Wall clock time and date at job start Tue Mar 31 2020 09:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.46652 * 2 1 4 4 C 1.34814 * 126.59522 * 124.99596 * 3 2 1 5 5 C 1.36595 * 106.84125 * 179.97438 * 4 3 2 6 6 C 1.47528 * 125.77369 * 179.97438 * 5 4 3 7 7 O 1.21589 * 119.99781 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00265 * 180.02562 * 6 5 4 9 9 C 1.46496 * 120.00106 * 180.02562 * 8 6 5 10 10 H 1.08997 * 110.68559 * 36.53095 * 9 8 6 11 11 C 1.54857 * 110.62430 * 273.54522 * 9 8 6 12 12 C 1.55841 * 103.44584 * 241.51241 * 11 9 8 13 13 H 1.08995 * 115.56485 * 158.81503 * 12 11 9 14 14 C 1.55848 * 105.06329 * 288.17727 * 12 11 9 15 15 C 1.54857 * 103.44735 * 71.82383 * 14 12 11 16 16 C 1.55845 * 110.62436 * 159.52059 * 9 8 6 17 17 H 1.08990 * 115.56380 * 319.67284 * 16 9 8 18 18 N 1.50235 * 101.05038 * 85.55287 * 16 9 8 19 19 C 1.36939 * 130.83995 * 233.93311 * 18 16 9 20 20 H 1.08002 * 119.99732 * 0.02562 * 19 18 16 21 21 C 1.38804 * 120.00527 * 180.02562 * 19 18 16 22 22 N 1.31625 * 120.00010 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00260 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.46855 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46835 * 120.00344 * 23 21 19 26 26 H 1.48505 * 109.46938 * 240.00096 * 23 21 19 27 27 N 1.34402 * 108.45887 * 0.24479 * 5 4 3 28 28 N 1.28761 * 109.51958 * 359.58531 * 27 5 4 29 29 H 1.08997 * 109.47672 * 299.99633 * 1 2 3 30 30 H 1.08996 * 109.47422 * 60.00669 * 1 2 3 31 31 H 1.09009 * 109.46748 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47612 * 239.99813 * 2 1 3 33 33 H 1.09003 * 109.47224 * 119.99632 * 2 1 3 34 34 H 1.07996 * 126.58291 * 0.02562 * 4 3 2 35 35 H 0.97004 * 119.99423 * 0.02562 * 8 6 5 36 36 H 1.09004 * 110.62191 * 0.02562 * 11 9 8 37 37 H 1.08997 * 110.62718 * 122.85832 * 11 9 8 38 38 H 1.09002 * 110.62792 * 190.31724 * 14 12 11 39 39 H 1.09002 * 110.62424 * 313.33472 * 14 12 11 40 40 H 1.09000 * 110.62212 * 241.51112 * 15 14 12 41 41 H 1.08993 * 110.76246 * 118.55546 * 15 14 12 42 42 H 0.96996 * 119.99927 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.8713 1.9322 0.8867 5 6 3.0506 3.2323 0.5081 6 6 3.9072 4.2195 1.1924 7 8 4.5307 3.8985 2.1856 8 7 3.9985 5.4772 0.7165 9 6 4.8496 6.4573 1.3957 10 1 5.7527 5.9827 1.7794 11 6 4.0724 7.1554 2.5388 12 6 4.0703 8.6544 2.1128 13 1 3.2925 9.2705 2.5639 14 6 5.5369 9.1375 2.3240 15 6 6.3141 8.4394 1.1809 16 6 5.2112 7.6297 0.4347 17 1 5.4382 7.3432 -0.5921 18 7 4.0213 8.5286 0.6165 19 6 3.1581 9.0679 -0.2996 20 1 3.2870 8.8588 -1.3513 21 6 2.1174 9.8831 0.1234 22 7 1.9605 10.1383 1.4051 23 14 0.9403 10.6193 -1.1264 24 1 1.3308 10.1829 -2.4910 25 1 -0.4414 10.1587 -0.8362 26 1 0.9954 12.1011 -1.0453 27 7 2.3099 3.4619 -0.5896 28 7 1.6885 2.3844 -0.9225 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.3265 1.4398 1.7333 35 1 3.5007 5.7333 -0.0757 36 1 3.0539 6.7719 2.6006 37 1 4.5886 7.0245 3.4898 38 1 5.6020 10.2212 2.2267 39 1 5.9112 8.8150 3.2956 40 1 7.0738 7.7708 1.5857 41 1 6.7665 9.1750 0.5159 42 1 1.2334 10.7084 1.7006 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098120065.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:32:54 Heat of formation + Delta-G solvation = 105.750833 kcal Electronic energy + Delta-G solvation = -25261.325902 eV Core-core repulsion = 21665.970430 eV Total energy + Delta-G solvation = -3595.355472 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.18322 -39.59976 -38.14271 -35.58849 -33.71447 -32.45633 -31.43719 -30.49097 -29.05214 -28.72580 -27.62074 -24.83636 -24.23230 -23.51791 -21.84172 -21.18579 -19.78497 -19.71204 -18.66361 -17.84488 -16.94221 -16.27019 -16.20066 -15.80743 -14.87376 -14.79920 -14.66071 -14.30853 -14.05949 -13.76137 -13.39762 -13.18771 -12.78494 -12.69029 -12.27222 -11.99013 -11.84533 -11.77825 -11.21032 -11.17269 -11.04476 -10.86892 -10.84717 -10.45742 -10.45182 -10.31475 -10.01899 -9.91010 -9.80146 -9.27853 -9.21321 -9.11487 -8.90532 -8.37747 -6.88421 -5.68056 -3.06699 1.11710 1.85812 1.92943 3.42592 3.48443 3.50378 3.54854 3.62959 4.08247 4.26038 4.42360 4.47624 4.65563 4.78635 5.00158 5.09439 5.13911 5.18102 5.39654 5.42534 5.65046 5.71192 5.75451 5.85329 5.93232 6.10463 6.16455 6.20147 6.27330 6.36287 6.47926 6.54619 6.67428 6.79028 6.88676 7.00664 7.16178 7.38576 7.55018 7.85190 7.87602 8.14449 8.23442 8.62242 9.14100 9.77384 10.57523 11.41230 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.014401 B = 0.004218 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.784579 B = 6636.606345 C = 8034.410087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.119 3.881 3 N -0.366 5.366 4 C 0.086 3.914 5 C -0.094 4.094 6 C 0.598 3.402 7 O -0.553 6.553 8 N -0.687 5.687 9 C 0.128 3.872 10 H 0.080 0.920 11 C -0.142 4.142 12 C 0.153 3.847 13 H 0.153 0.847 14 C -0.138 4.138 15 C -0.126 4.126 16 C 0.125 3.875 17 H 0.089 0.911 18 N -0.590 5.590 19 C -0.211 4.211 20 H 0.079 0.921 21 C -0.010 4.010 22 N -0.921 5.921 23 Si 0.914 3.086 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 N -0.198 5.198 28 N -0.067 5.067 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.203 0.797 35 H 0.411 0.589 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.048 0.952 40 H 0.051 0.949 41 H 0.057 0.943 42 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.093 -18.899 0.126 19.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.002 4.002 3 N -0.152 5.152 4 C -0.070 4.070 5 C -0.233 4.233 6 C 0.381 3.619 7 O -0.432 6.432 8 N -0.335 5.335 9 C 0.022 3.978 10 H 0.098 0.902 11 C -0.183 4.183 12 C 0.047 3.953 13 H 0.170 0.830 14 C -0.177 4.177 15 C -0.166 4.166 16 C 0.016 3.984 17 H 0.107 0.893 18 N -0.311 5.311 19 C -0.339 4.339 20 H 0.097 0.903 21 C -0.206 4.206 22 N -0.569 5.569 23 Si 0.745 3.255 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.219 1.219 27 N -0.072 5.072 28 N -0.048 5.048 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.122 0.878 34 H 0.219 0.781 35 H 0.247 0.753 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.441 -18.607 -0.546 18.670 hybrid contribution -0.371 -0.008 -0.083 0.380 sum 1.071 -18.615 -0.629 18.657 Atomic orbital electron populations 1.22091 0.92818 1.03523 1.04202 1.21987 0.96839 0.76437 1.04896 1.50609 1.31986 1.12275 1.20284 1.23343 0.93433 0.94240 0.96015 1.21674 1.07415 0.95086 0.99155 1.16771 0.80342 0.81618 0.83158 1.90755 1.46873 1.79706 1.25843 1.45845 1.47023 1.09255 1.31345 1.22706 0.92384 0.88233 0.94451 0.90241 1.23470 0.99304 0.99672 0.95840 1.23765 0.94775 0.92479 0.84310 0.82998 1.23050 0.99016 0.99686 0.95978 1.22861 0.96856 0.98780 0.98148 1.23172 0.89488 0.89912 0.95792 0.89308 1.46546 1.28418 1.53464 1.02639 1.19064 1.04260 1.22447 0.88086 0.90280 1.24680 0.99112 1.00630 0.96163 1.69470 1.33097 1.41723 1.12570 0.85996 0.80787 0.78560 0.80145 1.20527 1.21875 1.21911 1.74717 1.04426 1.17731 1.10336 1.81971 1.20678 0.90265 1.11862 0.91646 0.90654 0.90018 0.88493 0.87831 0.78052 0.75341 0.92237 0.92743 0.92628 0.93309 0.92987 0.92418 0.93687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.95 10.12 37.16 0.38 -0.57 16 2 C 0.12 0.67 7.26 -4.04 -0.03 0.64 16 3 N -0.37 -3.93 3.69 -61.06 -0.23 -4.16 16 4 C 0.09 1.01 11.27 -16.84 -0.19 0.82 16 5 C -0.09 -1.48 6.99 -83.55 -0.58 -2.07 16 6 C 0.60 10.82 7.81 -12.47 -0.10 10.72 16 7 O -0.55 -10.85 16.59 5.29 0.09 -10.76 16 8 N -0.69 -12.97 5.09 -52.44 -0.27 -13.24 16 9 C 0.13 2.48 2.73 -65.43 -0.18 2.30 16 10 H 0.08 1.49 7.36 -51.93 -0.38 1.11 16 11 C -0.14 -3.00 6.22 -24.24 -0.15 -3.15 16 12 C 0.15 3.56 4.72 -62.80 -0.30 3.26 16 13 H 0.15 4.04 5.52 -51.93 -0.29 3.76 16 14 C -0.14 -2.75 6.44 -24.23 -0.16 -2.91 16 15 C -0.13 -2.32 6.44 -24.23 -0.16 -2.48 16 16 C 0.13 2.51 5.04 -62.80 -0.32 2.19 16 17 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 18 N -0.59 -14.34 2.99 -145.82 -0.44 -14.78 16 19 C -0.21 -5.67 10.59 -15.06 -0.16 -5.83 16 20 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 21 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 22 N -0.92 -26.34 10.47 55.49 0.58 -25.76 16 23 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 N -0.20 -3.35 12.04 32.85 0.40 -2.95 16 28 N -0.07 -0.99 13.65 60.35 0.82 -0.17 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.26 8.14 -51.92 -0.42 -0.17 16 32 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.10 0.29 8.08 -51.93 -0.42 -0.13 16 34 H 0.20 1.67 8.06 -52.49 -0.42 1.25 16 35 H 0.41 8.02 8.31 -40.82 -0.34 7.68 16 36 H 0.06 1.37 7.98 -51.93 -0.41 0.96 16 37 H 0.05 1.05 7.82 -51.93 -0.41 0.65 16 38 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.05 0.87 7.82 -51.93 -0.41 0.46 16 40 H 0.05 0.83 7.82 -51.93 -0.41 0.43 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 348.41 15.07 5.25 5.25 Total: -1.00 -32.64 348.41 -6.84 -39.48 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -5.99 Total: 7.42 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -2.03 Total: 2.56 kcal Atomic # 7 Polarization: -61.93 SS G_CDS: 0.87 Total: -61.06 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.09 Total: -10.76 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.64 -6.84 -39.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098120065.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.232 kcal (2) G-P(sol) polarization free energy of solvation -32.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds