Wall clock time and date at job start Tue Mar 31 2020 09:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.46654 * 2 1 4 4 N 1.28717 * 126.03500 * 272.40364 * 3 2 1 5 5 N 1.28515 * 110.64055 * 180.02562 * 4 3 2 6 6 C 1.33319 * 109.43795 * 359.72712 * 5 4 3 7 7 C 1.37005 * 106.37072 * 0.42815 * 6 5 4 8 8 C 1.47235 * 127.18815 * 179.84995 * 7 6 5 9 9 O 1.21622 * 120.00127 * 185.13930 * 8 7 6 10 10 N 1.34771 * 120.00252 * 5.13897 * 8 7 6 11 11 C 1.46507 * 120.00440 * 174.62622 * 10 8 7 12 12 H 1.09000 * 110.55492 * 32.09971 * 11 10 8 13 13 C 1.54841 * 110.62673 * 269.02793 * 11 10 8 14 14 C 1.57785 * 103.27332 * 240.99027 * 13 11 10 15 15 H 1.09004 * 115.64739 * 158.99027 * 14 13 11 16 16 C 1.55850 * 105.79875 * 289.04207 * 14 13 11 17 17 C 1.54225 * 103.56384 * 71.16205 * 16 14 13 18 18 C 1.55837 * 110.62671 * 154.99789 * 11 10 8 19 19 H 1.09007 * 115.56661 * 319.68354 * 18 11 10 20 20 N 1.50238 * 100.16329 * 33.70192 * 14 13 11 21 21 C 1.36940 * 130.83376 * 125.52843 * 20 14 13 22 22 H 1.07999 * 119.99823 * 179.97438 * 21 20 14 23 23 C 1.38809 * 119.99973 * 359.66756 * 21 20 14 24 24 N 1.31614 * 120.00303 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99736 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46902 * 359.97438 * 25 23 21 27 27 H 1.48505 * 109.46912 * 119.99708 * 25 23 21 28 28 H 1.48500 * 109.46975 * 239.99805 * 25 23 21 29 29 H 1.09001 * 109.47297 * 299.99995 * 1 2 3 30 30 H 1.09001 * 109.47241 * 60.00820 * 1 2 3 31 31 H 1.09009 * 109.46633 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47297 * 240.00005 * 2 1 3 33 33 H 1.09001 * 109.47241 * 119.99180 * 2 1 3 34 34 H 1.08000 * 126.81435 * 180.28685 * 6 5 4 35 35 H 0.97005 * 120.00056 * 354.62680 * 10 8 7 36 36 H 1.09004 * 110.62830 * 359.97438 * 13 11 10 37 37 H 1.09003 * 110.63004 * 123.01912 * 13 11 10 38 38 H 1.09001 * 110.62578 * 189.56328 * 16 14 13 39 39 H 1.09003 * 110.62420 * 312.42279 * 16 14 13 40 40 H 1.09001 * 110.64205 * 241.43270 * 17 16 14 41 41 H 1.09000 * 110.49246 * 118.49522 * 17 16 14 42 42 H 0.96998 * 120.00202 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 7 2.2294 2.1097 -1.0400 5 7 2.6563 3.2730 -0.6991 6 6 2.7349 3.3449 0.6298 7 6 2.3313 2.1258 1.1071 8 6 2.2456 1.7054 2.5155 9 8 1.9576 0.5563 2.7908 10 7 2.4863 2.5940 3.4998 11 6 2.2869 2.2090 4.8993 12 1 2.5031 1.1499 5.0394 13 6 0.8448 2.5399 5.3558 14 6 1.0643 3.5673 6.5331 15 1 0.2103 4.2014 6.7713 16 6 1.6550 2.7395 7.7141 17 6 3.0860 2.4086 7.2437 18 6 3.1736 3.0794 5.8398 19 1 4.1814 3.2850 5.4789 20 7 2.2914 4.2791 6.0384 21 6 2.5331 5.6118 5.8363 22 1 3.4955 5.9364 5.4692 23 6 1.5390 6.5448 6.0973 24 7 0.3640 6.1487 6.5384 25 14 1.8691 8.3628 5.8223 26 1 3.2573 8.5445 5.3272 27 1 0.9116 8.8935 4.8188 28 1 1.7009 9.0956 7.1029 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8901 31 1 -0.3633 -1.0278 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8901 34 1 3.0556 4.1947 1.2141 35 1 2.7917 3.4885 3.2817 36 1 0.2781 2.9909 4.5412 37 1 0.3438 1.6448 5.7245 38 1 1.6814 3.3362 8.6259 39 1 1.0785 1.8276 7.8700 40 1 3.2244 1.3304 7.1634 41 1 3.8206 2.8415 7.9228 42 1 -0.3307 6.8007 6.7204 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097035286.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:32:51 Heat of formation + Delta-G solvation = 88.052039 kcal Electronic energy + Delta-G solvation = -25811.096481 eV Core-core repulsion = 22214.973532 eV Total energy + Delta-G solvation = -3596.122949 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.40727 -41.22286 -39.78512 -36.60099 -35.33991 -34.42838 -32.62556 -31.82470 -30.92601 -30.31784 -29.27247 -26.22369 -25.80813 -24.84225 -23.51476 -22.30593 -21.51807 -21.32268 -20.28013 -19.03111 -18.79421 -17.97131 -17.53469 -17.18929 -16.72128 -16.04304 -15.90408 -15.78764 -15.41600 -15.13601 -14.87148 -14.55717 -13.97892 -13.72432 -13.64124 -13.24143 -13.20793 -12.90384 -12.86442 -12.76993 -12.69777 -12.66900 -12.07041 -12.01850 -11.90543 -11.82850 -11.69127 -11.38369 -11.27963 -10.99689 -10.91456 -10.73596 -10.65497 -10.01787 -8.83563 -7.73143 -5.12142 -0.17735 1.03163 1.17318 1.51014 1.53426 1.60879 1.96218 2.13046 2.53127 3.25562 3.40218 3.42840 3.48808 3.66490 3.87765 3.92804 4.01733 4.11875 4.23851 4.29342 4.32316 4.48466 4.52314 4.60816 4.64813 4.70397 4.79579 4.85492 4.93401 4.94609 5.06328 5.12325 5.20027 5.21558 5.35759 5.42577 5.51588 5.59977 5.71151 5.93805 6.31473 6.42731 6.98358 7.10031 7.21213 7.76777 8.61449 9.34276 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.014894 B = 0.004694 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.535143 B = 5963.441475 C = 7109.505755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.095 3.905 3 N -0.248 5.248 4 N -0.075 5.075 5 N -0.301 5.301 6 C 0.006 3.994 7 C -0.076 4.076 8 C 0.598 3.402 9 O -0.561 6.561 10 N -0.683 5.683 11 C 0.142 3.858 12 H 0.099 0.901 13 C -0.135 4.135 14 C 0.139 3.861 15 H 0.114 0.886 16 C -0.131 4.131 17 C -0.119 4.119 18 C 0.127 3.873 19 H 0.104 0.896 20 N -0.611 5.611 21 C -0.209 4.209 22 H 0.088 0.912 23 C -0.065 4.065 24 N -0.948 5.948 25 Si 0.967 3.033 26 H -0.264 1.264 27 H -0.301 1.301 28 H -0.302 1.302 29 H 0.043 0.957 30 H 0.064 0.936 31 H 0.114 0.886 32 H 0.133 0.867 33 H 0.121 0.879 34 H 0.219 0.781 35 H 0.410 0.590 36 H 0.036 0.964 37 H 0.070 0.930 38 H 0.036 0.964 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.059 0.941 42 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.727 -13.160 -7.420 15.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.023 4.023 3 N -0.046 5.046 4 N -0.055 5.055 5 N -0.162 5.162 6 C -0.155 4.155 7 C -0.210 4.210 8 C 0.382 3.618 9 O -0.441 6.441 10 N -0.332 5.332 11 C 0.037 3.963 12 H 0.117 0.883 13 C -0.175 4.175 14 C 0.032 3.968 15 H 0.132 0.868 16 C -0.170 4.170 17 C -0.158 4.158 18 C 0.020 3.980 19 H 0.122 0.878 20 N -0.333 5.333 21 C -0.338 4.338 22 H 0.106 0.894 23 C -0.257 4.257 24 N -0.598 5.598 25 Si 0.798 3.202 26 H -0.189 1.189 27 H -0.229 1.229 28 H -0.230 1.230 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.133 0.867 32 H 0.151 0.849 33 H 0.139 0.861 34 H 0.236 0.764 35 H 0.246 0.754 36 H 0.055 0.945 37 H 0.088 0.912 38 H 0.055 0.945 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.077 0.923 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 3.413 -13.626 -8.773 16.562 hybrid contribution -0.175 1.706 1.082 2.028 sum 3.239 -11.920 -7.692 14.551 Atomic orbital electron populations 1.22077 0.92019 1.05442 1.02123 1.22748 0.97314 0.74409 1.07878 1.48172 1.39269 1.14282 1.02867 1.78154 1.16122 0.98903 1.12307 1.74869 1.16922 1.10962 1.13493 1.24357 1.01799 0.97758 0.91561 1.22035 1.13332 0.94620 0.91054 1.16699 0.77238 0.85142 0.82719 1.90729 1.50587 1.18795 1.83993 1.45663 1.65823 1.15749 1.05963 1.22547 0.96129 0.99086 0.78585 0.88312 1.23652 0.95726 0.98958 0.99176 1.24000 0.92162 0.89987 0.90652 0.86832 1.22817 0.96954 0.99000 0.98269 1.22721 0.96607 1.00138 0.96341 1.23382 0.94077 0.86446 0.94102 0.87782 1.46766 1.11022 1.00476 1.75009 1.19392 0.97933 0.81404 1.35086 0.89437 1.25341 0.96148 1.01073 1.03167 1.69704 1.04564 1.32386 1.53131 0.85151 0.77566 0.81194 0.76284 1.18879 1.22858 1.22994 0.93762 0.91734 0.86709 0.84938 0.86055 0.76405 0.75397 0.94492 0.91183 0.94508 0.90897 0.89665 0.92253 0.94650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 10.24 71.98 0.74 -1.96 16 2 C 0.10 1.76 6.74 86.38 0.58 2.35 16 3 N -0.25 -6.39 3.39 -335.42 -1.14 -7.53 16 4 N -0.07 -2.16 13.14 37.02 0.49 -1.67 16 5 N -0.30 -9.15 12.35 -57.50 -0.71 -9.86 16 6 C 0.01 0.17 11.55 84.18 0.97 1.14 16 7 C -0.08 -2.10 6.98 40.41 0.28 -1.82 16 8 C 0.60 17.53 7.80 86.61 0.68 18.20 16 9 O -0.56 -17.92 14.40 -4.10 -0.06 -17.98 16 10 N -0.68 -20.12 5.06 -438.37 -2.22 -22.34 16 11 C 0.14 4.47 2.86 46.60 0.13 4.61 16 12 H 0.10 2.92 7.19 -2.39 -0.02 2.90 16 13 C -0.13 -4.93 6.33 32.92 0.21 -4.72 16 14 C 0.14 5.91 4.77 46.94 0.22 6.14 16 15 H 0.11 5.88 5.52 -2.39 -0.01 5.86 16 16 C -0.13 -4.65 6.43 32.00 0.21 -4.45 16 17 C -0.12 -3.61 6.43 31.99 0.21 -3.40 16 18 C 0.13 4.23 5.01 46.22 0.23 4.46 16 19 H 0.10 3.15 8.14 -2.38 -0.02 3.13 16 20 N -0.61 -26.63 2.97 -611.53 -1.81 -28.44 16 21 C -0.21 -10.28 10.59 84.03 0.89 -9.39 16 22 H 0.09 4.06 7.83 -2.91 -0.02 4.04 16 23 C -0.06 -3.38 5.50 84.86 0.47 -2.92 16 24 N -0.95 -53.00 10.46 21.65 0.23 -52.78 16 25 Si 0.97 43.32 29.55 68.60 2.03 45.35 16 26 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 27 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 28 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 29 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.11 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.12 2.39 6.23 -2.39 -0.01 2.38 16 34 H 0.22 4.68 7.56 -2.91 -0.02 4.66 16 35 H 0.41 11.70 7.69 -92.70 -0.71 10.98 16 36 H 0.04 1.51 7.98 -2.38 -0.02 1.49 16 37 H 0.07 2.31 7.90 -2.39 -0.02 2.29 16 38 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.07 2.21 7.91 -2.39 -0.02 2.19 16 40 H 0.08 2.09 7.85 -2.39 -0.02 2.07 16 41 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.24 13.54 8.31 -92.71 -0.77 12.76 16 Total: -1.00 -63.65 342.83 2.95 -60.70 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: 0.34 Total: 26.30 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: 5.81 Total: 8.24 kcal Atomic # 7 Polarization: -117.45 SS G_CDS: -5.17 Total: -122.62 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.06 Total: -17.98 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -63.65 2.95 -60.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097035286.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.752 kcal (2) G-P(sol) polarization free energy of solvation -63.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds