17 17 C 1.54225 * 103.56384 * 71.16205 * 16 14 13 18 18 C 1.55837 * 110.62671 * 154.99789 * 11 10 8 19 19 H 1.09007 * 115.56661 * 319.68354 * 18 11 10 20 20 N 1.50238 * 100.16329 * 33.70192 * 14 13 11 21 21 C 1.36940 * 130.83376 * 125.52843 * 20 14 13 22 22 H 1.07999 * 119.99823 * 179.97438 * 21 20 14 23 23 C 1.38809 * 119.99973 * 359.66756 * 21 20 14 24 24 N 1.31614 * 120.00303 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99736 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46902 * 359.97438 * 25 23 21 27 27 H 1.48505 * 109.46912 * 119.99708 * 25 23 21 28 28 H 1.48500 * 109.46975 * 239.99805 * 25 23 21 29 29 H 1.09001 * 109.47297 * 299.99995 * 1 2 3 30 30 H 1.09001 * 109.47241 * 60.00820 * 1 2 3 31 31 H 1.09009 * 109.46633 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47297 * 240.00005 * 2 1 3 33 33 H 1.09001 * 109.47241 * 119.99180 * 2 1 3 34 34 H 1.08000 * 126.81435 * 180.28685 * 6 5 4 35 35 H 0.97005 * 120.00056 * 354.62680 * 10 8 7 36 36 H 1.09004 * 110.62830 * 359.97438 * 13 11 10 37 37 H 1.09003 * 110.63004 * 123.01912 * 13 11 10 38 38 H 1.09001 * 110.62578 * 189.56328 * 16 14 13 39 39 H 1.09003 * 110.62420 * 312.42279 * 16 14 13 40 40 H 1.09001 * 110.64205 * 241.43270 * 17 16 14 41 41 H 1.09000 * 110.49246 * 118.49522 * 17 16 14 42 42 H 0.96998 * 120.00202 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 7 2.2294 2.1097 -1.0400 5 7 2.6563 3.2730 -0.6991 6 6 2.7349 3.3449 0.6298 7 6 2.3313 2.1258 1.1071 8 6 2.2456 1.7054 2.5155 9 8 1.9576 0.5563 2.7908 10 7 2.4863 2.5940 3.4998 11 6 2.2869 2.2090 4.8993 12 1 2.5031 1.1499 5.0394 13 6 0.8448 2.5399 5.3558 14 6 1.0643 3.5673 6.5331 15 1 0.2103 4.2014 6.7713 16 6 1.6550 2.7395 7.7141 17 6 3.0860 2.4086 7.2437 18 6 3.1736 3.0794 5.8398 19 1 4.1814 3.2850 5.4789 20 7 2.2914 4.2791 6.0384 21 6 2.5331 5.6118 5.8363 22 1 3.4955 5.9364 5.4692 23 6 1.5390 6.5448 6.0973 24 7 0.3640 6.1487 6.5384 25 14 1.8691 8.3628 5.8223 26 1 3.2573 8.5445 5.3272 27 1 0.9116 8.8935 4.8188 28 1 1.7009 9.0956 7.1029 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8901 31 1 -0.3633 -1.0278 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8901 34 1 3.0556 4.1947 1.2141 35 1 2.7917 3.4885 3.2817 36 1 0.2781 2.9909 4.5412 37 1 0.3438 1.6448 5.7245 38 1 1.6814 3.3362 8.6259 39 1 1.0785 1.8276 7.8700 40 1 3.2244 1.3304 7.1634 41 1 3.8206 2.8415 7.9228 42 1 -0.3307 6.8007 6.7204 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097035286.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:32:52 Heat of formation + Delta-G solvation = 106.774457 kcal Electronic energy + Delta-G solvation = -25810.284616 eV Core-core repulsion = 22214.973532 eV Total energy + Delta-G solvation = -3595.311084 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.29829 -39.83054 -38.39534 -35.60599 -34.00244 -32.63980 -31.44283 -30.89210 -29.19693 -28.86478 -27.81607 -24.93653 -24.31014 -23.71395 -22.35284 -21.03923 -20.16406 -19.83101 -18.81993 -17.85185 -17.07390 -16.84945 -16.40759 -15.87702 -15.01904 -14.87687 -14.66306 -14.34154 -14.08066 -13.91719 -13.57997 -13.12087 -13.05636 -12.45324 -12.16177 -12.06583 -11.92701 -11.78384 -11.42114 -11.19076 -11.01783 -10.98978 -10.96126 -10.63732 -10.43935 -10.27456 -10.13238 -10.05344 -9.96980 -9.50789 -9.41111 -9.24219 -9.05270 -8.65955 -7.03051 -5.81784 -3.21348 0.95325 2.05071 2.31469 3.16155 3.32050 3.33162 3.38826 3.41504 4.28620 4.34989 4.48840 4.66194 4.70962 4.97883 4.99341 5.01660 5.25549 5.29323 5.33854 5.53956 5.58926 5.69283 5.79222 5.81978 5.95261 5.95490 5.97923 6.04367 6.17806 6.30906 6.34961 6.37833 6.50702 6.61945 6.71742 6.84699 6.95036 7.20362 7.40136 7.67859 7.72198 8.09019 8.22633 8.34779 8.99985 9.63610 10.43069 11.27276 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.014894 B = 0.004694 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.535143 B = 5963.441475 C = 7109.505755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.104 3.896 3 N -0.255 5.255 4 N -0.067 5.067 5 N -0.276 5.276 6 C 0.002 3.998 7 C -0.064 4.064 8 C 0.591 3.409 9 O -0.549 6.549 10 N -0.684 5.684 11 C 0.129 3.871 12 H 0.085 0.915 13 C -0.145 4.145 14 C 0.155 3.845 15 H 0.154 0.846 16 C -0.138 4.138 17 C -0.127 4.127 18 C 0.126 3.874 19 H 0.089 0.911 20 N -0.592 5.592 21 C -0.218 4.218 22 H 0.080 0.920 23 C -0.008 4.008 24 N -0.919 5.919 25 Si 0.914 3.086 26 H -0.280 1.280 27 H -0.290 1.290 28 H -0.291 1.291 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.125 0.875 34 H 0.199 0.801 35 H 0.407 0.593 36 H 0.061 0.939 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.049 0.951 40 H 0.052 0.948 41 H 0.058 0.942 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.320 -11.378 -6.765 13.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.017 4.017 3 N -0.052 5.052 4 N -0.047 5.047 5 N -0.138 5.138 6 C -0.159 4.159 7 C -0.198 4.198 8 C 0.374 3.626 9 O -0.427 6.427 10 N -0.333 5.333 11 C 0.023 3.977 12 H 0.103 0.897 13 C -0.185 4.185 14 C 0.048 3.952 15 H 0.171 0.829 16 C -0.177 4.177 17 C -0.167 4.167 18 C 0.017 3.983 19 H 0.107 0.893 20 N -0.312 5.312 21 C -0.345 4.345 22 H 0.098 0.902 23 C -0.204 4.204 24 N -0.566 5.566 25 Si 0.745 3.255 26 H -0.205 1.205 27 H -0.217 1.217 28 H -0.218 1.218 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.122 0.878 33 H 0.143 0.857 34 H 0.216 0.784 35 H 0.243 0.757 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.974 -11.811 -8.096 14.455 hybrid contribution 0.275 1.248 0.894 1.560 sum 2.249 -10.563 -7.202 12.981 Atomic orbital electron populations 1.22094 0.92756 1.03947 1.03478 1.22412 0.96764 0.75847 1.06631 1.47843 1.40396 1.13515 1.03472 1.78207 1.15876 0.98756 1.11888 1.74885 1.15863 1.10404 1.12674 1.23979 1.02717 0.97269 0.91905 1.22120 1.12269 0.94139 0.91264 1.16699 0.77895 0.85500 0.82481 1.90737 1.50031 1.18266 1.83709 1.45746 1.65678 1.15522 1.06309 1.22744 0.98005 0.98708 0.78229 0.89706 1.23803 0.94426 0.99383 1.00930 1.24165 0.93115 0.89480 0.88448 0.82897 1.22917 0.95467 0.98907 1.00441 1.22761 0.98123 0.98250 0.97539 1.23163 0.93877 0.88133 0.93153 0.89339 1.46584 1.09617 1.00226 1.74796 1.19051 0.98135 0.79948 1.37392 0.90236 1.24698 0.95878 0.98032 1.01752 1.69451 1.03923 1.32221 1.51023 0.86010 0.77393 0.84722 0.77405 1.20494 1.21749 1.21798 0.91304 0.91632 0.89589 0.87787 0.85723 0.78374 0.75726 0.92049 0.92768 0.92506 0.93251 0.92918 0.92281 0.93509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 10.24 37.16 0.38 -1.16 16 2 C 0.10 1.07 6.74 -4.04 -0.03 1.04 16 3 N -0.25 -3.48 3.39 -57.37 -0.19 -3.68 16 4 N -0.07 -1.01 13.14 60.35 0.79 -0.22 16 5 N -0.28 -4.34 12.35 30.47 0.38 -3.96 16 6 C 0.00 0.02 11.55 -17.35 -0.20 -0.18 16 7 C -0.06 -0.92 6.98 -82.33 -0.57 -1.50 16 8 C 0.59 9.18 7.80 -12.61 -0.10 9.08 16 9 O -0.55 -9.32 14.40 5.26 0.08 -9.25 16 10 N -0.68 -10.71 5.06 -52.53 -0.27 -10.98 16 11 C 0.13 2.18 2.86 -65.44 -0.19 1.99 16 12 H 0.08 1.42 7.19 -51.93 -0.37 1.04 16 13 C -0.14 -2.73 6.33 -23.14 -0.15 -2.87 16 14 C 0.15 3.30 4.77 -61.70 -0.29 3.01 16 15 H 0.15 3.81 5.52 -51.93 -0.29 3.52 16 16 C -0.14 -2.55 6.43 -24.57 -0.16 -2.70 16 17 C -0.13 -2.13 6.43 -24.57 -0.16 -2.29 16 18 C 0.13 2.25 5.01 -62.81 -0.31 1.93 16 19 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 20 N -0.59 -13.10 2.97 -144.64 -0.43 -13.53 16 21 C -0.22 -5.39 10.59 -15.06 -0.16 -5.55 16 22 H 0.08 1.90 7.83 -52.49 -0.41 1.49 16 23 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 24 N -0.92 -24.83 10.46 55.49 0.58 -24.25 16 25 Si 0.91 20.78 29.55 -169.99 -5.02 15.76 16 26 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 28 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.09 0.59 8.14 -51.92 -0.42 0.17 16 32 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.12 1.36 6.23 -51.93 -0.32 1.03 16 34 H 0.20 2.28 7.56 -52.49 -0.40 1.89 16 35 H 0.41 6.15 7.69 -40.82 -0.31 5.84 16 36 H 0.06 1.26 7.98 -51.93 -0.41 0.84 16 37 H 0.05 0.94 7.90 -51.93 -0.41 0.53 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.05 0.81 7.91 -51.93 -0.41 0.40 16 40 H 0.05 0.77 7.85 -51.93 -0.41 0.36 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 342.83 15.07 5.17 5.17 Total: -1.00 -29.31 342.83 -6.80 -36.10 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -5.84 Total: 8.32 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -2.03 Total: 0.51 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: 0.86 Total: -56.62 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.08 Total: -9.25 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.31 -6.80 -36.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097035286.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.878 kcal (2) G-P(sol) polarization free energy of solvation -29.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds